cluster # 4070

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Schistosoma mansoni
cluster # 4070 cluster # 4070 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_4070#0 length = 940 sequences # 1

consensus_4070#1 length = 656 sequences # 1

consensusID : consensus_4070#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 940
fasta sequence

                              [CACCGAGGCCAANAATTCGGCACGAGGTCGAATGACTCGTCGAACACTTTCAAAAGGCGAACTGAACGTCTAAGTGATGATGAAGATGATTAAGAAAAACGTGAGTTAACTGATTTATAGAGTTTGTGGTCTTAATAAGTGCAACAATTTGTTTGTGTCTTGATTATTTTCTTTTCATGAACTTGGTATGAAATATGTTATTCGACTGATAAATTATTCACCCATGAACCTAAATTTTGTGTATAATTTCAGGGGTGTATTCAATTTATTCATTCTCTTGTCCGTAGTAAATGTCCTCATATTATGTTCGTCATAATTCACTTGTTTACTTGTCGCTTTTTCAGATAATTAATAGATCCGACTCACGATAATTCAGTAAAGTAAGACTTAAGTCTTTCTTCTCAAACAAAAAAACTGTCATGTTCTTCATATATTTCCATCTGTTTTGAAACGGAGAGTTTTCGTGAACTTTAGTCGAAACCGAGACTTACGACTCTAACTTAGTCAAAAATTCTGAAAAAATTTACATATACTGGCATATAGAAATTTGTGTGTCTTTACTTACTGCATGACTAGTTTATGAAAATGATGTTGGCTACAGGTTACCTGTTGAGAATGCGATCTTTTCTGGATTGTTTTTATCAATCATCAAACATAAAATAATGTGTTATGTTTCGTATTTCATCCTCGTGGAGTTTAGAAATATATAGACTTACCGAATTCAGTATTGCTTGAAATGAAGAAACTACCCTTTAGCTCAGTGANTTAATCTACTTGATAGTTTTCTCTACAAAATGATGATTATATTATATTATGAGCACGTATATTGCTTCTTTACACGTTTAGATATGACTTTGNNATGAGATCTCGTCGGTCTGTACTGTTCTCTGATTACTATATCATAGCGAAAATCGNCATTCATGACTTTATTTATATGGAG]

[+] EMBL CD079701             [CACCGAGGCCAANAATTCGGCACGAGGTCGAATGACTCGTCGAACACTTTCAAAAGGCGAACTGAACGTCTAAGTGATGATGAAGATGATTAAGAAAAACGTGAGTTAACTGATTTATAGAGTTTGTGGTCTTAATAAGTGCAACAATTTGTTTGTGTCTTGATTATTTTCTTTTCATGAACTTGGTATGAAATATGTTATTCGACTGATAAATTATTCACCCATGAACCTAAATTTTGTGTATAATTTCAGGGGTGTATTCAATTTATTCATTCTCTTGTCCGTAGTAAATGTCCTCATATTATGTTCGTCATAATTCACTTGTTTACTTGTCGCTTTTTCAGATAATTAATAGATCCGACTCACGATAATTCAGTAAAGTAAGACTTAAGTCTTTCTTCTCAAACAAAAAAACTGTCATGTTCTTCATATATTTCCATCTGTTTTGAAACGGAGAGTTTTCGTGAACTTTAGTCGAAACCGAGACTTACGACTCTAACTTAGTCAAAAATTCTGAAAAAATTTACATATACTGGCATATAGAAATTTGTGTGTCTTTACTTACTGCATGACTAGTTTATGAAAATGATGTTGGCTACAGGTTACCTGTTGAGAATGCGATCTTTTCTGGATTGTTTTTATCAATCATCAAACATAAAATAATGTGTTATGTTTCGTATTTCATCCTCGTGGAGTTTAGAAATATATAGACTTACCGAATTCAGTATTGCTTGAAATGAAGAAACTACCCTTTAGCTCAGTGANTTAATCTACTTGATAGTTTTCTCTACAAAATGATGATTATATTATATTATGAGCACGTATATTGCTTCTTTACACGTTTAGATATGACTTTGNNATGAGATCTCGTCGGTCTGTACTGTTCTCTGATTACTATATCATAGCGAAAATCGNCATTCATGACTTTATTTATATGGAG]




