These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_4010#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 345 fasta sequence [TTTTTTTTTTTTTTTTACTATACAAAAATTTTATTATGGGTGAATGTAAACATTAATTCCAGGGGAGATAAGAAGAAATTAACATGTAAACAACAAGAAGGGCTATCCATGTAAGTTTAACCAATAACTGTAAAGTACACCAAAATGAACGCAAATACAAAGATTACCGTAGGCAATAAATAAAACAATTAACATATAATTATAAACTAAATTCATAAATCTTGAAACCCTATCCATTTAATTTTAATGTGACTTTTATTATGATCATGAAAAGATCTGATGTACAAATTACGTAATATAATACAGATATATTGGTAAAACAATTATTGCAAATATCGTCTATAA] [+] EMBL AI395160 [TTTTTTTTTTTTTTTTACTATACAAAAATTTTATTATGGGTGAATGTAAACATTAATTCCAGGGGAGATAAGAAGAAATTAACATGTAAACAACAAGAAGGGCTATCCATGTAAGTTTAACCAATAACTGTAAAGTACACCAAAATGAACGCAAATACAAAGATTACCGTAGGCAATAAATAAAACAATTAACATATAATTATAAACTAAATTCATAAATCTTGAAACCCTATCCATTTAATTTTAATGTGACTTTTATTATGATCATGAAAAGATCTGATGTACAAATTACGTAATATAATACAGATATATTGGTAAAACAATTATTGCAAATATCGTCTATAA] consensusID : consensus_4010#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 270 fasta sequence [AAAAATTTTCAATTCATGGGTGCAATGCTAAACATTCAATTCCCAGGGGAGAATCAAGCAGAAATTAACATGTAAACAACAAGAAGGGCTATCCATGTAAGTTTAACCACCAACTGTAAAGTACACCAAAATGAACGCAAATACAAAGATTACCGTAGCAATAAATAAAACAATTAACATATAACACACAACTAAATTCATCCCTCTTGAAACCCTATCCATTTAATTTTTAATGTGACTTTTATTTATGATCATGAAAAGAATCTGATG] [+] EMBL AI026176 [AAAAATTTTCAATTCATGGGTGCAATGCTAAACATTCAATTCCCAGGGGAGAATCAAGCAGAAATTAACATGTAAACAACAAGAAGGGCTATCCATGTAAGTTTAACCACCAACTGTAAAGTACACCAAAATGAACGCAAATACAAAGATTACCGTAGCAATAAATAAAACAATTAACATATAACACACAACTAAATTCATCCCTCTTGAAACCCTATCCATTTAATTTTTAATGTGACTTTTATTTATGATCATGAAAAGAATCTGATG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_4010#0 TTTTTTTTTTTTTTTTACTATACAAAAATTTTA---TTATGGGTG-AATG-TAAACATTA 55 consensus_4010#1 -----------------------AAAAATTTTCAATTCATGGGTGCAATGCTAAACATTC 37 ********* * ******* **** ******** consensus_4010#0 A--TTCCAGGGGAGA--TAAGAAGAAATTAACATGTAAACAACAAGAAGGGCTATCCATG 111 consensus_4010#1 AATTCCCAGGGGAGAATCAAGCAGAAATTAACATGTAAACAACAAGAAGGGCTATCCATG 97 * * ********** *** ************************************** consensus_4010#0 TAAGTTTAACCAATAACTGTAAAGTACACCAAAATGAACGCAAATACAAAGATTACCGTA 171 consensus_4010#1 TAAGTTTAACCACCAACTGTAAAGTACACCAAAATGAACGCAAATACAAAGATTACCGTA 157 ************ ********************************************** consensus_4010#0 GGCAATAAATAAAACAATTAACATATAATTATAAACTAAATTCATAAATCTTGAAACCCT 231 consensus_4010#1 G-CAATAAATAAAACAATTAACATATAACACACAACTAAATTCATCCCTCTTGAAACCCT 216 * ************************** ************ ************ consensus_4010#0 ATCCATTTAATTTT-AATGTGACTTTTATT-ATGATCATGAAAAGA-TCTGATGTACAAA 288 consensus_4010#1 ATCCATTTAATTTTTAATGTGACTTTTATTTATGATCATGAAAAGAATCTGATG------ 270 ************** *************** *************** ******* consensus_4010#0 TTACGTAATATAATACAGATATATTGGTAAAACAATTATTGCAAATATCGTCTATAA 345 consensus_4010#1 --------------------------------------------------------- |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||