These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_404#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 636 fasta sequence [CGAGGCCAAGATTCGGCACGAGGGCCGAAGCACGNGGCCCCGCACCTCACGCACATGGTAGTTCGGAGAGATGCAACGTCTGAGCAGGGGGTTGGTGGGACGGGGTGACGTGCCGGTCACGGCGGGCAGGAGAGATCGCCACCCGGGCATTTGATCTGCGCCGCCAGGTCCTGGATGCGCTGGCGCGTCAGCGTGATCTTGCATTCGNNNNNNNNNNNTGGCGAGAGACTTCCATTGTCGTCGGGCGTCGACGCGTTGTATCCGGTCCGCAGGTTGCACTCGAGGTCCCGGAACGTGATCCACGCCCGCTCGGCGGCAACCAGATTGCGCCGGCCATTGTCGTCGAGTTTGCTACGCAACGTCGTNNNNNNNNNGGTTCAGTTCTGCATCGACCCGATCGAATGCCTGCCCCGTGCAGAAACCCGCCTCCATCTGGTTTACGGGCTGGTTGCAATCCGCTTGCGCCCCGAACCCAGCTGTGGGGACGAGAAGCAGGATGGCGACAAGGGCTACCGCGGATTGGATGGGTGGCCAGCCTGCCGGTCATCGATCGTCGGCCGCCGAAAGCGTGCTGCGAGGGCGGAATCCGTAATATCCGCGGTCGGCGTCGTAAAGGACGTCGAAGCCATTGAGGAC] [+] EMBL CD080924 [CGAGGCCAAGATTCGGCACGAGGGCCGAAGCACGNGGCCCCGCACCTCACGCACATGGTAGTTCGGAGAGATGCAACGTCTGAGCAGGGGGTTGGTGGGACGGGGTGACGTGCCGGTCACGGCGGGCAGGAGAGATCGCCACCCGGGCATTTGATCTGCGCCGCCAGGTCCTGGATGCGCTGGCGCGTCAGCGTGATCTTGCATTCGNNNNNNNNNNNTGGCGAGAGACTTCCATTGTCGTCGGGCGTCGACGCGTTGTATCCGGTCCGCAGGTTGCACTCGAGGTCCCGGAACGTGATCCACGCCCGCTCGGCGGCAACCAGATTGCGCCGGCCATTGTCGTCGAGTTTGCTACGCAACGTCGTNNNNNNNNNGGTTCAGTTCTGCATCGACCCGATCGAATGCCTGCCCCGTGCAGAAACCCGCCTCCATCTGGTTTACGGGCTGGTTGCAATCCGCTTGCGCCCCGAACCCAGCTGTGGGGACGAGAAGCAGGATGGCGACAAGGGCTACCGCGGATTGGATGGGTGGCCAGCCTGCCGGTCATCGATCGTCGGCCGCCGAAAGCGTGCTGCGAGGGCGGAATCCGTAATATCCGCGGTCGGCGTCGTAAAGGACGTCGAAGCCATTGAGGAC] consensusID : consensus_404#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 597 fasta sequence [CCGCCTCCATCTGGTTNACGGGCTGGTTGCAATCCGCTTGCGCCCCGAACCCAGCTGTGGGGACGAGAAGCAGGATGGCGACAAGGGCTTTGCGTAACATGGGAGACTCGGGCATCGAACCGCGGATTGGATGGGTGGCCAGCCTGCCGGTCATCGATCGTCGGCCGCCGAAAGCGTGCTGCGAGGGCGGAATCCGTAATATCCGCGGTCGGCGTCGTAGAGGACGTCGAAGCCATTGAGGACGTGCAGACCCGTGTTGACGAAGGGCTGCGGGCGGGTTGTATTGAGGACGATGCGCTCGGGCGCGAGCGGCGAGGCGTGATCGCCGACAATGATCGCGTAGCCGGCCGAGTCGCCGAAGCGGAAGTTCAGGCGCGTTCCGGACCGGAGGACGCCGTGACCAGCCGCATCGGTCCGGACGCTGTCCGCGACCTGCGCAGGCGGCAGCGTCAGGAACATGCCGGTGACGCCGGTGTCGAGAAGCGCGCGCCCGCAGACGCCCGGCTCCCGCCCGTCGACGGTGATGCAAGCGGGGACGCCAAGCCAGTCCCCCGGTACGTGCGGGTGCGGATCGAGCTTCACGAAGCGGAAGCGGCC] [-] EMBL CD074758 [CCGCCTCCATCTGGTTNACGGGCTGGTTGCAATCCGCTTGCGCCCCGAACCCAGCTGTGGGGACGAGAAGCAGGATGGCGACAAGGGCTTTGCGTAACATGGGAGACTCGGGCATCGAACCGCGGATTGGATGGGTGGCCAGCCTGCCGGTCATCGATCGTCGGCCGCCGAAAGCGTGCTGCGAGGGCGGAATCCGTAATATCCGCGGTCGGCGTCGTAGAGGACGTCGAAGCCATTGAGGACGTGCAGACCCGTGTTGACGAAGGGCTGCGGGCGGGTTGTATTGAGGACGATGCGCTCGGGCGCGAGCGGCGAGGCGTGATCGCCGACAATGATCGCGTAGCCGGCCGAGTCGCCGAAGCGGAAGTTCAGGCGCGTTCCGGACCGGAGGACGCCGTGACCAGCCGCATCGGTCCGGACGCTGTCCGCGACCTGCGCAGGCGGCAGCGTCAGGAACATGCCGGTGACGCCGGTGTCGAGAAGCGCGCGCCCGCAGACGCCCGGCTCCCGCCCGTCGACGGTGATGCAAGCGGGGACGCCAAGCCAGTCCCCCGGTACGTGCGGGTGCGGATCGAGCTTCACGAAGCGGAAGCGGCC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_404#0 