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Schistosoma mansoni
cluster # 4067 cluster # 4067       Sequences # 2       consensus # 2


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_4067#0 length = 1393 sequences # 1  
consensus_4067#1 length = 434 sequences # 1  

consensusID : consensus_4067#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 1393
fasta sequence
                              [CTACAGAGTCGATTTCACCGATTAAAACACAAGCTGATGACGTTATAAAGAAGTATGGCTTTTCGATCTCAAGACGTAAACGGAAGCTAAGTCGACCATGTAAAATACCTCAAACTTCTGTTGTTTCTGATCCTATCGAACCTTTACCTGCTACAACTGCTTCATCACCAACTTCCGTTCCAGCTCAACAAATCTCGAAAGCAGTCACTGAAATTGTAACACCGATGAAAAGTGGACCAACAAATGGTTTGTTTTTACCTGTCTCAGCAGTTACACTTCTTCCTCATGTGAGTGTTTTTTCCCTACCTGTAACAGTACTATCAACTGTCCACCGCCCCATTTTACCTCGAATTCGCACTGATAAACAGTCTATTCCCCGTCCTGTTAACAGTTATAATTTGCAGACAGTTATTTCGCCTCAATTAAAACATACAACGTCATCTAATTCACTTCCCAAGAATTCCACCAAAGAATCCATAAACTCAACAGATGATTCAAGTGTCCTTAATCGTCGATATGCCAAATCATTTATATGCAATCAGTGTCGGAAACCATTTACATCATTAACTTTACTATGTGAACACACATTCGCAGTGCATAAAGCATTTAGGTGTACTATATGCGGTGCCCAATTTACCCAACGATCCAATCTTCAACGTCATTCTCTTCGTCATGTTGGTTTCAAACCTTTCGTATGTAAGATATGCGATAAATCTTATTATCGTAAAGATCATCTTGTTCGACATATTGAACTAACACATCCTGGTTGTGATCCACGTACAAATCTTACTGTGAAACTAAGTTCAGCTGAATGTCTGGATTATCTAGATCAAATAAATAAACAGGATAATACAAATTCTGAACAGATGCAAATATCATGTCAAAACACCACTAATAATAATACTCCTGAAATCGCTGTCAAACAAGATGAAAATGATTCCCAAGAAAAATTATGCATTCTAGTTTCTCAGCAACAAGAACAATCTGGTATTTGCTCACAATCACATCAAATATGCATTAGTATAAATTCCTAAAAACCAATTGTTGTTATTGTTTCCCAGAAAAACCAAATCTCGTCATATCACTGTCTTCTTTTTTACCAACATAAACAGCTATTGCTTTTTCTTACTTTTCTATTGTTCGTTGTTTTGTTTGTTTGTTTTTTTCTTTTTTAGAAAATTTTTTTTTTACAATCTAGCTATTTTCTACTTTCATATTTTGTATAAATTAATGACCATTATCAATTTGAGAAAATCATTACCTTCATAATGACTGATTATGTATGTATCATTGGTTGGTCTATAAAGTTACTTTTTGAATTATAATTTATTAATGTGTTTGCTTGTGATAACGAATGATAAGCGAAATCTATAATTGTATAAAAAATAAAAAA]

