These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_4090#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 361 fasta sequence [CGAGGTGNAAGTTGGTTTTAATTTCCTGAATAATCCATTCTAGCATATCCATATAACTGACAATTATAATTTGGAGTCATTCTCCTATAGATTTCATATATATATTATCCCTTATCATTTATGAACTTACTTTCGATCTCTTNCATATCAAGTTTGNCTTTGTTGATTTCTTATTTNNAATTGGTAATTTTAAACAAAGATGAATATACATATATATGTATTGGGTGGATAAATGATATTGATGATNTCTTCNNATTTATGANTTANCCAACATTAAACTGACAGTTGGGTTACTGGATGCAATACANAATATNTGCAAGTAATGGNNTCCTTGGAAATNCANCNATTNGGGNTACCTCCT] [+] EMBL SM4141 [CGAGGTGNAAGTTGGTTTTAATTTCCTGAATAATCCATTCTAGCATATCCATATAACTGACAATTATAATTTGGAGTCATTCTCCTATAGATTTCATATATATATTATCCCTTATCATTTATGAACTTACTTTCGATCTCTTNCATATCAAGTTTGNCTTTGTTGATTTCTTATTTNNAATTGGTAATTTTAAACAAAGATGAATATACATATATATGTATTGGGTGGATAAATGATATTGATGATNTCTTCNNATTTATGANTTANCCAACATTAAACTGACAGTTGGGTTACTGGATGCAATACANAATATNTGCAAGTAATGGNNTCCTTGGAAATNCANCNATTNGGGNTACCTCCT] consensusID : consensus_4090#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 143 fasta sequence [TACTTTCGATCTCTTTCATATCAAGTTTGTCTTTGTTGATTTCTTATTTTTTATTTGGTAATTTTAAACAAAGATGAATATACATATATATGTATTGTGTGGATAAATGATATTGATGATTTCTTTTATTTATGAATTAATCA] [-] EMBL CD179993 [TACTTTCGATCTCTTTCATATCAAGTTTGTCTTTGTTGATTTCTTATTTTTTATTTGGTAATTTTAAACAAAGATGAATATACATATATATGTATTGTGTGGATAAATGATATTGATGATTTCTTTTATTTATGAATTAATCA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_4090#0 CGAGGTGNAAGTTGGTTTTAATTTCCTGAATAATCCATTCTAGCATATCCATATAACTGA 60 consensus_4090#1 ------------------------------------------------------------ consensus_4090#0 CAATTATAATTTGGAGTCATTCTCCTATAGATTTCATATATATATTATCCCTTATCATTT 120 consensus_4090#1 ------------------------------------------------------------ consensus_4090#0 ATGAACTTACTTTCGATCTCTTNCATATCAAGTTTGNCTTTGTTGATTTCTTATTTNNAA 180 consensus_4090#1 -------TACTTTCGATCTCTTTCATATCAAGTTTGTCTTTGTTGATTTCTTATTTTTTA 53 *************** ************* ******************* * consensus_4090#0 TT-GGTAATTTTAAACAAAGATGAATATACATATATATGTATTGGGTGGATAAATGATAT 239 consensus_4090#1 TTTGGTAATTTTAAACAAAGATGAATATACATATATATGTATTGTGTGGATAAATGATAT 113 ** ***************************************** *************** consensus_4090#0 TGATGATNTCTTCNNATTTATGANTTANCCAACATTAAACTGACAGTTGGGTTACTGGAT 299 consensus_4090#1 TGATGATTTCTT-TTATTTATGAATTAATCA----------------------------- 143 ******* **** ******** *** ** consensus_4090#0 GCAATACANAATATNTGCAAGTAATGGNNTCCTTGGAAATNCANCNATTNGGGNTACCTC 359 consensus_4090#1 ------------------------------------------------------------ consensus_4090#0 CT 361 consensus_4090#1 -- |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||