cluster # 4074

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Schistosoma mansoni
cluster # 4074 cluster # 4074 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_4074#0 length = 925 sequences # 1

consensus_4074#1 length = 669 sequences # 1

consensusID : consensus_4074#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 925
fasta sequence

                              [CCCTACGGGCCAANAATTCGGCACGAGGAAGTTTGTTAATTGAAGCTCGTTCGAAATTTTATTCCACTGACCTCAAACTTCAGTTTACAGATTGTCTTAGGTTTATGCTCGTTTTATCCCCATCTGTTGTCAGTTGCTTCGATCAATAAATATTTCCTTATACAGTCCACCAAAACATAACTGACTTCCAAGCTAAACGTGGACCGTGATACATTTGCATCTCATAAGAGGACTAATTCCTCTTGCAATATTACAACAGGAGTACTCTAACCATCTTATCGAACTTCATAGTACACAATCCAGATGGCAGAATTGCATTGTTTTGGACAAATTTTGTGTGCTTATGGGTTCCCCCAGAAAGATTTATTCTGCAAATGGGGTCTTAAAGCTGGTTGTGCATGGAGGTTACTTGAAGGTTTAGCTGAAGGTGAGACACAAGTTGACTGCCCACTGGTTGGCGAAAAAGCATACTTTTGCCATCCAATCGATCTACATTTCGCTACAAAAGGTTTACAAGGTTGGCCCAAGCTTCATTTTCAGGTTTGGCATCATGATTGGGTTGGTAAAAACGAGCTTTATGGGTACGGTTTCTGTCACATCCCAACATCTCCTGGAAATCATGAGGTAATAGTTCCTACATGGAGACCGGTAGGTTCCATTTTGGACACTTTAGTATCAAGGCTGGTTGGAGGTGGTCCACGTCTTCGCAGACCAGACATTGTCTACGATCCAACTGATAGATTCTTGCTACAGACAGAGAGTATGGGTTACATAACACTANGATTGAATGTCGTACGAGAAAATTTGATAGTTGGTGTAGAATGTAATCATTGTTATGTTTTTGAAAGTTCAAACANAATGTACTACTCATACGACTTGACGNNATTCTTTGGATTCATCGNAATTTGGNAATATNTCTGGACAG]

[+] EMBL CD079711             [CCCTACGGGCCAANAATTCGGCACGAGGAAGTTTGTTAATTGAAGCTCGTTCGAAATTTTATTCCACTGACCTCAAACTTCAGTTTACAGATTGTCTTAGGTTTATGCTCGTTTTATCCCCATCTGTTGTCAGTTGCTTCGATCAATAAATATTTCCTTATACAGTCCACCAAAACATAACTGACTTCCAAGCTAAACGTGGACCGTGATACATTTGCATCTCATAAGAGGACTAATTCCTCTTGCAATATTACAACAGGAGTACTCTAACCATCTTATCGAACTTCATAGTACACAATCCAGATGGCAGAATTGCATTGTTTTGGACAAATTTTGTGTGCTTATGGGTTCCCCCAGAAAGATTTATTCTGCAAATGGGGTCTTAAAGCTGGTTGTGCATGGAGGTTACTTGAAGGTTTAGCTGAAGGTGAGACACAAGTTGACTGCCCACTGGTTGGCGAAAAAGCATACTTTTGCCATCCAATCGATCTACATTTCGCTACAAAAGGTTTACAAGGTTGGCCCAAGCTTCATTTTCAGGTTTGGCATCATGATTGGGTTGGTAAAAACGAGCTTTATGGGTACGGTTTCTGTCACATCCCAACATCTCCTGGAAATCATGAGGTAATAGTTCCTACATGGAGACCGGTAGGTTCCATTTTGGACACTTTAGTATCAAGGCTGGTTGGAGGTGGTCCACGTCTTCGCAGACCAGACATTGTCTACGATCCAACTGATAGATTCTTGCTACAGACAGAGAGTATGGGTTACATAACACTANGATTGAATGTCGTACGAGAAAATTTGATAGTTGGTGTAGAATGTAATCATTGTTATGTTTTTGAAAGTTCAAACANAATGTACTACTCATACGACTTGACGNNATTCTTTGGATTCATCGNAATTTGGNAATATNTCTGGACAG]