>consensus_4070#0
CACCGAGGCCAANAATTCGGCACGAGGTCGAATGACTCGTCGAACACTTTCAAAAGGCGA
ACTGAACGTCTAAGTGATGATGAAGATGATTAAGAAAAACGTGAGTTAACTGATTTATAG
AGTTTGTGGTCTTAATAAGTGCAACAATTTGTTTGTGTCTTGATTATTTTCTTTTCATGA
ACTTGGTATGAAATATGTTATTCGACTGATAAATTATTCACCCATGAACCTAAATTTTGT
GTATAATTTCAGGGGTGTATTCAATTTATTCATTCTCTTGTCCGTAGTAAATGTCCTCAT
ATTATGTTCGTCATAATTCACTTGTTTACTTGTCGCTTTTTCAGATAATTAATAGATCCG
ACTCACGATAATTCAGTAAAGTAAGACTTAAGTCTTTCTTCTCAAACAAAAAAACTGTCA
TGTTCTTCATATATTTCCATCTGTTTTGAAACGGAGAGTTTTCGTGAACTTTAGTCGAAA
CCGAGACTTACGACTCTAACTTAGTCAAAAATTCTGAAAAAATTTACATATACTGGCATA
TAGAAATTTGTGTGTCTTTACTTACTGCATGACTAGTTTATGAAAATGATGTTGGCTACA
GGTTACCTGTTGAGAATGCGATCTTTTCTGGATTGTTTTTATCAATCATCAAACATAAAA
TAATGTGTTATGTTTCGTATTTCATCCTCGTGGAGTTTAGAAATATATAGACTTACCGAA
TTCAGTATTGCTTGAAATGAAGAAACTACCCTTTAGCTCAGTGANTTAATCTACTTGATA
GTTTTCTCTACAAAATGATGATTATATTATATTATGAGCACGTATATTGCTTCTTTACAC
GTTTAGATATGACTTTGNNATGAGATCTCGTCGGTCTGTACTGTTCTCTGATTACTATAT
CATAGCGAAAATCGNCATTCATGACTTTATTTATATGGAG

consensusID : consensus_4070#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 656
fasta sequence

                              [AATTAATAGATCCGACTCACGATAATTCAGTAAAGTAAGACTTAAGTCTTTCTTCTCAAACAAAAAAACTGTCATGTTCTTCATATATTTCCATCTGTTTTGAAACGGAGAGTTTTCGTGAACTTTAGTCGAAACCGAGACTTACGACTCTAACTTAGTCAAAAATTCTGAAAAAATTTACATATACTGGCATATAGAAATTTGTGTGTCTTTACTTACTGCATGACTAGTTTATGAAAATGATGTTGGCTACAGGTTACCTGTTGAGAATGCGATCTTTTCTGGATTGTTTTTATCAATCATCAAACATAAAATAATGTGTTATGTTTCGTATTTCATCCTCGTGGAGTTTAGAAATAATATAGACTTACCGAATTCAGTATTGCTTGAAATGAAGAACTTACCCTTAGCTTCAAGTGATTTAATCCTACTTGATAGTTTTTCTCTACAAAAATGGATGATATATATATATATATATGAGCACGTTATATTTGCTTCTTTTACCACGTTTTAGAATATTGAACTTTTGGAATGGAGATCTTCGTTTCGTGTCTGTTCACTGTTTTTCTTCTGGATTTAACTAATCATTCATTAGTCTGTAAATATCTGTACATATACATTGGACTTTTTATTTTTTAATAAAGGGATGGTGCTTA]

