cluster # 41

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Schistosoma mansoni
cluster # 41 cluster # 41 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_41#0 length = 416 sequences # 1

consensus_41#1 length = 347 sequences # 1

consensusID : consensus_41#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 416
fasta sequence

                              [TGGAAGGAAATAAACCTTCGTTTACACATGATTTCAACTGTCTTATTGATTTTTATGCCAGTCCGATGTATTATTATCACGTAGTCCATTTCTAAATGTAAATGATATTAAATCCAATTCGAAGCTCTCGCATTTATTGGATCCAGGTTATCAACGGTCTGTGATTGATATACTGTTGTGTTATTTCGATTGGGTGTCATTAGATTCATTTATGCAAACCAGTCAATCATTATGGAATACATATCAGTACATTCATAAATCAAATATGAAAGTTTCTAATGAGAATGAGAATGTAAACGTGTTATCAACGGTATCACCGGAATCAAGCGTTNTACGTTTACAAAACAGTGAATCTCATGAACATCGNATTGAACTGTCATGTTCATCGTCATTCGAAGTTTTATTTTCATCATCGT]

[+] EMBL CD178619             [TGGAAGGAAATAAACCTTCGTTTACACATGATTTCAACTGTCTTATTGATTTTTATGCCAGTCCGATGTATTATTATCACGTAGTCCATTTCTAAATGTAAATGATATTAAATCCAATTCGAAGCTCTCGCATTTATTGGATCCAGGTTATCAACGGTCTGTGATTGATATACTGTTGTGTTATTTCGATTGGGTGTCATTAGATTCATTTATGCAAACCAGTCAATCATTATGGAATACATATCAGTACATTCATAAATCAAATATGAAAGTTTCTAATGAGAATGAGAATGTAAACGTGTTATCAACGGTATCACCGGAATCAAGCGTTNTACGTTTACAAAACAGTGAATCTCATGAACATCGNATTGAACTGTCATGTTCATCGTCATTCGAAGTTTTATTTTCATCATCGT]




>consensus_41#0
TGGAAGGAAATAAACCTTCGTTTACACATGATTTCAACTGTCTTATTGATTTTTATGCCA
GTCCGATGTATTATTATCACGTAGTCCATTTCTAAATGTAAATGATATTAAATCCAATTC
GAAGCTCTCGCATTTATTGGATCCAGGTTATCAACGGTCTGTGATTGATATACTGTTGTG
TTATTTCGATTGGGTGTCATTAGATTCATTTATGCAAACCAGTCAATCATTATGGAATAC
ATATCAGTACATTCATAAATCAAATATGAAAGTTTCTAATGAGAATGAGAATGTAAACGT
GTTATCAACGGTATCACCGGAATCAAGCGTTNTACGTTTACAAAACAGTGAATCTCATGA
ACATCGNATTGAACTGTCATGTTCATCGTCATTCGAAGTTTTATTTTCATCATCGT

consensusID : consensus_41#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 347
fasta sequence

                              [AAAGCAGTAATGGACAAGGCGATATCATGTCGTTTAGCAACTCAATGATCAACCAATATTTTTCGAAATGTTCTNNGTTAAATATTTGCTTCTTTTTTCGTAATTTCAGTGATTTCAACTGTCTTATTGATTTTTTATGCCAGTCCGATGTATTATTATCACGTAGTCCATTTCTAAATGTAAATGATATTAAATCCAATTCGAAGCTCTCGCATTTATTGGATCCAGGTTATCAACGGTCTGTGGTGAGTAACTCCCACTACAGATGACTTTGTTTTCTGTCGTCCTACCAGTTTTTCTTTATTTTAATAGGCTAGTTTTTATCTAATGTAATAATATTATTTTCT]