>consensus_4074#0
CCCTACGGGCCAANAATTCGGCACGAGGAAGTTTGTTAATTGAAGCTCGTTCGAAATTTT
ATTCCACTGACCTCAAACTTCAGTTTACAGATTGTCTTAGGTTTATGCTCGTTTTATCCC
CATCTGTTGTCAGTTGCTTCGATCAATAAATATTTCCTTATACAGTCCACCAAAACATAA
CTGACTTCCAAGCTAAACGTGGACCGTGATACATTTGCATCTCATAAGAGGACTAATTCC
TCTTGCAATATTACAACAGGAGTACTCTAACCATCTTATCGAACTTCATAGTACACAATC
CAGATGGCAGAATTGCATTGTTTTGGACAAATTTTGTGTGCTTATGGGTTCCCCCAGAAA
GATTTATTCTGCAAATGGGGTCTTAAAGCTGGTTGTGCATGGAGGTTACTTGAAGGTTTA
GCTGAAGGTGAGACACAAGTTGACTGCCCACTGGTTGGCGAAAAAGCATACTTTTGCCAT
CCAATCGATCTACATTTCGCTACAAAAGGTTTACAAGGTTGGCCCAAGCTTCATTTTCAG
GTTTGGCATCATGATTGGGTTGGTAAAAACGAGCTTTATGGGTACGGTTTCTGTCACATC
CCAACATCTCCTGGAAATCATGAGGTAATAGTTCCTACATGGAGACCGGTAGGTTCCATT
TTGGACACTTTAGTATCAAGGCTGGTTGGAGGTGGTCCACGTCTTCGCAGACCAGACATT
GTCTACGATCCAACTGATAGATTCTTGCTACAGACAGAGAGTATGGGTTACATAACACTA
NGATTGAATGTCGTACGAGAAAATTTGATAGTTGGTGTAGAATGTAATCATTGTTATGTT
TTTGAAAGTTCAAACANAATGTACTACTCATACGACTTGACGNNATTCTTTGGATTCATC
GNAATTTGGNAATATNTCTGGACAG

consensusID : consensus_4074#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 669
fasta sequence

                              [TCATAGTACACAATCCAGATGGCAGAATTGCATTGTTTTGGACAAATTTTGTGTGCTTATGGGTTCCCCCAGAAAGATTTATTCTGCAAATGGGGTCTTAAAGCTGGTTGTGCATGGAGGTTACTTGAAGGTTTAGCTGAAGGTGAGACACAAGTTGACTGCCCACTGGTTGGCGAAAAAGCATACTTTTGCCATCCAATCGATCTACATTTCGCTACAAAAGGTTTACAAGGTTGGCCCAAGCTTCATTTTCAGGTTTGGCATCATGATTGGGTTGGTAAAAACGAGCTTTATGGGTACGGTTTCTGTCACATCCCAACATCTCCTGGAAATCATGAGGTAATAGTTCCTACATGGAGACCGGTAGGTTCCATTTTGGACACTTTAGTATCAAGGCTGGTTGGAGGTGGTCCACGTCTTCGCAGACCAGACATTGTCTACGATCCAACTGATAGATTCTTGCTACAGACAGAGAGTATGGGTTACATAACACTAGATTTGAATGTCGTAACGAGAAATTTTGATAAGTTTGGTGTAGAAATGTAAATCATTGTTTATGTTTTTGAAAGTTTTCAAAACAAAATGTTACCTACATCATACCGACTTGACCGTATTTCTTTTGGTATTTCATCGAATTTTTGTGTAAATAATACTCTGGAACAAGGAATA]