[-] EMBL CD073960             [AATTAATAGATCCGACTCACGATAATTCAGTAAAGTAAGACTTAAGTCTTTCTTCTCAAACAAAAAAACTGTCATGTTCTTCATATATTTCCATCTGTTTTGAAACGGAGAGTTTTCGTGAACTTTAGTCGAAACCGAGACTTACGACTCTAACTTAGTCAAAAATTCTGAAAAAATTTACATATACTGGCATATAGAAATTTGTGTGTCTTTACTTACTGCATGACTAGTTTATGAAAATGATGTTGGCTACAGGTTACCTGTTGAGAATGCGATCTTTTCTGGATTGTTTTTATCAATCATCAAACATAAAATAATGTGTTATGTTTCGTATTTCATCCTCGTGGAGTTTAGAAATAATATAGACTTACCGAATTCAGTATTGCTTGAAATGAAGAACTTACCCTTAGCTTCAAGTGATTTAATCCTACTTGATAGTTTTTCTCTACAAAAATGGATGATATATATATATATATATGAGCACGTTATATTTGCTTCTTTTACCACGTTTTAGAATATTGAACTTTTGGAATGGAGATCTTCGTTTCGTGTCTGTTCACTGTTTTTCTTCTGGATTTAACTAATCATTCATTAGTCTGTAAATATCTGTACATATACATTGGACTTTTTATTTTTTAATAAAGGGATGGTGCTTA]




>consensus_4070#1
AATTAATAGATCCGACTCACGATAATTCAGTAAAGTAAGACTTAAGTCTTTCTTCTCAAA
CAAAAAAACTGTCATGTTCTTCATATATTTCCATCTGTTTTGAAACGGAGAGTTTTCGTG
AACTTTAGTCGAAACCGAGACTTACGACTCTAACTTAGTCAAAAATTCTGAAAAAATTTA
CATATACTGGCATATAGAAATTTGTGTGTCTTTACTTACTGCATGACTAGTTTATGAAAA
TGATGTTGGCTACAGGTTACCTGTTGAGAATGCGATCTTTTCTGGATTGTTTTTATCAAT
CATCAAACATAAAATAATGTGTTATGTTTCGTATTTCATCCTCGTGGAGTTTAGAAATAA
TATAGACTTACCGAATTCAGTATTGCTTGAAATGAAGAACTTACCCTTAGCTTCAAGTGA
TTTAATCCTACTTGATAGTTTTTCTCTACAAAAATGGATGATATATATATATATATATGA
GCACGTTATATTTGCTTCTTTTACCACGTTTTAGAATATTGAACTTTTGGAATGGAGATC
TTCGTTTCGTGTCTGTTCACTGTTTTTCTTCTGGATTTAACTAATCATTCATTAGTCTGT
AAATATCTGTACATATACATTGGACTTTTTATTTTTTAATAAAGGGATGGTGCTTA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_4070#0      CACCGAGGCCAANAATTCGGCACGAGGTCGAATGACTCGTCGAACACTTTCAAAAGGCGA 60
consensus_4070#1      ------------------------------------------------------------
                                                                                  

consensus_4070#0      ACTGAACGTCTAAGTGATGATGAAGATGATTAAGAAAAACGTGAGTTAACTGATTTATAG 120
consensus_4070#1      ------------------------------------------------------------
                                                                                  

consensus_4070#0      AGTTTGTGGTCTTAATAAGTGCAACAATTTGTTTGTGTCTTGATTATTTTCTTTTCATGA 180
consensus_4070#1      ------------------------------------------------------------
                                                                                  

consensus_4070#0      ACTTGGTATGAAATATGTTATTCGACTGATAAATTATTCACCCATGAACCTAAATTTTGT 240
consensus_4070#1      ------------------------------------------------------------
                                                                                  

consensus_4070#0      GTATAATTTCAGGGGTGTATTCAATTTATTCATTCTCTTGTCCGTAGTAAATGTCCTCAT 300
consensus_4070#1      ------------------------------------------------------------
                                                                                  