CGAGGCCAAGATTCGGCACGAGGGCCGAAGCACGNGGCCCCGCACCTCACGCACATGGTA 60 consensus_404#1 --CCGCCTCCATCTGGTTNACGGGCTG--GTTGCAATCCGCTTGCGCCCCGAACCCAGCT 56 *** ** ** **** * * ** * * * ** ** * consensus_404#0 GTTCGGA-GAGATGCAACGTCTGAGCAGGGGGTTGGTGGGACG-GGGTGACGTGCCGGTC 118 consensus_404#1 GTGGGGACGAGAAGCAGGATGGCGACAAGGGCTTTGCGTAACATGGGAGACTCGGGCATC 116 ** *** **** *** * ** *** ** * * ** *** *** * ** consensus_404#0 --ACGGCGGGCAGGAGAGATCGCCACCCGGGCATTTGATCTGCGCCGCCAGGTCCTGGAT 176 consensus_404#1 GAACCGCGGATTGGATGGGTGGCCAGCCTGCCGGTCA---TCGATCGTCGGCCGCCGAAA 173 ** **** *** * * **** ** * * * * ** * * * * * consensus_404#0 GCGCTGGCGCGTCAGCGTGATCTTGCATTCGNNNNNNNNNNNTGGCGAGAGACTTCCATT 236 consensus_404#1 GCG-TGCTGCGAGGGCGGAATCCGTAATATCCGCGGTCGGCGTCGTAGAGGACGTCGAA- 231 *** ** *** *** *** ** * * *** ** * consensus_404#0 GTCGTCGGGCGTCGACGCGTTGTATCCGGTCCGCAGGTTGCACTCGAGGTCC-CGGAACG 295 consensus_404#1 GCCATTGAG-GACGTGCAGACCCGTGTTGACGAAGGGCTGCGGGCGGGTTGTATTGAGGA 290 * * * * * * ** * * * * ** *** ** * * ** consensus_404#0 TGATCCACGCCCGCTCG-GCGGCAACCAGATTGCGCCGGCCATTGTCGTCGAGTTTGCTA 354 consensus_404#1 CGATGCGCTCGGGCGCGAGCGGCGAGGCGTGATCGCCGACAATGATCGCGTAGCCGGCCG 350 *** * * * ** ** ***** * * ***** * ** *** ** ** consensus_404#0 CGCAACGTCGTNNNNNNNNNGGTTCAGTTCTGCATCGACCCGATCGAATGCCTGCCCCGT 414 consensus_404#1 AG-----TCGCCGAAGCGGAAGTTCAGGCGCGTTCCGGACCGGAGGA-----CGCCGTGA 400 * *** ****** * ** *** ** *** * consensus_404#0 GCAGAAACCCGCCTCCATCTGGTTTACGGGCTGGTTGCAATCCGCTTGCGCCCCGAACCC 474 consensus_404#1 CCAG----CCGCATCGGTCCGGAC-----GCTGTCCGCGACCTGCGCAGGCGGCAGCGTC 451 *** **** ** ** ** **** ** * * ** ** * * consensus_404#0 AGCTGTGGGGACGAGAAGCAGGATGGCGACAAGGGCTACCGCGGATTGGATGGGTGGCCA 534 consensus_404#1 AGGAACATGCCGGTGACGCCGG-TGTCGAGAAGCGCGCGCCCG---CAGACGCCCGGCT- 506 ** * * ** ** ** ** *** *** ** * ** ** * *** consensus_404#0 GCCTGCCGGTCATCGATCGTCGGCCGCCGAAAGCGTGCTGCGAGGGCGGAATCCGTAATA 594 consensus_404#1 -CCCGCCCGTCGACGGTGAT--GCAAGCGGGGACGC------CAAGCCAGTCCCCCGGTA 557 ** *** *** ** * * ** ** ** ** ** ** consensus_404#0 TCCGCGGTCGGCGTCGTAAAGGACGTCGAAGCCATTGAGGAC 636 consensus_404#1 CGTGCGGGTGCGG--ATCGAGCTTCACGAAGCGGAAGCGGCC 597 **** * * * ** ****** * ** * |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||