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These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_4067#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 1393 fasta sequence
[CTACAGAGTCGATTTCACCGATTAAAACACAAGCTGATGACGTTATAAAGAAGTATGGCTTTTCGATCTCAAGACGTAAACGGAAGCTAAGTCGACCATGTAAAATACCTCAAACTTCTGTTGTTTCTGATCCTATCGAACCTTTACCTGCTACAACTGCTTCATCACCAACTTCCGTTCCAGCTCAACAAATCTCGAAAGCAGTCACTGAAATTGTAACACCGATGAAAAGTGGACCAACAAATGGTTTGTTTTTACCTGTCTCAGCAGTTACACTTCTTCCTCATGTGAGTGTTTTTTCCCTACCTGTAACAGTACTATCAACTGTCCACCGCCCCATTTTACCTCGAATTCGCACTGATAAACAGTCTATTCCCCGTCCTGTTAACAGTTATAATTTGCAGACAGTTATTTCGCCTCAATTAAAACATACAACGTCATCTAATTCACTTCCCAAGAATTCCACCAAAGAATCCATAAACTCAACAGATGATTCAAGTGTCCTTAATCGTCGATATGCCAAATCATTTATATGCAATCAGTGTCGGAAACCATTTACATCATTAACTTTACTATGTGAACACACATTCGCAGTGCATAAAGCATTTAGGTGTACTATATGCGGTGCCCAATTTACCCAACGATCCAATCTTCAACGTCATTCTCTTCGTCATGTTGGTTTCAAACCTTTCGTATGTAAGATATGCGATAAATCTTATTATCGTAAAGATCATCTTGTTCGACATATTGAACTAACACATCCTGGTTGTGATCCACGTACAAATCTTACTGTGAAACTAAGTTCAGCTGAATGTCTGGATTATCTAGATCAAATAAATAAACAGGATAATACAAATTCTGAACAGATGCAAATATCATGTCAAAACACCACTAATAATAATACTCCTGAAATCGCTGTCAAACAAGATGAAAATGATTCCCAAGAAAAATTATGCATTCTAGTTTCTCAGCAACAAGAACAATCTGGTATTTGCTCACAATCACATCAAATATGCATTAGTATAAATTCCTAAAAACCAATTGTTGTTATTGTTTCCCAGAAAAACCAAATCTCGTCATATCACTGTCTTCTTTTTTACCAACATAAACAGCTATTGCTTTTTCTTACTTTTCTATTGTTCGTTGTTTTGTTTGTTTGTTTTTTTCTTTTTTAGAAAATTTTTTTTTTACAATCTAGCTATTTTCTACTTTCATATTTTGTATAAATTAATGACCATTATCAATTTGAGAAAATCATTACCTTCATAATGACTGATTATGTATGTATCATTGGTTGGTCTATAAAGTTACTTTTTGAATTATAATTTATTAATGTGTTTGCTTGTGATAACGAATGATAAGCGAAATCTATAATTGTATAAAAAATAAAAAA]
[+] EMBL SMZNFIPR [CTACAGAGTCGATTTCACCGATTAAAACACAAGCTGATGACGTTATAAAGAAGTATGGCTTTTCGATCTCAAGACGTAAACGGAAGCTAAGTCGACCATGTAAAATACCTCAAACTTCTGTTGTTTCTGATCCTATCGAACCTTTACCTGCTACAACTGCTTCATCACCAACTTCCGTTCCAGCTCAACAAATCTCGAAAGCAGTCACTGAAATTGTAACACCGATGAAAAGTGGACCAACAAATGGTTTGTTTTTACCTGTCTCAGCAGTTACACTTCTTCCTCATGTGAGTGTTTTTTCCCTACCTGTAACAGTACTATCAACTGTCCACCGCCCCATTTTACCTCGAATTCGCACTGATAAACAGTCTATTCCCCGTCCTGTTAACAGTTATAATTTGCAGACAGTTATTTCGCCTCAATTAAAACATACAACGTCATCTAATTCACTTCCCAAGAATTCCACCAAAGAATCCATAAACTCAACAGATGATTCAAGTGTCCTTAATCGTCGATATGCCAAATCATTTATATGCAATCAGTGTCGGAAACCATTTACATCATTAACTTTACTATGTGAACACACATTCGCAGTGCATAAAGCATTTAGGTGTACTATATGCGGTGCCCAATTTACCCAACGATCCAATCTTCAACGTCATTCTCTTCGTCATGTTGGTTTCAAACCTTTCGTATGTAAGATATGCGATAAATCTTATTATCGTAAAGATCATCTTGTTCGACATATTGAACTAACACATCCTGGTTGTGATCCACGTACAAATCTTACTGTGAAACTAAGTTCAGCTGAATGTCTGGATTATCTAGATCAAATAAATAAACAGGATAATACAAATTCTGAACAGATGCAAATATCATGTCAAAACACCACTAATAATAATACTCCTGAAATCGCTGTCAAACAAGATGAAAATGATTCCCAAGAAAAATTATGCATTCTAGTTTCTCAGCAACAAGAACAATCTGGTATTTGCTCACAATCACATCAAATATGCATTAGTATAAATTCCTAAAAACCAATTGTTGTTATTGTTTCCCAGAAAAACCAAATCTCGTCATATCACTGTCTTCTTTTTTACCAACATAAACAGCTATTGCTTTTTCTTACTTTTCTATTGTTCGTTGTTTTGTTTGTTTGTTTTTTTCTTTTTTAGAAAATTTTTTTTTTACAATCTAGCTATTTTCTACTTTCATATTTTGTATAAATTAATGACCATTATCAATTTGAGAAAATCATTACCTTCATAATGACTGATTATGTATGTATCATTGGTTGGTCTATAAAGTTACTTTTTGAATTATAATTTATTAATGTGTTTGCTTGTGATAACGAATGATAAGCGAAATCTATAATTGTATAAAAAATAAAAAA]