[+] EMBL SMZNFIPR             [CTACAGAGTCGATTTCACCGATTAAAACACAAGCTGATGACGTTATAAAGAAGTATGGCTTTTCGATCTCAAGACGTAAACGGAAGCTAAGTCGACCATGTAAAATACCTCAAACTTCTGTTGTTTCTGATCCTATCGAACCTTTACCTGCTACAACTGCTTCATCACCAACTTCCGTTCCAGCTCAACAAATCTCGAAAGCAGTCACTGAAATTGTAACACCGATGAAAAGTGGACCAACAAATGGTTTGTTTTTACCTGTCTCAGCAGTTACACTTCTTCCTCATGTGAGTGTTTTTTCCCTACCTGTAACAGTACTATCAACTGTCCACCGCCCCATTTTACCTCGAATTCGCACTGATAAACAGTCTATTCCCCGTCCTGTTAACAGTTATAATTTGCAGACAGTTATTTCGCCTCAATTAAAACATACAACGTCATCTAATTCACTTCCCAAGAATTCCACCAAAGAATCCATAAACTCAACAGATGATTCAAGTGTCCTTAATCGTCGATATGCCAAATCATTTATATGCAATCAGTGTCGGAAACCATTTACATCATTAACTTTACTATGTGAACACACATTCGCAGTGCATAAAGCATTTAGGTGTACTATATGCGGTGCCCAATTTACCCAACGATCCAATCTTCAACGTCATTCTCTTCGTCATGTTGGTTTCAAACCTTTCGTATGTAAGATATGCGATAAATCTTATTATCGTAAAGATCATCTTGTTCGACATATTGAACTAACACATCCTGGTTGTGATCCACGTACAAATCTTACTGTGAAACTAAGTTCAGCTGAATGTCTGGATTATCTAGATCAAATAAATAAACAGGATAATACAAATTCTGAACAGATGCAAATATCATGTCAAAACACCACTAATAATAATACTCCTGAAATCGCTGTCAAACAAGATGAAAATGATTCCCAAGAAAAATTATGCATTCTAGTTTCTCAGCAACAAGAACAATCTGGTATTTGCTCACAATCACATCAAATATGCATTAGTATAAATTCCTAAAAACCAATTGTTGTTATTGTTTCCCAGAAAAACCAAATCTCGTCATATCACTGTCTTCTTTTTTACCAACATAAACAGCTATTGCTTTTTCTTACTTTTCTATTGTTCGTTGTTTTGTTTGTTTGTTTTTTTCTTTTTTAGAAAATTTTTTTTTTACAATCTAGCTATTTTCTACTTTCATATTTTGTATAAATTAATGACCATTATCAATTTGAGAAAATCATTACCTTCATAATGACTGATTATGTATGTATCATTGGTTGGTCTATAAAGTTACTTTTTGAATTATAATTTATTAATGTGTTTGCTTGTGATAACGAATGATAAGCGAAATCTATAATTGTATAAAAAATAAAAAA]


>consensus_4067#0 CTACAGAGTCGATTTCACCGATTAAAACACAAGCTGATGACGTTATAAAGAAGTATGGCT TTTCGATCTCAAGACGTAAACGGAAGCTAAGTCGACCATGTAAAATACCTCAAACTTCTG TTGTTTCTGATCCTATCGAACCTTTACCTGCTACAACTGCTTCATCACCAACTTCCGTTC CAGCTCAACAAATCTCGAAAGCAGTCACTGAAATTGTAACACCGATGAAAAGTGGACCAA CAAATGGTTTGTTTTTACCTGTCTCAGCAGTTACACTTCTTCCTCATGTGAGTGTTTTTT CCCTACCTGTAACAGTACTATCAACTGTCCACCGCCCCATTTTACCTCGAATTCGCACTG ATAAACAGTCTATTCCCCGTCCTGTTAACAGTTATAATTTGCAGACAGTTATTTCGCCTC AATTAAAACATACAACGTCATCTAATTCACTTCCCAAGAATTCCACCAAAGAATCCATAA ACTCAACAGATGATTCAAGTGTCCTTAATCGTCGATATGCCAAATCATTTATATGCAATC AGTGTCGGAAACCATTTACATCATTAACTTTACTATGTGAACACACATTCGCAGTGCATA AAGCATTTAGGTGTACTATATGCGGTGCCCAATTTACCCAACGATCCAATCTTCAACGTC ATTCTCTTCGTCATGTTGGTTTCAAACCTTTCGTATGTAAGATATGCGATAAATCTTATT ATCGTAAAGATCATCTTGTTCGACATATTGAACTAACACATCCTGGTTGTGATCCACGTA CAAATCTTACTGTGAAACTAAGTTCAGCTGAATGTCTGGATTATCTAGATCAAATAAATA AACAGGATAATACAAATTCTGAACAGATGCAAATATCATGTCAAAACACCACTAATAATA ATACTCCTGAAATCGCTGTCAAACAAGATGAAAATGATTCCCAAGAAAAATTATGCATTC TAGTTTCTCAGCAACAAGAACAATCTGGTATTTGCTCACAATCACATCAAATATGCATTA GTATAAATTCCTAAAAACCAATTGTTGTTATTGTTTCCCAGAAAAACCAAATCTCGTCAT ATCACTGTCTTCTTTTTTACCAACATAAACAGCTATTGCTTTTTCTTACTTTTCTATTGT TCGTTGTTTTGTTTGTTTGTTTTTTTCTTTTTTAGAAAATTTTTTTTTTACAATCTAGCT ATTTTCTACTTTCATATTTTGTATAAATTAATGACCATTATCAATTTGAGAAAATCATTA CCTTCATAATGACTGATTATGTATGTATCATTGGTTGGTCTATAAAGTTACTTTTTGAAT TATAATTTATTAATGTGTTTGCTTGTGATAACGAATGATAAGCGAAATCTATAATTGTAT AAAAAATAAAAAA