[-] EMBL CD073969             [TCATAGTACACAATCCAGATGGCAGAATTGCATTGTTTTGGACAAATTTTGTGTGCTTATGGGTTCCCCCAGAAAGATTTATTCTGCAAATGGGGTCTTAAAGCTGGTTGTGCATGGAGGTTACTTGAAGGTTTAGCTGAAGGTGAGACACAAGTTGACTGCCCACTGGTTGGCGAAAAAGCATACTTTTGCCATCCAATCGATCTACATTTCGCTACAAAAGGTTTACAAGGTTGGCCCAAGCTTCATTTTCAGGTTTGGCATCATGATTGGGTTGGTAAAAACGAGCTTTATGGGTACGGTTTCTGTCACATCCCAACATCTCCTGGAAATCATGAGGTAATAGTTCCTACATGGAGACCGGTAGGTTCCATTTTGGACACTTTAGTATCAAGGCTGGTTGGAGGTGGTCCACGTCTTCGCAGACCAGACATTGTCTACGATCCAACTGATAGATTCTTGCTACAGACAGAGAGTATGGGTTACATAACACTAGATTTGAATGTCGTAACGAGAAATTTTGATAAGTTTGGTGTAGAAATGTAAATCATTGTTTATGTTTTTGAAAGTTTTCAAAACAAAATGTTACCTACATCATACCGACTTGACCGTATTTCTTTTGGTATTTCATCGAATTTTTGTGTAAATAATACTCTGGAACAAGGAATA]




>consensus_4074#1
TCATAGTACACAATCCAGATGGCAGAATTGCATTGTTTTGGACAAATTTTGTGTGCTTAT
GGGTTCCCCCAGAAAGATTTATTCTGCAAATGGGGTCTTAAAGCTGGTTGTGCATGGAGG
TTACTTGAAGGTTTAGCTGAAGGTGAGACACAAGTTGACTGCCCACTGGTTGGCGAAAAA
GCATACTTTTGCCATCCAATCGATCTACATTTCGCTACAAAAGGTTTACAAGGTTGGCCC
AAGCTTCATTTTCAGGTTTGGCATCATGATTGGGTTGGTAAAAACGAGCTTTATGGGTAC
GGTTTCTGTCACATCCCAACATCTCCTGGAAATCATGAGGTAATAGTTCCTACATGGAGA
CCGGTAGGTTCCATTTTGGACACTTTAGTATCAAGGCTGGTTGGAGGTGGTCCACGTCTT
CGCAGACCAGACATTGTCTACGATCCAACTGATAGATTCTTGCTACAGACAGAGAGTATG
GGTTACATAACACTAGATTTGAATGTCGTAACGAGAAATTTTGATAAGTTTGGTGTAGAA
ATGTAAATCATTGTTTATGTTTTTGAAAGTTTTCAAAACAAAATGTTACCTACATCATAC
CGACTTGACCGTATTTCTTTTGGTATTTCATCGAATTTTTGTGTAAATAATACTCTGGAA
CAAGGAATA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_4074#0      CCCTACGGGCCAANAATTCGGCACGAGGAAGTTTGTTAATTGAAGCTCGTTCGAAATTTT 60
consensus_4074#1      ------------------------------------------------------------
                                                                                  

consensus_4074#0      ATTCCACTGACCTCAAACTTCAGTTTACAGATTGTCTTAGGTTTATGCTCGTTTTATCCC 120
consensus_4074#1      ------------------------------------------------------------
                                                                                  

consensus_4074#0      CATCTGTTGTCAGTTGCTTCGATCAATAAATATTTCCTTATACAGTCCACCAAAACATAA 180
consensus_4074#1      ------------------------------------------------------------
                                                                                  

consensus_4074#0      CTGACTTCCAAGCTAAACGTGGACCGTGATACATTTGCATCTCATAAGAGGACTAATTCC 240
consensus_4074#1      ------------------------------------------------------------
                                                                                  

