These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_4070#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 940 fasta sequence [CACCGAGGCCAANAATTCGGCACGAGGTCGAATGACTCGTCGAACACTTTCAAAAGGCGAACTGAACGTCTAAGTGATGATGAAGATGATTAAGAAAAACGTGAGTTAACTGATTTATAGAGTTTGTGGTCTTAATAAGTGCAACAATTTGTTTGTGTCTTGATTATTTTCTTTTCATGAACTTGGTATGAAATATGTTATTCGACTGATAAATTATTCACCCATGAACCTAAATTTTGTGTATAATTTCAGGGGTGTATTCAATTTATTCATTCTCTTGTCCGTAGTAAATGTCCTCATATTATGTTCGTCATAATTCACTTGTTTACTTGTCGCTTTTTCAGATAATTAATAGATCCGACTCACGATAATTCAGTAAAGTAAGACTTAAGTCTTTCTTCTCAAACAAAAAAACTGTCATGTTCTTCATATATTTCCATCTGTTTTGAAACGGAGAGTTTTCGTGAACTTTAGTCGAAACCGAGACTTACGACTCTAACTTAGTCAAAAATTCTGAAAAAATTTACATATACTGGCATATAGAAATTTGTGTGTCTTTACTTACTGCATGACTAGTTTATGAAAATGATGTTGGCTACAGGTTACCTGTTGAGAATGCGATCTTTTCTGGATTGTTTTTATCAATCATCAAACATAAAATAATGTGTTATGTTTCGTATTTCATCCTCGTGGAGTTTAGAAATATATAGACTTACCGAATTCAGTATTGCTTGAAATGAAGAAACTACCCTTTAGCTCAGTGANTTAATCTACTTGATAGTTTTCTCTACAAAATGATGATTATATTATATTATGAGCACGTATATTGCTTCTTTACACGTTTAGATATGACTTTGNNATGAGATCTCGTCGGTCTGTACTGTTCTCTGATTACTATATCATAGCGAAAATCGNCATTCATGACTTTATTTATATGGAG] [+] EMBL CD079701 [CACCGAGGCCAANAATTCGGCACGAGGTCGAATGACTCGTCGAACACTTTCAAAAGGCGAACTGAACGTCTAAGTGATGATGAAGATGATTAAGAAAAACGTGAGTTAACTGATTTATAGAGTTTGTGGTCTTAATAAGTGCAACAATTTGTTTGTGTCTTGATTATTTTCTTTTCATGAACTTGGTATGAAATATGTTATTCGACTGATAAATTATTCACCCATGAACCTAAATTTTGTGTATAATTTCAGGGGTGTATTCAATTTATTCATTCTCTTGTCCGTAGTAAATGTCCTCATATTATGTTCGTCATAATTCACTTGTTTACTTGTCGCTTTTTCAGATAATTAATAGATCCGACTCACGATAATTCAGTAAAGTAAGACTTAAGTCTTTCTTCTCAAACAAAAAAACTGTCATGTTCTTCATATATTTCCATCTGTTTTGAAACGGAGAGTTTTCGTGAACTTTAGTCGAAACCGAGACTTACGACTCTAACTTAGTCAAAAATTCTGAAAAAATTTACATATACTGGCATATAGAAATTTGTGTGTCTTTACTTACTGCATGACTAGTTTATGAAAATGATGTTGGCTACAGGTTACCTGTTGAGAATGCGATCTTTTCTGGATTGTTTTTATCAATCATCAAACATAAAATAATGTGTTATGTTTCGTATTTCATCCTCGTGGAGTTTAGAAATATATAGACTTACCGAATTCAGTATTGCTTGAAATGAAGAAACTACCCTTTAGCTCAGTGANTTAATCTACTTGATAGTTTTCTCTACAAAATGATGATTATATTATATTATGAGCACGTATATTGCTTCTTTACACGTTTAGATATGACTTTGNNATGAGATCTCGTCGGTCTGTACTGTTCTCTGATTACTATATCATAGCGAAAATCGNCATTCATGACTTTATTTATATGGAG] consensusID : consensus_4070#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 656 fasta sequence [AATTAATAGATCCGACTCACGATAATTCAGTAAAGTAAGACTTAAGTCTTTCTTCTCAAACAAAAAAACTGTCATGTTCTTCATATATTTCCATCTGTTTTGAAACGGAGAGTTTTCGTGAACTTTAGTCGAAACCGAGACTTACGACTCTAACTTAGTCAAAAATTCTGAAAAAATTTACATATACTGGCATATAGAAATTTGTGTGTCTTTACTTACTGCATGACTAGTTTATGAAAATGATGTTGGCTACAGGTTACCTGTTGAGAATGCGATCTTTTCTGGATTGTTTTTATCAATCATCAAACATAAAATAATGTGTTATGTTTCGTATTTCATCCTCGTGGAGTTTAGAAATAATATAGACTTACCGAATTCAGTATTGCTTGAAATGAAGAACTTACCCTTAGCTTCAAGTGATTTAATCCTACTTGATAGTTTTTCTCTACAAAAATGGATGATATATATATATATATATGAGCACGTTATATTTGCTTCTTTTACCACGTTTTAGAATATTGAACTTTTGGAATGGAGATCTTCGTTTCGTGTCTGTTCACTGTTTTTCTTCTGGATTTAACTAATCATTCATTAGTCTGTAAATATCTGTACATATACATTGGACTTTTTATTTTTTAATAAAGGGATGGTGCTTA] [-] EMBL CD073960 [AATTAATAGATCCGACTCACGATAATTCAGTAAAGTAAGACTTAAGTCTTTCTTCTCAAACAAAAAAACTGTCATGTTCTTCATATATTTCCATCTGTTTTGAAACGGAGAGTTTTCGTGAACTTTAGTCGAAACCGAGACTTACGACTCTAACTTAGTCAAAAATTCTGAAAAAATTTACATATACTGGCATATAGAAATTTGTGTGTCTTTACTTACTGCATGACTAGTTTATGAAAATGATGTTGGCTACAGGTTACCTGTTGAGAATGCGATCTTTTCTGGATTGTTTTTATCAATCATCAAACATAAAATAATGTGTTATGTTTCGTATTTCATCCTCGTGGAGTTTAGAAATAATATAGACTTACCGAATTCAGTATTGCTTGAAATGAAGAACTTACCCTTAGCTTCAAGTGATTTAATCCTACTTGATAGTTTTTCTCTACAAAAATGGATGATATATATATATATATATGAGCACGTTATATTTGCTTCTTTTACCACGTTTTAGAATATTGAACTTTTGGAATGGAGATCTTCGTTTCGTGTCTGTTCACTGTTTTTCTTCTGGATTTAACTAATCATTCATTAGTCTGTAAATATCTGTACATATACATTGGACTTTTTATTTTTTAATAAAGGGATGGTGCTTA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_4070#0 CACCGAGGCCAANAATTCGGCACGAGGTCGAATGACTCGTCGAACACTTTCAAAAGGCGA 60 consensus_4070#1 ------------------------------------------------------------ consensus_4070#0 ACTGAACGTCTAAGTGATGATGAAGATGATTAAGAAAAACGTGAGTTAACTGATTTATAG 120 consensus_4070#1 ------------------------------------------------------------ consensus_4070#0 AGTTTGTGGTCTTAATAAGTGCAACAATTTGTTTGTGTCTTGATTATTTTCTTTTCATGA 180 consensus_4070#1 ------------------------------------------------------------ consensus_4070#0 ACTTGGTATGAAATATGTTATTCGACTGATAAATTATTCACCCATGAACCTAAATTTTGT 240 consensus_4070#1 ------------------------------------------------------------ consensus_4070#0 GTATAATTTCAGGGGTGTATTCAATTTATTCATTCTCTTGTCCGTAGTAAATGTCCTCAT 300 consensus_4070#1 ------------------------------------------------------------ consensus_4070#0 ATTATGTTCGTCATAATTCACTTGTTTACTTGTCGCTTTTTCAGATAATTAATAGATCCG 360 consensus_4070#1 ----------------------------------------------AATTAATAGATCCG 14 ************** consensus_4070#0 ACTCACGATAATTCAGTAAAGTAAGACTTAAGTCTTTCTTCTCAAACAAAAAAACTGTCA 420 consensus_4070#1 