These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_4067#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 1393 fasta sequence [CTACAGAGTCGATTTCACCGATTAAAACACAAGCTGATGACGTTATAAAGAAGTATGGCTTTTCGATCTCAAGACGTAAACGGAAGCTAAGTCGACCATGTAAAATACCTCAAACTTCTGTTGTTTCTGATCCTATCGAACCTTTACCTGCTACAACTGCTTCATCACCAACTTCCGTTCCAGCTCAACAAATCTCGAAAGCAGTCACTGAAATTGTAACACCGATGAAAAGTGGACCAACAAATGGTTTGTTTTTACCTGTCTCAGCAGTTACACTTCTTCCTCATGTGAGTGTTTTTTCCCTACCTGTAACAGTACTATCAACTGTCCACCGCCCCATTTTACCTCGAATTCGCACTGATAAACAGTCTATTCCCCGTCCTGTTAACAGTTATAATTTGCAGACAGTTATTTCGCCTCAATTAAAACATACAACGTCATCTAATTCACTTCCCAAGAATTCCACCAAAGAATCCATAAACTCAACAGATGATTCAAGTGTCCTTAATCGTCGATATGCCAAATCATTTATATGCAATCAGTGTCGGAAACCATTTACATCATTAACTTTACTATGTGAACACACATTCGCAGTGCATAAAGCATTTAGGTGTACTATATGCGGTGCCCAATTTACCCAACGATCCAATCTTCAACGTCATTCTCTTCGTCATGTTGGTTTCAAACCTTTCGTATGTAAGATATGCGATAAATCTTATTATCGTAAAGATCATCTTGTTCGACATATTGAACTAACACATCCTGGTTGTGATCCACGTACAAATCTTACTGTGAAACTAAGTTCAGCTGAATGTCTGGATTATCTAGATCAAATAAATAAACAGGATAATACAAATTCTGAACAGATGCAAATATCATGTCAAAACACCACTAATAATAATACTCCTGAAATCGCTGTCAAACAAGATGAAAATGATTCCCAAGAAAAATTATGCATTCTAGTTTCTCAGCAACAAGAACAATCTGGTATTTGCTCACAATCACATCAAATATGCATTAGTATAAATTCCTAAAAACCAATTGTTGTTATTGTTTCCCAGAAAAACCAAATCTCGTCATATCACTGTCTTCTTTTTTACCAACATAAACAGCTATTGCTTTTTCTTACTTTTCTATTGTTCGTTGTTTTGTTTGTTTGTTTTTTTCTTTTTTAGAAAATTTTTTTTTTACAATCTAGCTATTTTCTACTTTCATATTTTGTATAAATTAATGACCATTATCAATTTGAGAAAATCATTACCTTCATAATGACTGATTATGTATGTATCATTGGTTGGTCTATAAAGTTACTTTTTGAATTATAATTTATTAATGTGTTTGCTTGTGATAACGAATGATAAGCGAAATCTATAATTGTATAAAAAATAAAAAA] [+] EMBL SMZNFIPR [CTACAGAGTCGATTTCACCGATTAAAACACAAGCTGATGACGTTATAAAGAAGTATGGCTTTTCGATCTCAAGACGTAAACGGAAGCTAAGTCGACCATGTAAAATACCTCAAACTTCTGTTGTTTCTGATCCTATCGAACCTTTACCTGCTACAACTGCTTCATCACCAACTTCCGTTCCAGCTCAACAAATCTCGAAAGCAGTCACTGAAATTGTAACACCGATGAAAAGTGGACCAACAAATGGTTTGTTTTTACCTGTCTCAGCAGTTACACTTCTTCCTCATGTGAGTGTTTTTTCCCTACCTGTAACAGTACTATCAACTGTCCACCGCCCCATTTTACCTCGAATTCGCACTGATAAACAGTCTATTCCCCGTCCTGTTAACAGTTATAATTTGCAGACAGTTATTTCGCCTCAATTAAAACATACAACGTCATCTAATTCACTTCCCAAGAATTCCACCAAAGAATCCATAAACTCAACAGATGATTCAAGTGTCCTTAATCGTCGATATGCCAAATCATTTATATGCAATCAGTGTCGGAAACCATTTACATCATTAACTTTACTATGTGAACACACATTCGCAGTGCATAAAGCATTTAGGTGTACTATATGCGGTGCCCAATTTACCCAACGATCCAATCTTCAACGTCATTCTCTTCGTCATGTTGGTTTCAAACCTTTCGTATGTAAGATATGCGATAAATCTTATTATCGTAAAGATCATCTTGTTCGACATATTGAACTAACACATCCTGGTTGTGATCCACGTACAAATCTTACTGTGAAACTAAGTTCAGCTGAATGTCTGGATTATCTAGATCAAATAAATAAACAGGATAATACAAATTCTGAACAGATGCAAATATCATGTCAAAACACCACTAATAATAATACTCCTGAAATCGCTGTCAAACAAGATGAAAATGATTCCCAAGAAAAATTATGCATTCTAGTTTCTCAGCAACAAGAACAATCTGGTATTTGCTCACAATCACATCAAATATGCATTAGTATAAATTCCTAAAAACCAATTGTTGTTATTGTTTCCCAGAAAAACCAAATCTCGTCATATCACTGTCTTCTTTTTTACCAACATAAACAGCTATTGCTTTTTCTTACTTTTCTATTGTTCGTTGTTTTGTTTGTTTGTTTTTTTCTTTTTTAGAAAATTTTTTTTTTACAATCTAGCTATTTTCTACTTTCATATTTTGTATAAATTAATGACCATTATCAATTTGAGAAAATCATTACCTTCATAATGACTGATTATGTATGTATCATTGGTTGGTCTATAAAGTTACTTTTTGAATTATAATTTATTAATGTGTTTGCTTGTGATAACGAATGATAAGCGAAATCTATAATTGTATAAAAAATAAAAAA] consensusID : consensus_4067#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 434 fasta sequence [CAAGAAAAATTATGCATTCTAGTTTCTCAGCAACAAGAACAATCTGGTATTTGCTCACAATCACATCAAATATGCACTAGTATAAATTCCTAAAAACCAATTGTTGTTATTGTTTCCCAGAAAAACCAAATCTCGTCATATCACTGTCTTCTTTTTTACCAACATAAACAGCTATTGCTTTTTCTTACTTTTCTATTGTTCGTTGTTTTGTTTGTTTGTTTTTTTCTTTTTTAGAAAATTTTTTTTTACAATCTAGCTATTTTCTACTTTCATATTTTGTATAAATTAATGACCATTATCAATTTGAGAAAATCATTACCTTCATAATGACTGATTATGTATGTATCATTGGTTGGTCTATAAAGTTACTTTTTGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAACATGCCATGCAGCTGCATTACCGTA] [-] EMBL AI068349 [CAAGAAAAATTATGCATTCTAGTTTCTCAGCAACAAGAACAATCTGGTATTTGCTCACAATCACATCAAATATGCACTAGTATAAATTCCTAAAAACCAATTGTTGTTATTGTTTCCCAGAAAAACCAAATCTCGTCATATCACTGTCTTCTTTTTTACCAACATAAACAGCTATTGCTTTTTCTTACTTTTCTATTGTTCGTTGTTTTGTTTGTTTGTTTTTTTCTTTTTTAGAAAATTTTTTTTTACAATCTAGCTATTTTCTACTTTCATATTTTGTATAAATTAATGACCATTATCAATTTGAGAAAATCATTACCTTCATAATGACTGATTATGTATGTATCATTGGTTGGTCTATAAAGTTACTTTTTGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAACATGCCATGCAGCTGCATTACCGTA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_4067#0 CTACAGAGTCGATTTCACCGATTAAAACACAAGCTGATGACGTTATAAAGAAGTATGGCT 60 consensus_4067#1 ------------------------------------------------------------ consensus_4067#0 TTTCGATCTCAAGACGTAAACGGAAGCTAAGTCGACCATGTAAAATACCTCAAACTTCTG 120 consensus_4067#1 ------------------------------------------------------------ consensus_4067#0 TTGTTTCTGATCCTATCGAACCTTTACCTGCTACAACTGCTTCATCACCAACTTCCGTTC 180 consensus_4067#1 ------------------------------------------------------------ consensus_4067#0 CAGCTCAACAAATCTCGAAAGCAGTCACTGAAATTGTAACACCGATGAAAAGTGGACCAA 240 consensus_4067#1 ------------------------------------------------------------ consensus_4067#0 CAAATGGTTTGTTTTTACCTGTCTCAGCAGTTACACTTCTTCCTCATGTGAGTGTTTTTT 300 consensus_4067#1 ------------------------------------------------------------ consensus_4067#0 CCCTACCTGTAACAGTACTATCAACTGTCCACCGCCCCATTTTACCTCGAATTCGCACTG 360 consensus_4067#1 ------------------------------------------------------------ consensus_4067#0 ATAAACAGTCTATTCCCCGTCCTGTTAACAGTTATAATTTGCAGACAGTTATTTCGCCTC 420 consensus_4067#1 ------------------------------------------------------------ consensus_4067#0 AATTAAAACATACAACGTCATCTAATTCACTTCCCAAGAATTCCACCAAAGAATCCATAA 480 consensus_4067#1 ------------------------------------------------------------ consensus_4067#0 ACTCAACAGATGATTCAAGTGTCCTTAATCGTCGATATGCCAAATCATTTATATGCAATC 540 consensus_4067#1 ------------------------------------------------------------ consensus_4067#0 AGTGTCGGAAACCATTTACATCATTAACTTTACTATGTGAACACACATTCGCAGTGCATA 