These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_4074#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 925 fasta sequence [CCCTACGGGCCAANAATTCGGCACGAGGAAGTTTGTTAATTGAAGCTCGTTCGAAATTTTATTCCACTGACCTCAAACTTCAGTTTACAGATTGTCTTAGGTTTATGCTCGTTTTATCCCCATCTGTTGTCAGTTGCTTCGATCAATAAATATTTCCTTATACAGTCCACCAAAACATAACTGACTTCCAAGCTAAACGTGGACCGTGATACATTTGCATCTCATAAGAGGACTAATTCCTCTTGCAATATTACAACAGGAGTACTCTAACCATCTTATCGAACTTCATAGTACACAATCCAGATGGCAGAATTGCATTGTTTTGGACAAATTTTGTGTGCTTATGGGTTCCCCCAGAAAGATTTATTCTGCAAATGGGGTCTTAAAGCTGGTTGTGCATGGAGGTTACTTGAAGGTTTAGCTGAAGGTGAGACACAAGTTGACTGCCCACTGGTTGGCGAAAAAGCATACTTTTGCCATCCAATCGATCTACATTTCGCTACAAAAGGTTTACAAGGTTGGCCCAAGCTTCATTTTCAGGTTTGGCATCATGATTGGGTTGGTAAAAACGAGCTTTATGGGTACGGTTTCTGTCACATCCCAACATCTCCTGGAAATCATGAGGTAATAGTTCCTACATGGAGACCGGTAGGTTCCATTTTGGACACTTTAGTATCAAGGCTGGTTGGAGGTGGTCCACGTCTTCGCAGACCAGACATTGTCTACGATCCAACTGATAGATTCTTGCTACAGACAGAGAGTATGGGTTACATAACACTANGATTGAATGTCGTACGAGAAAATTTGATAGTTGGTGTAGAATGTAATCATTGTTATGTTTTTGAAAGTTCAAACANAATGTACTACTCATACGACTTGACGNNATTCTTTGGATTCATCGNAATTTGGNAATATNTCTGGACAG] [+] EMBL CD079711 [CCCTACGGGCCAANAATTCGGCACGAGGAAGTTTGTTAATTGAAGCTCGTTCGAAATTTTATTCCACTGACCTCAAACTTCAGTTTACAGATTGTCTTAGGTTTATGCTCGTTTTATCCCCATCTGTTGTCAGTTGCTTCGATCAATAAATATTTCCTTATACAGTCCACCAAAACATAACTGACTTCCAAGCTAAACGTGGACCGTGATACATTTGCATCTCATAAGAGGACTAATTCCTCTTGCAATATTACAACAGGAGTACTCTAACCATCTTATCGAACTTCATAGTACACAATCCAGATGGCAGAATTGCATTGTTTTGGACAAATTTTGTGTGCTTATGGGTTCCCCCAGAAAGATTTATTCTGCAAATGGGGTCTTAAAGCTGGTTGTGCATGGAGGTTACTTGAAGGTTTAGCTGAAGGTGAGACACAAGTTGACTGCCCACTGGTTGGCGAAAAAGCATACTTTTGCCATCCAATCGATCTACATTTCGCTACAAAAGGTTTACAAGGTTGGCCCAAGCTTCATTTTCAGGTTTGGCATCATGATTGGGTTGGTAAAAACGAGCTTTATGGGTACGGTTTCTGTCACATCCCAACATCTCCTGGAAATCATGAGGTAATAGTTCCTACATGGAGACCGGTAGGTTCCATTTTGGACACTTTAGTATCAAGGCTGGTTGGAGGTGGTCCACGTCTTCGCAGACCAGACATTGTCTACGATCCAACTGATAGATTCTTGCTACAGACAGAGAGTATGGGTTACATAACACTANGATTGAATGTCGTACGAGAAAATTTGATAGTTGGTGTAGAATGTAATCATTGTTATGTTTTTGAAAGTTCAAACANAATGTACTACTCATACGACTTGACGNNATTCTTTGGATTCATCGNAATTTGGNAATATNTCTGGACAG] consensusID : consensus_4074#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 669 fasta sequence [TCATAGTACACAATCCAGATGGCAGAATTGCATTGTTTTGGACAAATTTTGTGTGCTTATGGGTTCCCCCAGAAAGATTTATTCTGCAAATGGGGTCTTAAAGCTGGTTGTGCATGGAGGTTACTTGAAGGTTTAGCTGAAGGTGAGACACAAGTTGACTGCCCACTGGTTGGCGAAAAAGCATACTTTTGCCATCCAATCGATCTACATTTCGCTACAAAAGGTTTACAAGGTTGGCCCAAGCTTCATTTTCAGGTTTGGCATCATGATTGGGTTGGTAAAAACGAGCTTTATGGGTACGGTTTCTGTCACATCCCAACATCTCCTGGAAATCATGAGGTAATAGTTCCTACATGGAGACCGGTAGGTTCCATTTTGGACACTTTAGTATCAAGGCTGGTTGGAGGTGGTCCACGTCTTCGCAGACCAGACATTGTCTACGATCCAACTGATAGATTCTTGCTACAGACAGAGAGTATGGGTTACATAACACTAGATTTGAATGTCGTAACGAGAAATTTTGATAAGTTTGGTGTAGAAATGTAAATCATTGTTTATGTTTTTGAAAGTTTTCAAAACAAAATGTTACCTACATCATACCGACTTGACCGTATTTCTTTTGGTATTTCATCGAATTTTTGTGTAAATAATACTCTGGAACAAGGAATA] [-] EMBL CD073969 [TCATAGTACACAATCCAGATGGCAGAATTGCATTGTTTTGGACAAATTTTGTGTGCTTATGGGTTCCCCCAGAAAGATTTATTCTGCAAATGGGGTCTTAAAGCTGGTTGTGCATGGAGGTTACTTGAAGGTTTAGCTGAAGGTGAGACACAAGTTGACTGCCCACTGGTTGGCGAAAAAGCATACTTTTGCCATCCAATCGATCTACATTTCGCTACAAAAGGTTTACAAGGTTGGCCCAAGCTTCATTTTCAGGTTTGGCATCATGATTGGGTTGGTAAAAACGAGCTTTATGGGTACGGTTTCTGTCACATCCCAACATCTCCTGGAAATCATGAGGTAATAGTTCCTACATGGAGACCGGTAGGTTCCATTTTGGACACTTTAGTATCAAGGCTGGTTGGAGGTGGTCCACGTCTTCGCAGACCAGACATTGTCTACGATCCAACTGATAGATTCTTGCTACAGACAGAGAGTATGGGTTACATAACACTAGATTTGAATGTCGTAACGAGAAATTTTGATAAGTTTGGTGTAGAAATGTAAATCATTGTTTATGTTTTTGAAAGTTTTCAAAACAAAATGTTACCTACATCATACCGACTTGACCGTATTTCTTTTGGTATTTCATCGAATTTTTGTGTAAATAATACTCTGGAACAAGGAATA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_4074#0 CCCTACGGGCCAANAATTCGGCACGAGGAAGTTTGTTAATTGAAGCTCGTTCGAAATTTT 60 consensus_4074#1 ------------------------------------------------------------ consensus_4074#0 ATTCCACTGACCTCAAACTTCAGTTTACAGATTGTCTTAGGTTTATGCTCGTTTTATCCC 120 consensus_4074#1 ------------------------------------------------------------ consensus_4074#0 CATCTGTTGTCAGTTGCTTCGATCAATAAATATTTCCTTATACAGTCCACCAAAACATAA 180 consensus_4074#1 ------------------------------------------------------------ consensus_4074#0 CTGACTTCCAAGCTAAACGTGGACCGTGATACATTTGCATCTCATAAGAGGACTAATTCC 240 consensus_4074#1 ------------------------------------------------------------ consensus_4074#0 TCTTGCAATATTACAACAGGAGTACTCTAACCATCTTATCGAACTTCATAGTACACAATC 300 consensus_4074#1 ---------------------------------------------TCATAGTACACAATC 15 *************** consensus_4074#0 CAGATGGCAGAATTGCATTGTTTTGGACAAATTTTGTGTGCTTATGGGTTCCCCCAGAAA 360 consensus_4074#1 CAGATGGCAGAATTGCATTGTTTTGGACAAATTTTGTGTGCTTATGGGTTCCCCCAGAAA 75 ************************************************************ consensus_4074#0 GATTTATTCTGCAAATGGGGTCTTAAAGCTGGTTGTGCATGGAGGTTACTTGAAGGTTTA 420 consensus_4074#1 GATTTATTCTGCAAATGGGGTCTTAAAGCTGGTTGTGCATGGAGGTTACTTGAAGGTTTA 135 ************************************************************ consensus_4074#0 GCTGAAGGTGAGACACAAGTTGACTGCCCACTGGTTGGCGAAAAAGCATACTTTTGCCAT 480 consensus_4074#1 GCTGAAGGTGAGACACAAGTTGACTGCCCACTGGTTGGCGAAAAAGCATACTTTTGCCAT 195 ************************************************************ consensus_4074#0 CCAATCGATCTACATTTCGCTACAAAAGGTTTACAAGGTTGGCCCAAGCTTCATTTTCAG 540 consensus_4074#1 CCAATCGATCTACATTTCGCTACAAAAGGTTTACAAGGTTGGCCCAAGCTTCATTTTCAG 255 ************************************************************ consensus_4074#0 GTTTGGCATCATGATTGGGTTGGTAAAAACGAGCTTTATGGGTACGGTTTCTGTCACATC 600 consensus_4074#1 GTTTGGCATCATGATTGGGTTGGTAAAAACGAGCTTTATGGGTACGGTTTCTGTCACATC 315 ************************************************************ consensus_4074#0 CCAACATCTCCTGGAAATCATGAGGTAATAGTTCCTACATGGAGACCGGTAGGTTCCATT 660 consensus_4074#1 CCAACATCTCCTGGAAATCATGAGGTAATAGTTCCTACATGGAGACCGGTAGGTTCCATT 375 ************************************************************ consensus_4074#0 TTGGACACTTTAGTATCAAGGCTGGTTGGAGGTGGTCCACGTCTTCGCAGACCAGACATT 720 consensus_4074#1 TTGGACACTTTAGTATCAAGGCTGGTTGGAGGTGGTCCACGTCTTCGCAGACCAGACATT 435 ************************************************************ consensus_4074#0 GTCTACGATCCAACTGATAGATTCTTGCTACAGACAGAGAGTATGGGTTACATAACACTA 780 consensus_4074#1 GTCTACGATCCAACTGATAGATTCTTGCTACAGACAGAGAGTATGGGTTACATAACACTA 495 ************************************************************ consensus_4074#0 NGATTGAATGTCGTA-CGAGAAAATTTGATAG--TTGGTGTAGAA-TGTAA-TCATTGTT 835 consensus_4074#1 GATTTGAATGTCGTAACGAGAAATTTTGATAAGTTTGGTGTAGAAATGTAAATCATTGTT 555 ************ ******* ******* *********** ***** ******** consensus_4074#0 -ATGTTTTTGAAAGTTC---AAACANAATGTA--CTAC-TCATAC-GACTTGACGNNATT 887 consensus_4074#1 TATGTTTTTGAAAGTTTTCAAAACAAAATGTTACCTACATCATACCGACTTGACCGTATT 615 *************** ***** ***** **** ****** ******** *** consensus_4074#0 C--TTTGGA--TTCATCGNAATTTGGN------AATATNTCTGGACAG------ 925 consensus_4074#1 TCTTTTGGTATTTCATCGAATTTTTGTGTAAATAATACTCTGGAACAAGGAATA 669 ***** ******* * *** * **** * *** |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||