cluster # 4010

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Schistosoma mansoni
cluster # 4010 cluster # 4010 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_4010#0 length = 345 sequences # 1

consensus_4010#1 length = 270 sequences # 1

consensusID : consensus_4010#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 345
fasta sequence

                              [TTTTTTTTTTTTTTTTACTATACAAAAATTTTATTATGGGTGAATGTAAACATTAATTCCAGGGGAGATAAGAAGAAATTAACATGTAAACAACAAGAAGGGCTATCCATGTAAGTTTAACCAATAACTGTAAAGTACACCAAAATGAACGCAAATACAAAGATTACCGTAGGCAATAAATAAAACAATTAACATATAATTATAAACTAAATTCATAAATCTTGAAACCCTATCCATTTAATTTTAATGTGACTTTTATTATGATCATGAAAAGATCTGATGTACAAATTACGTAATATAATACAGATATATTGGTAAAACAATTATTGCAAATATCGTCTATAA]

[+] EMBL AI395160             [TTTTTTTTTTTTTTTTACTATACAAAAATTTTATTATGGGTGAATGTAAACATTAATTCCAGGGGAGATAAGAAGAAATTAACATGTAAACAACAAGAAGGGCTATCCATGTAAGTTTAACCAATAACTGTAAAGTACACCAAAATGAACGCAAATACAAAGATTACCGTAGGCAATAAATAAAACAATTAACATATAATTATAAACTAAATTCATAAATCTTGAAACCCTATCCATTTAATTTTAATGTGACTTTTATTATGATCATGAAAAGATCTGATGTACAAATTACGTAATATAATACAGATATATTGGTAAAACAATTATTGCAAATATCGTCTATAA]




>consensus_4010#0
TTTTTTTTTTTTTTTTACTATACAAAAATTTTATTATGGGTGAATGTAAACATTAATTCC
AGGGGAGATAAGAAGAAATTAACATGTAAACAACAAGAAGGGCTATCCATGTAAGTTTAA
CCAATAACTGTAAAGTACACCAAAATGAACGCAAATACAAAGATTACCGTAGGCAATAAA
TAAAACAATTAACATATAATTATAAACTAAATTCATAAATCTTGAAACCCTATCCATTTA
ATTTTAATGTGACTTTTATTATGATCATGAAAAGATCTGATGTACAAATTACGTAATATA
ATACAGATATATTGGTAAAACAATTATTGCAAATATCGTCTATAA

consensusID : consensus_4010#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 270
fasta sequence

                              [AAAAATTTTCAATTCATGGGTGCAATGCTAAACATTCAATTCCCAGGGGAGAATCAAGCAGAAATTAACATGTAAACAACAAGAAGGGCTATCCATGTAAGTTTAACCACCAACTGTAAAGTACACCAAAATGAACGCAAATACAAAGATTACCGTAGCAATAAATAAAACAATTAACATATAACACACAACTAAATTCATCCCTCTTGAAACCCTATCCATTTAATTTTTAATGTGACTTTTATTTATGATCATGAAAAGAATCTGATG]

[+] EMBL AI026176             [AAAAATTTTCAATTCATGGGTGCAATGCTAAACATTCAATTCCCAGGGGAGAATCAAGCAGAAATTAACATGTAAACAACAAGAAGGGCTATCCATGTAAGTTTAACCACCAACTGTAAAGTACACCAAAATGAACGCAAATACAAAGATTACCGTAGCAATAAATAAAACAATTAACATATAACACACAACTAAATTCATCCCTCTTGAAACCCTATCCATTTAATTTTTAATGTGACTTTTATTTATGATCATGAAAAGAATCTGATG]




>consensus_4010#1
AAAAATTTTCAATTCATGGGTGCAATGCTAAACATTCAATTCCCAGGGGAGAATCAAGCA
GAAATTAACATGTAAACAACAAGAAGGGCTATCCATGTAAGTTTAACCACCAACTGTAAA
GTACACCAAAATGAACGCAAATACAAAGATTACCGTAGCAATAAATAAAACAATTAACAT
ATAACACACAACTAAATTCATCCCTCTTGAAACCCTATCCATTTAATTTTTAATGTGACT
TTTATTTATGATCATGAAAAGAATCTGATG

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_4010#0      TTTTTTTTTTTTTTTTACTATACAAAAATTTTA---TTATGGGTG-AATG-TAAACATTA 55
consensus_4010#1      -----------------------AAAAATTTTCAATTCATGGGTGCAATGCTAAACATTC 37
                                             *********    * ******* **** ******** 

consensus_4010#0      A--TTCCAGGGGAGA--TAAGAAGAAATTAACATGTAAACAACAAGAAGGGCTATCCATG 111
consensus_4010#1      AATTCCCAGGGGAGAATCAAGCAGAAATTAACATGTAAACAACAAGAAGGGCTATCCATG 97
                      *  * **********   *** **************************************

consensus_4010#0      TAAGTTTAACCAATAACTGTAAAGTACACCAAAATGAACGCAAATACAAAGATTACCGTA 171
consensus_4010#1      TAAGTTTAACCACCAACTGTAAAGTACACCAAAATGAACGCAAATACAAAGATTACCGTA 157
                      ************  **********************************************

consensus_4010#0      GGCAATAAATAAAACAATTAACATATAATTATAAACTAAATTCATAAATCTTGAAACCCT 231
consensus_4010#1      G-CAATAAATAAAACAATTAACATATAACACACAACTAAATTCATCCCTCTTGAAACCCT 216
                      * **************************     ************   ************

consensus_4010#0      ATCCATTTAATTTT-AATGTGACTTTTATT-ATGATCATGAAAAGA-TCTGATGTACAAA 288
consensus_4010#1      ATCCATTTAATTTTTAATGTGACTTTTATTTATGATCATGAAAAGAATCTGATG------ 270
                      ************** *************** *************** *******      

consensus_4010#0      TTACGTAATATAATACAGATATATTGGTAAAACAATTATTGCAAATATCGTCTATAA 345
consensus_4010#1      ---------------------------------------------------------