cluster # 4092

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Schistosoma mansoni
cluster # 4092 cluster # 4092 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_4092#0 length = 326 sequences # 1

consensus_4092#1 length = 307 sequences # 1

consensusID : consensus_4092#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 326
fasta sequence

                              [TGAACGATGAGAGTCCGATCTCATGAGCATGTTGGCGTAGGCGATATTGAAGACGGTGTCTCGGAGCCTACTGAAAACGTAAGTGGGAACCAACTTAAACTGGCGGGTCCAACTCAGCAATATTCGAAAAAATGCGCGAAAGTCGCGACGCCCCAGTAGAACTCAAATGGGTTGCGAAAGACTTGGCTGATGAGACAGATACAATCCAAAAACCTTCATGAATTAACAAGTGCTGAATAAGTCTAATGTTGTCAAGCCAGACAAAAGAATCAAGTTACGTCAGCTGCAATGGAGCGCTTAANGTTGAGAGGGTGCACGCTTAACAA]

[+] EMBL CD120137             [TGAACGATGAGAGTCCGATCTCATGAGCATGTTGGCGTAGGCGATATTGAAGACGGTGTCTCGGAGCCTACTGAAAACGTAAGTGGGAACCAACTTAAACTGGCGGGTCCAACTCAGCAATATTCGAAAAAATGCGCGAAAGTCGCGACGCCCCAGTAGAACTCAAATGGGTTGCGAAAGACTTGGCTGATGAGACAGATACAATCCAAAAACCTTCATGAATTAACAAGTGCTGAATAAGTCTAATGTTGTCAAGCCAGACAAAAGAATCAAGTTACGTCAGCTGCAATGGAGCGCTTAANGTTGAGAGGGTGCACGCTTAACAA]




>consensus_4092#0
TGAACGATGAGAGTCCGATCTCATGAGCATGTTGGCGTAGGCGATATTGAAGACGGTGTC
TCGGAGCCTACTGAAAACGTAAGTGGGAACCAACTTAAACTGGCGGGTCCAACTCAGCAA
TATTCGAAAAAATGCGCGAAAGTCGCGACGCCCCAGTAGAACTCAAATGGGTTGCGAAAG
ACTTGGCTGATGAGACAGATACAATCCAAAAACCTTCATGAATTAACAAGTGCTGAATAA
GTCTAATGTTGTCAAGCCAGACAAAAGAATCAAGTTACGTCAGCTGCAATGGAGCGCTTA
ANGTTGAGAGGGTGCACGCTTAACAA

consensusID : consensus_4092#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 307
fasta sequence

                              [ACGAAGAGAGTCCGATCTCAAGAGCAAGTTGGCGTAGGCGATATTGAAGACGGTGTCTCGGAGCCTATGAAACGTAAGTGGGAACCACTTAACTGGCGGGTCCAACTCAGCAATATTCGAAAAATGCGCGAAAGTCGCGACGCCCCAGTAGACTCAATGGGTTGCGAAAGATTGGCTGATGAGACAGAACATCCTAAAACATTCAGATTACAAGTGCTGATAAGTCTTATGTTGTCAAGCCAGACAAAAGATCAAGTTACGTCAGCTGCAATGGAGCGCTTAAAGTTGAGAGGGTGCNACGCTTACA]

[+] EMBL CD120296             [ACGAAGAGAGTCCGATCTCAAGAGCAAGTTGGCGTAGGCGATATTGAAGACGGTGTCTCGGAGCCTATGAAACGTAAGTGGGAACCACTTAACTGGCGGGTCCAACTCAGCAATATTCGAAAAATGCGCGAAAGTCGCGACGCCCCAGTAGACTCAATGGGTTGCGAAAGATTGGCTGATGAGACAGAACATCCTAAAACATTCAGATTACAAGTGCTGATAAGTCTTATGTTGTCAAGCCAGACAAAAGATCAAGTTACGTCAGCTGCAATGGAGCGCTTAAAGTTGAGAGGGTGCNACGCTTACA]




>consensus_4092#1
ACGAAGAGAGTCCGATCTCAAGAGCAAGTTGGCGTAGGCGATATTGAAGACGGTGTCTCG
GAGCCTATGAAACGTAAGTGGGAACCACTTAACTGGCGGGTCCAACTCAGCAATATTCGA
AAAATGCGCGAAAGTCGCGACGCCCCAGTAGACTCAATGGGTTGCGAAAGATTGGCTGAT
GAGACAGAACATCCTAAAACATTCAGATTACAAGTGCTGATAAGTCTTATGTTGTCAAGC
CAGACAAAAGATCAAGTTACGTCAGCTGCAATGGAGCGCTTAAAGTTGAGAGGGTGCNAC
GCTTACA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_4092#0      TGAACGATGAGAGTCCGATCTCATGAGCATGTTGGCGTAGGCGATATTGAAGACGGTGTC 60
consensus_4092#1      ---ACGAAGAGAGTCCGATCTCAAGAGCAAGTTGGCGTAGGCGATATTGAAGACGGTGTC 57
                         **** *************** ***** ******************************

consensus_4092#0      TCGGAGCCTACTGAAAACGTAAGTGGGAACCAACTTAAACTGGCGGGTCCAACTCAGCAA 120
consensus_4092#1      TCGGAGCCTAT--GAAACGTAAGTGGGAACCA--CTTAACTGGCGGGTCCAACTCAGCAA 113
                      **********    ******************   * ***********************

consensus_4092#0      TATTCGAAAAAATGCGCGAAAGTCGCGACGCCCCAGTAGAACTCAAATGGGTTGCGAAAG 180
consensus_4092#1      TATTCGAAAAA-TGCGCGAAAGTCGCGACGCCCCAGTAGA-CTCAA-TGGGTTGCGAAAG 170
                      *********** **************************** ***** *************

consensus_4092#0      ACTTGGCTGATGAGACAGATACAATCCAAAAACCTTCATGAATTAACAAGTGCTGAATAA 240
consensus_4092#1      A-TTGGCTGATGAGACAGA-ACA-TCCTAAAACATTCA--GATTA-CAAGTGCTGA-TAA 223
                      * ***************** *** *** ***** ****   **** ********** ***

consensus_4092#0      GTCTAATGTTGTCAAGCCAGACAAAAGAATCAAGTTACGTCAGCTGCAATGGAGCGCTTA 300
consensus_4092#1      GTCTTATGTTGTCAAGCCAGACAAAAGA-TCAAGTTACGTCAGCTGCAATGGAGCGCTTA 282
                      **** *********************** *******************************

consensus_4092#0      ANGTTGAGAGGGTGCACGCTTAACAA 326
consensus_4092#1      AAGTTGAGAGGGTGCNACGCTTACA- 307
                      * *************     * ***