consensusID : consensus_4067#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 434 fasta sequence
[CAAGAAAAATTATGCATTCTAGTTTCTCAGCAACAAGAACAATCTGGTATTTGCTCACAATCACATCAAATATGCACTAGTATAAATTCCTAAAAACCAATTGTTGTTATTGTTTCCCAGAAAAACCAAATCTCGTCATATCACTGTCTTCTTTTTTACCAACATAAACAGCTATTGCTTTTTCTTACTTTTCTATTGTTCGTTGTTTTGTTTGTTTGTTTTTTTCTTTTTTAGAAAATTTTTTTTTACAATCTAGCTATTTTCTACTTTCATATTTTGTATAAATTAATGACCATTATCAATTTGAGAAAATCATTACCTTCATAATGACTGATTATGTATGTATCATTGGTTGGTCTATAAAGTTACTTTTTGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAACATGCCATGCAGCTGCATTACCGTA]
[-] EMBL AI068349 [CAAGAAAAATTATGCATTCTAGTTTCTCAGCAACAAGAACAATCTGGTATTTGCTCACAATCACATCAAATATGCACTAGTATAAATTCCTAAAAACCAATTGTTGTTATTGTTTCCCAGAAAAACCAAATCTCGTCATATCACTGTCTTCTTTTTTACCAACATAAACAGCTATTGCTTTTTCTTACTTTTCTATTGTTCGTTGTTTTGTTTGTTTGTTTTTTTCTTTTTTAGAAAATTTTTTTTTACAATCTAGCTATTTTCTACTTTCATATTTTGTATAAATTAATGACCATTATCAATTTGAGAAAATCATTACCTTCATAATGACTGATTATGTATGTATCATTGGTTGGTCTATAAAGTTACTTTTTGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAACATGCCATGCAGCTGCATTACCGTA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_4067#0 CTACAGAGTCGATTTCACCGATTAAAACACAAGCTGATGACGTTATAAAGAAGTATGGCT 60
consensus_4067#1 ------------------------------------------------------------
consensus_4067#0 TTTCGATCTCAAGACGTAAACGGAAGCTAAGTCGACCATGTAAAATACCTCAAACTTCTG 120
consensus_4067#1 ------------------------------------------------------------
consensus_4067#0 TTGTTTCTGATCCTATCGAACCTTTACCTGCTACAACTGCTTCATCACCAACTTCCGTTC 180
consensus_4067#1 ------------------------------------------------------------
consensus_4067#0 CAGCTCAACAAATCTCGAAAGCAGTCACTGAAATTGTAACACCGATGAAAAGTGGACCAA 240
consensus_4067#1 ------------------------------------------------------------
consensus_4067#0 CAAATGGTTTGTTTTTACCTGTCTCAGCAGTTACACTTCTTCCTCATGTGAGTGTTTTTT 300
consensus_4067#1 ------------------------------------------------------------
consensus_4067#0 CCCTACCTGTAACAGTACTATCAACTGTCCACCGCCCCATTTTACCTCGAATTCGCACTG 360
consensus_4067#1 ------------------------------------------------------------
consensus_4067#0 ATAAACAGTCTATTCCCCGTCCTGTTAACAGTTATAATTTGCAGACAGTTATTTCGCCTC 420
consensus_4067#1 ------------------------------------------------------------
consensus_4067#0 AATTAAAACATACAACGTCATCTAATTCACTTCCCAAGAATTCCACCAAAGAATCCATAA 480
consensus_4067#1 ------------------------------------------------------------
consensus_4067#0 ACTCAACAGATGATTCAAGTGTCCTTAATCGTCGATATGCCAAATCATTTATATGCAATC 540
consensus_4067#1 ------------------------------------------------------------
consensus_4067#0 AGTGTCGGAAACCATTTACATCATTAACTTTACTATGTGAACACACATTCGCAGTGCATA 600