consensusID : consensus_4067#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 434
fasta sequence
                              [CAAGAAAAATTATGCATTCTAGTTTCTCAGCAACAAGAACAATCTGGTATTTGCTCACAATCACATCAAATATGCACTAGTATAAATTCCTAAAAACCAATTGTTGTTATTGTTTCCCAGAAAAACCAAATCTCGTCATATCACTGTCTTCTTTTTTACCAACATAAACAGCTATTGCTTTTTCTTACTTTTCTATTGTTCGTTGTTTTGTTTGTTTGTTTTTTTCTTTTTTAGAAAATTTTTTTTTACAATCTAGCTATTTTCTACTTTCATATTTTGTATAAATTAATGACCATTATCAATTTGAGAAAATCATTACCTTCATAATGACTGATTATGTATGTATCATTGGTTGGTCTATAAAGTTACTTTTTGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAACATGCCATGCAGCTGCATTACCGTA]

[-] EMBL AI068349             [CAAGAAAAATTATGCATTCTAGTTTCTCAGCAACAAGAACAATCTGGTATTTGCTCACAATCACATCAAATATGCACTAGTATAAATTCCTAAAAACCAATTGTTGTTATTGTTTCCCAGAAAAACCAAATCTCGTCATATCACTGTCTTCTTTTTTACCAACATAAACAGCTATTGCTTTTTCTTACTTTTCTATTGTTCGTTGTTTTGTTTGTTTGTTTTTTTCTTTTTTAGAAAATTTTTTTTTACAATCTAGCTATTTTCTACTTTCATATTTTGTATAAATTAATGACCATTATCAATTTGAGAAAATCATTACCTTCATAATGACTGATTATGTATGTATCATTGGTTGGTCTATAAAGTTACTTTTTGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAACATGCCATGCAGCTGCATTACCGTA]


>consensus_4067#1 CAAGAAAAATTATGCATTCTAGTTTCTCAGCAACAAGAACAATCTGGTATTTGCTCACAA TCACATCAAATATGCACTAGTATAAATTCCTAAAAACCAATTGTTGTTATTGTTTCCCAG AAAAACCAAATCTCGTCATATCACTGTCTTCTTTTTTACCAACATAAACAGCTATTGCTT TTTCTTACTTTTCTATTGTTCGTTGTTTTGTTTGTTTGTTTTTTTCTTTTTTAGAAAATT TTTTTTTACAATCTAGCTATTTTCTACTTTCATATTTTGTATAAATTAATGACCATTATC AATTTGAGAAAATCATTACCTTCATAATGACTGATTATGTATGTATCATTGGTTGGTCTA TAAAGTTACTTTTTGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAACATGCCATGCA GCTGCATTACCGTA



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_4067#0      CTACAGAGTCGATTTCACCGATTAAAACACAAGCTGATGACGTTATAAAGAAGTATGGCT 60
consensus_4067#1      ------------------------------------------------------------
                                                                                  

consensus_4067#0      TTTCGATCTCAAGACGTAAACGGAAGCTAAGTCGACCATGTAAAATACCTCAAACTTCTG 120
consensus_4067#1      ------------------------------------------------------------
                                                                                  

consensus_4067#0      TTGTTTCTGATCCTATCGAACCTTTACCTGCTACAACTGCTTCATCACCAACTTCCGTTC 180
consensus_4067#1      ------------------------------------------------------------
                                                                                  

consensus_4067#0      CAGCTCAACAAATCTCGAAAGCAGTCACTGAAATTGTAACACCGATGAAAAGTGGACCAA 240
consensus_4067#1      ------------------------------------------------------------
                                                                                  

consensus_4067#0      CAAATGGTTTGTTTTTACCTGTCTCAGCAGTTACACTTCTTCCTCATGTGAGTGTTTTTT 300
consensus_4067#1      ------------------------------------------------------------
                                                                                  

consensus_4067#0      CCCTACCTGTAACAGTACTATCAACTGTCCACCGCCCCATTTTACCTCGAATTCGCACTG 360
consensus_4067#1      ------------------------------------------------------------
                                                                                  

consensus_4067#0      ATAAACAGTCTATTCCCCGTCCTGTTAACAGTTATAATTTGCAGACAGTTATTTCGCCTC 420
consensus_4067#1      ------------------------------------------------------------
                                                                                  