consensus_4074#0      TCTTGCAATATTACAACAGGAGTACTCTAACCATCTTATCGAACTTCATAGTACACAATC 300
consensus_4074#1      ---------------------------------------------TCATAGTACACAATC 15
                                                                   ***************

consensus_4074#0      CAGATGGCAGAATTGCATTGTTTTGGACAAATTTTGTGTGCTTATGGGTTCCCCCAGAAA 360
consensus_4074#1      CAGATGGCAGAATTGCATTGTTTTGGACAAATTTTGTGTGCTTATGGGTTCCCCCAGAAA 75
                      ************************************************************

consensus_4074#0      GATTTATTCTGCAAATGGGGTCTTAAAGCTGGTTGTGCATGGAGGTTACTTGAAGGTTTA 420
consensus_4074#1      GATTTATTCTGCAAATGGGGTCTTAAAGCTGGTTGTGCATGGAGGTTACTTGAAGGTTTA 135
                      ************************************************************

consensus_4074#0      GCTGAAGGTGAGACACAAGTTGACTGCCCACTGGTTGGCGAAAAAGCATACTTTTGCCAT 480
consensus_4074#1      GCTGAAGGTGAGACACAAGTTGACTGCCCACTGGTTGGCGAAAAAGCATACTTTTGCCAT 195
                      ************************************************************

consensus_4074#0      CCAATCGATCTACATTTCGCTACAAAAGGTTTACAAGGTTGGCCCAAGCTTCATTTTCAG 540
consensus_4074#1      CCAATCGATCTACATTTCGCTACAAAAGGTTTACAAGGTTGGCCCAAGCTTCATTTTCAG 255
                      ************************************************************

consensus_4074#0      GTTTGGCATCATGATTGGGTTGGTAAAAACGAGCTTTATGGGTACGGTTTCTGTCACATC 600
consensus_4074#1      GTTTGGCATCATGATTGGGTTGGTAAAAACGAGCTTTATGGGTACGGTTTCTGTCACATC 315
                      ************************************************************

consensus_4074#0      CCAACATCTCCTGGAAATCATGAGGTAATAGTTCCTACATGGAGACCGGTAGGTTCCATT 660
consensus_4074#1      CCAACATCTCCTGGAAATCATGAGGTAATAGTTCCTACATGGAGACCGGTAGGTTCCATT 375
                      ************************************************************

consensus_4074#0      TTGGACACTTTAGTATCAAGGCTGGTTGGAGGTGGTCCACGTCTTCGCAGACCAGACATT 720
consensus_4074#1      TTGGACACTTTAGTATCAAGGCTGGTTGGAGGTGGTCCACGTCTTCGCAGACCAGACATT 435
                      ************************************************************

consensus_4074#0      GTCTACGATCCAACTGATAGATTCTTGCTACAGACAGAGAGTATGGGTTACATAACACTA 780
consensus_4074#1      GTCTACGATCCAACTGATAGATTCTTGCTACAGACAGAGAGTATGGGTTACATAACACTA 495
                      ************************************************************

consensus_4074#0      NGATTGAATGTCGTA-CGAGAAAATTTGATAG--TTGGTGTAGAA-TGTAA-TCATTGTT 835
consensus_4074#1      GATTTGAATGTCGTAACGAGAAATTTTGATAAGTTTGGTGTAGAAATGTAAATCATTGTT 555
                         ************ ******* *******   *********** ***** ********

consensus_4074#0      -ATGTTTTTGAAAGTTC---AAACANAATGTA--CTAC-TCATAC-GACTTGACGNNATT 887
consensus_4074#1      TATGTTTTTGAAAGTTTTCAAAACAAAATGTTACCTACATCATACCGACTTGACCGTATT 615
                       ***************    ***** *****   **** ****** ********   ***

consensus_4074#0      C--TTTGGA--TTCATCGNAATTTGGN------AATATNTCTGGACAG------ 925
consensus_4074#1      TCTTTTGGTATTTCATCGAATTTTTGTGTAAATAATACTCTGGAACAAGGAATA 669
                         *****   ******* * *** *       ****     * ***