consensus_4070#0      ATTATGTTCGTCATAATTCACTTGTTTACTTGTCGCTTTTTCAGATAATTAATAGATCCG 360
consensus_4070#1      ----------------------------------------------AATTAATAGATCCG 14
                                                                    **************

consensus_4070#0      ACTCACGATAATTCAGTAAAGTAAGACTTAAGTCTTTCTTCTCAAACAAAAAAACTGTCA 420
consensus_4070#1      ACTCACGATAATTCAGTAAAGTAAGACTTAAGTCTTTCTTCTCAAACAAAAAAACTGTCA 74
                      ************************************************************

consensus_4070#0      TGTTCTTCATATATTTCCATCTGTTTTGAAACGGAGAGTTTTCGTGAACTTTAGTCGAAA 480
consensus_4070#1      TGTTCTTCATATATTTCCATCTGTTTTGAAACGGAGAGTTTTCGTGAACTTTAGTCGAAA 134
                      ************************************************************

consensus_4070#0      CCGAGACTTACGACTCTAACTTAGTCAAAAATTCTGAAAAAATTTACATATACTGGCATA 540
consensus_4070#1      CCGAGACTTACGACTCTAACTTAGTCAAAAATTCTGAAAAAATTTACATATACTGGCATA 194
                      ************************************************************

consensus_4070#0      TAGAAATTTGTGTGTCTTTACTTACTGCATGACTAGTTTATGAAAATGATGTTGGCTACA 600
consensus_4070#1      TAGAAATTTGTGTGTCTTTACTTACTGCATGACTAGTTTATGAAAATGATGTTGGCTACA 254
                      ************************************************************

consensus_4070#0      GGTTACCTGTTGAGAATGCGATCTTTTCTGGATTGTTTTTATCAATCATCAAACATAAAA 660
consensus_4070#1      GGTTACCTGTTGAGAATGCGATCTTTTCTGGATTGTTTTTATCAATCATCAAACATAAAA 314
                      ************************************************************

consensus_4070#0      TAATGTGTTATGTTTCGTATTTCATCCTCGTGGAGTTTAGAAATA-TATAGACTTACCGA 719
consensus_4070#1      TAATGTGTTATGTTTCGTATTTCATCCTCGTGGAGTTTAGAAATAATATAGACTTACCGA 374
                      ********************************************* **************

consensus_4070#0      ATTCAGTATTGCTTGAAATGAAGAAACTACCCTTTAGCTCA-GTGANTTAATC-TACTTG 777
consensus_4070#1      ATTCAGTATTGCTTGAAATGAAGAACTTACCCTTAGCTTCAAGTGATTTAATCCTACTTG 434
                      *************************  *******    *** **** ****** ******

consensus_4070#0      ATAGTTTT-CTCTACAAAAT--GATGAT-TATAT-TATAT-TATGAGCACGT-ATATT-G 829
consensus_4070#1      ATAGTTTTTCTCTACAAAAATGGATGATATATATATATATATATGAGCACGTTATATTTG 494
                      ******** **********   ****** ***** ***** *********** ***** *

consensus_4070#0      CTTCTTTA--CACGTTT--AGATAT--GACTTTGNNATGAGATCTCGTCGGTCTGTA-CT 882
consensus_4070#1      CTTCTTTTACCACGTTTTAGAATATTGAACTTTTGGAATGGAGATCTTCGTTTCGTGTCT 554
                      *******   *******    ****   *****   *   **  ** *** *  **  **

consensus_4070#0      GTTCTCTGATTACTATATCATAGCGAAAATCGNCATTCATGACTTTATTTATATGGAG-- 940
consensus_4070#1      GTTCACTGTTT--TTCTTCTGGATTTAACTAATCATTCATTAGTCTGTAAATATCTGTAC 612
                      **** *** **  *   **       ** *   ******* * * * *  ****      

consensus_4070#0      --------------------------------------------
consensus_4070#1      ATATACATTGGACTTTTTATTTTTTAATAAAGGGATGGTGCTTA 656