These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_4092#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 326 fasta sequence [TGAACGATGAGAGTCCGATCTCATGAGCATGTTGGCGTAGGCGATATTGAAGACGGTGTCTCGGAGCCTACTGAAAACGTAAGTGGGAACCAACTTAAACTGGCGGGTCCAACTCAGCAATATTCGAAAAAATGCGCGAAAGTCGCGACGCCCCAGTAGAACTCAAATGGGTTGCGAAAGACTTGGCTGATGAGACAGATACAATCCAAAAACCTTCATGAATTAACAAGTGCTGAATAAGTCTAATGTTGTCAAGCCAGACAAAAGAATCAAGTTACGTCAGCTGCAATGGAGCGCTTAANGTTGAGAGGGTGCACGCTTAACAA] [+] EMBL CD120137 [TGAACGATGAGAGTCCGATCTCATGAGCATGTTGGCGTAGGCGATATTGAAGACGGTGTCTCGGAGCCTACTGAAAACGTAAGTGGGAACCAACTTAAACTGGCGGGTCCAACTCAGCAATATTCGAAAAAATGCGCGAAAGTCGCGACGCCCCAGTAGAACTCAAATGGGTTGCGAAAGACTTGGCTGATGAGACAGATACAATCCAAAAACCTTCATGAATTAACAAGTGCTGAATAAGTCTAATGTTGTCAAGCCAGACAAAAGAATCAAGTTACGTCAGCTGCAATGGAGCGCTTAANGTTGAGAGGGTGCACGCTTAACAA] consensusID : consensus_4092#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 307 fasta sequence [ACGAAGAGAGTCCGATCTCAAGAGCAAGTTGGCGTAGGCGATATTGAAGACGGTGTCTCGGAGCCTATGAAACGTAAGTGGGAACCACTTAACTGGCGGGTCCAACTCAGCAATATTCGAAAAATGCGCGAAAGTCGCGACGCCCCAGTAGACTCAATGGGTTGCGAAAGATTGGCTGATGAGACAGAACATCCTAAAACATTCAGATTACAAGTGCTGATAAGTCTTATGTTGTCAAGCCAGACAAAAGATCAAGTTACGTCAGCTGCAATGGAGCGCTTAAAGTTGAGAGGGTGCNACGCTTACA] [+] EMBL CD120296 [ACGAAGAGAGTCCGATCTCAAGAGCAAGTTGGCGTAGGCGATATTGAAGACGGTGTCTCGGAGCCTATGAAACGTAAGTGGGAACCACTTAACTGGCGGGTCCAACTCAGCAATATTCGAAAAATGCGCGAAAGTCGCGACGCCCCAGTAGACTCAATGGGTTGCGAAAGATTGGCTGATGAGACAGAACATCCTAAAACATTCAGATTACAAGTGCTGATAAGTCTTATGTTGTCAAGCCAGACAAAAGATCAAGTTACGTCAGCTGCAATGGAGCGCTTAAAGTTGAGAGGGTGCNACGCTTACA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_4092#0 TGAACGATGAGAGTCCGATCTCATGAGCATGTTGGCGTAGGCGATATTGAAGACGGTGTC 60 consensus_4092#1 ---ACGAAGAGAGTCCGATCTCAAGAGCAAGTTGGCGTAGGCGATATTGAAGACGGTGTC 57 **** *************** ***** ****************************** consensus_4092#0 TCGGAGCCTACTGAAAACGTAAGTGGGAACCAACTTAAACTGGCGGGTCCAACTCAGCAA 120 consensus_4092#1 TCGGAGCCTAT--GAAACGTAAGTGGGAACCA--CTTAACTGGCGGGTCCAACTCAGCAA 113 ********** ****************** * *********************** consensus_4092#0 TATTCGAAAAAATGCGCGAAAGTCGCGACGCCCCAGTAGAACTCAAATGGGTTGCGAAAG 180 consensus_4092#1 TATTCGAAAAA-TGCGCGAAAGTCGCGACGCCCCAGTAGA-CTCAA-TGGGTTGCGAAAG 170 *********** **************************** ***** ************* consensus_4092#0 ACTTGGCTGATGAGACAGATACAATCCAAAAACCTTCATGAATTAACAAGTGCTGAATAA 240 consensus_4092#1 A-TTGGCTGATGAGACAGA-ACA-TCCTAAAACATTCA--GATTA-CAAGTGCTGA-TAA 223 * ***************** *** *** ***** **** **** ********** *** consensus_4092#0 GTCTAATGTTGTCAAGCCAGACAAAAGAATCAAGTTACGTCAGCTGCAATGGAGCGCTTA 300 consensus_4092#1 GTCTTATGTTGTCAAGCCAGACAAAAGA-TCAAGTTACGTCAGCTGCAATGGAGCGCTTA 282 **** *********************** ******************************* consensus_4092#0 ANGTTGAGAGGGTGCACGCTTAACAA 326 consensus_4092#1 AAGTTGAGAGGGTGCNACGCTTACA- 307 * ************* * *** |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||