consensus_4067#1 ------------------------------------------------------------
consensus_4067#0 AAGCATTTAGGTGTACTATATGCGGTGCCCAATTTACCCAACGATCCAATCTTCAACGTC 660
consensus_4067#1 ------------------------------------------------------------
consensus_4067#0 ATTCTCTTCGTCATGTTGGTTTCAAACCTTTCGTATGTAAGATATGCGATAAATCTTATT 720
consensus_4067#1 ------------------------------------------------------------
consensus_4067#0 ATCGTAAAGATCATCTTGTTCGACATATTGAACTAACACATCCTGGTTGTGATCCACGTA 780
consensus_4067#1 ------------------------------------------------------------
consensus_4067#0 CAAATCTTACTGTGAAACTAAGTTCAGCTGAATGTCTGGATTATCTAGATCAAATAAATA 840
consensus_4067#1 ------------------------------------------------------------
consensus_4067#0 AACAGGATAATACAAATTCTGAACAGATGCAAATATCATGTCAAAACACCACTAATAATA 900
consensus_4067#1 ------------------------------------------------------------
consensus_4067#0 ATACTCCTGAAATCGCTGTCAAACAAGATGAAAATGATTCCCAAGAAAAATTATGCATTC 960
consensus_4067#1 -----------------------------------------CAAGAAAAATTATGCATTC 19
*******************
consensus_4067#0 TAGTTTCTCAGCAACAAGAACAATCTGGTATTTGCTCACAATCACATCAAATATGCATTA 1020
consensus_4067#1 TAGTTTCTCAGCAACAAGAACAATCTGGTATTTGCTCACAATCACATCAAATATGCACTA 79
********************************************************* **
consensus_4067#0 GTATAAATTCCTAAAAACCAATTGTTGTTATTGTTTCCCAGAAAAACCAAATCTCGTCAT 1080
consensus_4067#1 GTATAAATTCCTAAAAACCAATTGTTGTTATTGTTTCCCAGAAAAACCAAATCTCGTCAT 139
************************************************************
consensus_4067#0 ATCACTGTCTTCTTTTTTACCAACATAAACAGCTATTGCTTTTTCTTACTTTTCTATTGT 1140
consensus_4067#1 ATCACTGTCTTCTTTTTTACCAACATAAACAGCTATTGCTTTTTCTTACTTTTCTATTGT 199
************************************************************
consensus_4067#0 TCGTTGTTTTGTTTGTTTGTTTTTTTCTTTTTTAGAAAATTTTTTTTTTACAATCTAGCT 1200
consensus_4067#1 TCGTTGTTTTGTTTGTTTGTTTTTTTCTTTTTTAGAAAATTTTTTTTT-ACAATCTAGCT 258
************************************************ ***********
consensus_4067#0 ATTTTCTACTTTCATATTTTGTATAAATTAATGACCATTATCAATTTGAGAAAATCATTA 1260
consensus_4067#1 ATTTTCTACTTTCATATTTTGTATAAATTAATGACCATTATCAATTTGAGAAAATCATTA 318
************************************************************
consensus_4067#0 CCTTCATAATGACTGATTATGTATGTATCATTGGTTGGTCTATAAAGTTACTTTTTGAAT 1320
consensus_4067#1 CCTTCATAATGACTGATTATGTATGTATCATTGGTTGGTCTATAAAGTTACTTTTTGAAA 378
***********************************************************
consensus_4067#0 TATAATTTATTAATGTGTTTGCTTGTGATAACGAATGATAAGCGAAATCTATAATTGTAT 1380
consensus_4067#1 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAC--ATGCCATGC-AGCTGCATTACCGTA- 434
* ** * ** * *** *** * ** * * ** * ***
consensus_4067#0 AAAAAATAAAAAA 1393
consensus_4067#1 -------------
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| Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||