[-] EMBL CD120182             [AAAGCAGTAATGGACAAGGCGATATCATGTCGTTTAGCAACTCAATGATCAACCAATATTTTTCGAAATGTTCTNNGTTAAATATTTGCTTCTTTTTTCGTAATTTCAGTGATTTCAACTGTCTTATTGATTTTTTATGCCAGTCCGATGTATTATTATCACGTAGTCCATTTCTAAATGTAAATGATATTAAATCCAATTCGAAGCTCTCGCATTTATTGGATCCAGGTTATCAACGGTCTGTGGTGAGTAACTCCCACTACAGATGACTTTGTTTTCTGTCGTCCTACCAGTTTTTCTTTATTTTAATAGGCTAGTTTTTATCTAATGTAATAATATTATTTTCT]




>consensus_41#1
AAAGCAGTAATGGACAAGGCGATATCATGTCGTTTAGCAACTCAATGATCAACCAATATT
TTTCGAAATGTTCTNNGTTAAATATTTGCTTCTTTTTTCGTAATTTCAGTGATTTCAACT
GTCTTATTGATTTTTTATGCCAGTCCGATGTATTATTATCACGTAGTCCATTTCTAAATG
TAAATGATATTAAATCCAATTCGAAGCTCTCGCATTTATTGGATCCAGGTTATCAACGGT
CTGTGGTGAGTAACTCCCACTACAGATGACTTTGTTTTCTGTCGTCCTACCAGTTTTTCT
TTATTTTAATAGGCTAGTTTTTATCTAATGTAATAATATTATTTTCT

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_41#0      ------------------------------------------------------------
consensus_41#1      AAAGCAGTAATGGACAAGGCGATATCATGTCGTTTAGCAACTCAATGATCAACCAATATT 60
                                                                                

consensus_41#0      --------------TGGAAGGAAATAAACCTTCGTTTACACA-------TGATTTCAACT 39
consensus_41#1      TTTCGAAATGTTCTNNGTTAAATATTTGCTTCTTTTTTCGTAATTTCAGTGATTTCAACT 120
                                    *    * **   * *   *** *  *       ***********

consensus_41#0      GTCTTATTGATTTTT-ATGCCAGTCCGATGTATTATTATCACGTAGTCCATTTCTAAATG 98
consensus_41#1      GTCTTATTGATTTTTTATGCCAGTCCGATGTATTATTATCACGTAGTCCATTTCTAAATG 180
                    *************** ********************************************

consensus_41#0      TAAATGATATTAAATCCAATTCGAAGCTCTCGCATTTATTGGATCCAGGTTATCAACGGT 158
consensus_41#1      TAAATGATATTAAATCCAATTCGAAGCTCTCGCATTTATTGGATCCAGGTTATCAACGGT 240
                    ************************************************************

consensus_41#0      CTGTGATTGATATACTGTTGTGTTATTTCGATTGGGTGTCATTAGATTCATTTATGCAAA 218
consensus_41#1      CTGTGGTGAGTA-ACTCCCACTACA---------GATGACTTTGTTTTCTGTCGT-CCTA 289
                    ***** *   ** ***        *         * ** * **   ***  *  * *  *

consensus_41#0      CCAGTCAATCATTATGGAATACATATCAGTACATTCATAAATCAAATATGAAAGTTTCTA 278
consensus_41#1      CCAGTTTTTCTTTATTTTA-ATAGGCTAGTTTTTATCTAATGTAATAATATTATTTTCT- 347
                    *****   ** ****   * * *    ***   *   ***   **  **   * ***** 

consensus_41#0      ATGAGAATGAGAATGTAAACGTGTTATCAACGGTATCACCGGAATCAAGCGTTNTACGTT 338
consensus_41#1      ------------------------------------------------------------
                                                                                

consensus_41#0      TACAAAACAGTGAATCTCATGAACATCGNATTGAACTGTCATGTTCATCGTCATTCGAAG 398
consensus_41#1      ------------------------------------------------------------
                                                                                

consensus_41#0      TTTTATTTTCATCATCGT 416
consensus_41#1      ------------------