ACTCACGATAATTCAGTAAAGTAAGACTTAAGTCTTTCTTCTCAAACAAAAAAACTGTCA 74 ************************************************************ consensus_4070#0 TGTTCTTCATATATTTCCATCTGTTTTGAAACGGAGAGTTTTCGTGAACTTTAGTCGAAA 480 consensus_4070#1 TGTTCTTCATATATTTCCATCTGTTTTGAAACGGAGAGTTTTCGTGAACTTTAGTCGAAA 134 ************************************************************ consensus_4070#0 CCGAGACTTACGACTCTAACTTAGTCAAAAATTCTGAAAAAATTTACATATACTGGCATA 540 consensus_4070#1 CCGAGACTTACGACTCTAACTTAGTCAAAAATTCTGAAAAAATTTACATATACTGGCATA 194 ************************************************************ consensus_4070#0 TAGAAATTTGTGTGTCTTTACTTACTGCATGACTAGTTTATGAAAATGATGTTGGCTACA 600 consensus_4070#1 TAGAAATTTGTGTGTCTTTACTTACTGCATGACTAGTTTATGAAAATGATGTTGGCTACA 254 ************************************************************ consensus_4070#0 GGTTACCTGTTGAGAATGCGATCTTTTCTGGATTGTTTTTATCAATCATCAAACATAAAA 660 consensus_4070#1 GGTTACCTGTTGAGAATGCGATCTTTTCTGGATTGTTTTTATCAATCATCAAACATAAAA 314 ************************************************************ consensus_4070#0 TAATGTGTTATGTTTCGTATTTCATCCTCGTGGAGTTTAGAAATA-TATAGACTTACCGA 719 consensus_4070#1 TAATGTGTTATGTTTCGTATTTCATCCTCGTGGAGTTTAGAAATAATATAGACTTACCGA 374 ********************************************* ************** consensus_4070#0 ATTCAGTATTGCTTGAAATGAAGAAACTACCCTTTAGCTCA-GTGANTTAATC-TACTTG 777 consensus_4070#1 ATTCAGTATTGCTTGAAATGAAGAACTTACCCTTAGCTTCAAGTGATTTAATCCTACTTG 434 ************************* ******* *** **** ****** ****** consensus_4070#0 ATAGTTTT-CTCTACAAAAT--GATGAT-TATAT-TATAT-TATGAGCACGT-ATATT-G 829 consensus_4070#1 ATAGTTTTTCTCTACAAAAATGGATGATATATATATATATATATGAGCACGTTATATTTG 494 ******** ********** ****** ***** ***** *********** ***** * consensus_4070#0 CTTCTTTA--CACGTTT--AGATAT--GACTTTGNNATGAGATCTCGTCGGTCTGTA-CT 882 consensus_4070#1 CTTCTTTTACCACGTTTTAGAATATTGAACTTTTGGAATGGAGATCTTCGTTTCGTGTCT 554 ******* ******* **** ***** * ** ** *** * ** ** consensus_4070#0 GTTCTCTGATTACTATATCATAGCGAAAATCGNCATTCATGACTTTATTTATATGGAG-- 940 consensus_4070#1 GTTCACTGTTT--TTCTTCTGGATTTAACTAATCATTCATTAGTCTGTAAATATCTGTAC 612 **** *** ** * ** ** * ******* * * * * **** consensus_4070#0 -------------------------------------------- consensus_4070#1 ATATACATTGGACTTTTTATTTTTTAATAAAGGGATGGTGCTTA 656 |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||