consensus_4067#0      AATTAAAACATACAACGTCATCTAATTCACTTCCCAAGAATTCCACCAAAGAATCCATAA 480
consensus_4067#1      ------------------------------------------------------------
                                                                                  

consensus_4067#0      ACTCAACAGATGATTCAAGTGTCCTTAATCGTCGATATGCCAAATCATTTATATGCAATC 540
consensus_4067#1      ------------------------------------------------------------
                                                                                  

consensus_4067#0      AGTGTCGGAAACCATTTACATCATTAACTTTACTATGTGAACACACATTCGCAGTGCATA 600
consensus_4067#1      ------------------------------------------------------------
                                                                                  

consensus_4067#0      AAGCATTTAGGTGTACTATATGCGGTGCCCAATTTACCCAACGATCCAATCTTCAACGTC 660
consensus_4067#1      ------------------------------------------------------------
                                                                                  

consensus_4067#0      ATTCTCTTCGTCATGTTGGTTTCAAACCTTTCGTATGTAAGATATGCGATAAATCTTATT 720
consensus_4067#1      ------------------------------------------------------------
                                                                                  

consensus_4067#0      ATCGTAAAGATCATCTTGTTCGACATATTGAACTAACACATCCTGGTTGTGATCCACGTA 780
consensus_4067#1      ------------------------------------------------------------
                                                                                  

consensus_4067#0      CAAATCTTACTGTGAAACTAAGTTCAGCTGAATGTCTGGATTATCTAGATCAAATAAATA 840
consensus_4067#1      ------------------------------------------------------------
                                                                                  

consensus_4067#0      AACAGGATAATACAAATTCTGAACAGATGCAAATATCATGTCAAAACACCACTAATAATA 900
consensus_4067#1      ------------------------------------------------------------
                                                                                  

consensus_4067#0      ATACTCCTGAAATCGCTGTCAAACAAGATGAAAATGATTCCCAAGAAAAATTATGCATTC 960
consensus_4067#1      -----------------------------------------CAAGAAAAATTATGCATTC 19
                                                               *******************

consensus_4067#0      TAGTTTCTCAGCAACAAGAACAATCTGGTATTTGCTCACAATCACATCAAATATGCATTA 1020
consensus_4067#1      TAGTTTCTCAGCAACAAGAACAATCTGGTATTTGCTCACAATCACATCAAATATGCACTA 79
                      ********************************************************* **

consensus_4067#0      GTATAAATTCCTAAAAACCAATTGTTGTTATTGTTTCCCAGAAAAACCAAATCTCGTCAT 1080
consensus_4067#1      GTATAAATTCCTAAAAACCAATTGTTGTTATTGTTTCCCAGAAAAACCAAATCTCGTCAT 139
                      ************************************************************

consensus_4067#0      ATCACTGTCTTCTTTTTTACCAACATAAACAGCTATTGCTTTTTCTTACTTTTCTATTGT 1140
consensus_4067#1      ATCACTGTCTTCTTTTTTACCAACATAAACAGCTATTGCTTTTTCTTACTTTTCTATTGT 199
                      ************************************************************

consensus_4067#0      TCGTTGTTTTGTTTGTTTGTTTTTTTCTTTTTTAGAAAATTTTTTTTTTACAATCTAGCT 1200
consensus_4067#1      TCGTTGTTTTGTTTGTTTGTTTTTTTCTTTTTTAGAAAATTTTTTTTT-ACAATCTAGCT 258
                      ************************************************ ***********

consensus_4067#0      ATTTTCTACTTTCATATTTTGTATAAATTAATGACCATTATCAATTTGAGAAAATCATTA 1260
consensus_4067#1      ATTTTCTACTTTCATATTTTGTATAAATTAATGACCATTATCAATTTGAGAAAATCATTA 318
                      ************************************************************

consensus_4067#0      CCTTCATAATGACTGATTATGTATGTATCATTGGTTGGTCTATAAAGTTACTTTTTGAAT 1320
consensus_4067#1      CCTTCATAATGACTGATTATGTATGTATCATTGGTTGGTCTATAAAGTTACTTTTTGAAA 378
                      *********************************************************** 

consensus_4067#0      TATAATTTATTAATGTGTTTGCTTGTGATAACGAATGATAAGCGAAATCTATAATTGTAT 1380
consensus_4067#1      AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAC--ATGCCATGC-AGCTGCATTACCGTA- 434
                       * **   *  **              * ***  ***  * ** *  *  ** *  *** 

consensus_4067#0      AAAAAATAAAAAA 1393
consensus_4067#1      -------------
                                   




Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner    (hubert.wassner@noos.fr)