600 consensus_4067#1 ------------------------------------------------------------ consensus_4067#0 AAGCATTTAGGTGTACTATATGCGGTGCCCAATTTACCCAACGATCCAATCTTCAACGTC 660 consensus_4067#1 ------------------------------------------------------------ consensus_4067#0 ATTCTCTTCGTCATGTTGGTTTCAAACCTTTCGTATGTAAGATATGCGATAAATCTTATT 720 consensus_4067#1 ------------------------------------------------------------ consensus_4067#0 ATCGTAAAGATCATCTTGTTCGACATATTGAACTAACACATCCTGGTTGTGATCCACGTA 780 consensus_4067#1 ------------------------------------------------------------ consensus_4067#0 CAAATCTTACTGTGAAACTAAGTTCAGCTGAATGTCTGGATTATCTAGATCAAATAAATA 840 consensus_4067#1 ------------------------------------------------------------ consensus_4067#0 AACAGGATAATACAAATTCTGAACAGATGCAAATATCATGTCAAAACACCACTAATAATA 900 consensus_4067#1 ------------------------------------------------------------ consensus_4067#0 ATACTCCTGAAATCGCTGTCAAACAAGATGAAAATGATTCCCAAGAAAAATTATGCATTC 960 consensus_4067#1 -----------------------------------------CAAGAAAAATTATGCATTC 19 ******************* consensus_4067#0 TAGTTTCTCAGCAACAAGAACAATCTGGTATTTGCTCACAATCACATCAAATATGCATTA 1020 consensus_4067#1 TAGTTTCTCAGCAACAAGAACAATCTGGTATTTGCTCACAATCACATCAAATATGCACTA 79 ********************************************************* ** consensus_4067#0 GTATAAATTCCTAAAAACCAATTGTTGTTATTGTTTCCCAGAAAAACCAAATCTCGTCAT 1080 consensus_4067#1 GTATAAATTCCTAAAAACCAATTGTTGTTATTGTTTCCCAGAAAAACCAAATCTCGTCAT 139 ************************************************************ consensus_4067#0 ATCACTGTCTTCTTTTTTACCAACATAAACAGCTATTGCTTTTTCTTACTTTTCTATTGT 1140 consensus_4067#1 ATCACTGTCTTCTTTTTTACCAACATAAACAGCTATTGCTTTTTCTTACTTTTCTATTGT 199 ************************************************************ consensus_4067#0 TCGTTGTTTTGTTTGTTTGTTTTTTTCTTTTTTAGAAAATTTTTTTTTTACAATCTAGCT 1200 consensus_4067#1 TCGTTGTTTTGTTTGTTTGTTTTTTTCTTTTTTAGAAAATTTTTTTTT-ACAATCTAGCT 258 ************************************************ *********** consensus_4067#0 ATTTTCTACTTTCATATTTTGTATAAATTAATGACCATTATCAATTTGAGAAAATCATTA 1260 consensus_4067#1 ATTTTCTACTTTCATATTTTGTATAAATTAATGACCATTATCAATTTGAGAAAATCATTA 318 ************************************************************ consensus_4067#0 CCTTCATAATGACTGATTATGTATGTATCATTGGTTGGTCTATAAAGTTACTTTTTGAAT 1320 consensus_4067#1 CCTTCATAATGACTGATTATGTATGTATCATTGGTTGGTCTATAAAGTTACTTTTTGAAA 378 *********************************************************** consensus_4067#0 TATAATTTATTAATGTGTTTGCTTGTGATAACGAATGATAAGCGAAATCTATAATTGTAT 1380 consensus_4067#1 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAC--ATGCCATGC-AGCTGCATTACCGTA- 434 * ** * ** * *** *** * ** * * ** * *** consensus_4067#0 AAAAAATAAAAAA 1393 consensus_4067#1 ------------- |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||