These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_4100#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 603 fasta sequence [GGGTTCTGAGGAGCTTATTGCACTTGGTTTAAAAGATGAAGATGCGAAACTCCTAATGCAGTTATTGGAGTGTGGTTGCAGAATGAAAACAATACTAGCCTTCGCTAGCTCAAAACTGCTTAGGCCACTGACTTCTTCGGAAATCAAGATACTTCGTAATCAAGTTTTTCCTGGTTCCAAGGAACTTTCGGACGTACTGGATGAGATACGTAAAGATTCCATTGTATTCGTGGAGCAGTGTGACTGTGGGATTACTCAAGTCTCTTTGTCACACTACGAGCAGATCGAGTTATATAAGCGGTTCCCAGAAGTTCTTAGTTTCAGTGTCACCTACAACGTTAGTCTCGTTGGGCTTACCATTTTCCAGATAGCTGTGACAGATGGTCTTCTGCGTACAAGACCCATAATGTTTTCATTACATTCCACAGAACAAACAGAAAATTTGTGCATTTTGCTAAAGCATTTCCGTGAAATTTTTAAGGATGTTAGTTCAACTCTGACAGTAGCTGTAGATTGCCCAGTTTCTAGACCAGAGTTAGTGCAAGAATCCTTTCCAACCGCAAGGATTGTTTTGAGTTCATCATACATTAGGAAGGTCTTCAA] [+] EMBL CD178610 [GGGTTCTGAGGAGCTTATTGCACTTGGTTTAAAAGATGAAGATGCGAAACTCCTAATGCAGTTATTGGAGTGTGGTTGCAGAATGAAAACAATACTAGCCTTCGCTAGCTCAAAACTGCTTAGGCCACTGACTTCTTCGGAAATCAAGATACTTCGTAATCAAGTTTTTCCTGGTTCCAAGGAACTTTCGGACGTACTGGATGAGATACGTAAAGATTCCATTGTATTCGTGGAGCAGTGTGACTGTGGGATTACTCAAGTCTCTTTGTCACACTACGAGCAGATCGAGTTATATAAGCGGTTCCCAGAAGTTCTTAGTTTCAGTGTCACCTACAACGTTAGTCTCGTTGGGCTTACCATTTTCCAGATAGCTGTGACAGATGGTCTTCTGCGTACAAGACCCATAATGTTTTCATTACATTCCACAGAACAAACAGAAAATTTGTGCATTTTGCTAAAGCATTTCCGTGAAATTTTTAAGGATGTTAGTTCAACTCTGACAGTAGCTGTAGATTGCCCAGTTTCTAGACCAGAGTTAG ] [+] EMBL CD065606 [ TGGATGAGATACGTAAAGATTCCATTGTATTCGTGGAGCAGTGTGACTGTGAGATTACTCAAGTCTCTTTGTCACACTACGAGCAGATCGAGTTATATAAGCGGTTCCCAGAAGTTCTTAGTTTCAGTGTCACCTACAACGTTAGTCTCGTTGGGCTTACCATTTTCCAGATAGCTGTGACAGATGGTCTTCTGCGTACAAGACCCATAATGTTTTCATTACATTCCACAGAACAAACAGAAAATTTGTGCATTTTGCTAAAGCATTTCCGTGAAATTTTTAAGGATGTTAGTTCAACTCTGACAGTAGCTGTAGATTGCCCAGTTTCTAGACCAGAGTTAGTGCAAGAATCCTTTCCAACCGCAAGGATTGTTTTGAGTTCATCATACATTAGGAAGGTCTTCAA] consensusID : consensus_4100#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 337 fasta sequence [CGTAATCAAGTTTTTCCTGGTTTGATTGATTGCATGAAATTATTCATATTTAGGTTCCAAGGAACTTTCGGACGTACTGGATGAGATACGTAAAGATTCCATTGTATTCGTGGAGCGGTGTGACTGTGAGATTACTCAAGTCTCTTTGTCACACTACGAGCAGATCGAGTTATATAAGCGGTTCCCAGAAGTTCTTAGTTTCAGTGTCACCTACAACGTTAGTCTCGTTGGGCTTACCATTTTCCAGATAGCTGTGACAGATGGTCTTCTGCGTACAAGACCCATAATGTTTTCATTACATTCCACAGAACAAACAGAAAATTTGCGCATTTTGCTA] [-] EMBL CD097206 [CGTAATCAAGTTTTTCCTGGTTTGATTGATTGCATGAAATTATTCATATTTAGGTTCCAAGGAACTTTCGGACGTACTGGATGAGATACGTAAAGATTCCATTGTATTCGTGGAGCGGTGTGACTGTGAGATTACTCAAGTCTCTTTGTCACACTACGAGCAGATCGAGTTATATAAGCGGTTCCCAGAAGTTCTTAGTTTCAGTGTCACCTACAACGTTAGTCTCGTTGGGCTTACCATTTTCCAGATAGCTGTGACAGATGGTCTTCTGCGTACAAGACCCATAATGTTTTCATTACATTCCACAGAACAAACAGAAAATTTGCGCATTTTGCTA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_4100#0 GGGTTCTGAGGAGCTTATTGCACTTGGTTTAAAAGATGAAGATGCGAAACTCCTAATGCA 60 consensus_4100#1 ------------------------------------------------------------ consensus_4100#0 GTTATTGGAGTGTGGTTGCAGAATGAAAACAATACTAGCCTTCGCTAGCTCAAAACTGCT 120 consensus_4100#1 ------------------------------------------------------------ consensus_4100#0 TAGGCCACTGACTTCTTCGGAAATCAAGATACTTCGT--AATCAAGTTTTTCCTGGTTCC 178 consensus_4100#1 --CGTAATCAAGTTTTTCCTGGTTTGATTGATTGCATGAAATTATTCATATTTAGGTTCC 58 * * * ** *** * * * * * * *** * * * ****** consensus_4100#0 AAGGAACTTTCGGACGTACTGGATGAGATACGTAAAGATTCCATTGTATTCGTGGAGCAG 238 consensus_4100#1 AAGGAACTTTCGGACGTACTGGATGAGATACGTAAAGATTCCATTGTATTCGTGGAGCGG 118 ********************************************************** * consensus_4100#0 TGTGACTGTGGGATTACTCAAGTCTCTTTGTCACACTACGAGCAGATCGAGTTATATAAG 298 consensus_4100#1 TGTGACTGTGAGATTACTCAAGTCTCTTTGTCACACTACGAGCAGATCGAGTTATATAAG 178 ********** ************************************************* consensus_4100#0 CGGTTCCCAGAAGTTCTTAGTTTCAGTGTCACCTACAACGTTAGTCTCGTTGGGCTTACC 358 consensus_4100#1 CGGTTCCCAGAAGTTCTTAGTTTCAGTGTCACCTACAACGTTAGTCTCGTTGGGCTTACC 238 ************************************************************ consensus_4100#0 ATTTTCCAGATAGCTGTGACAGATGGTCTTCTGCGTACAAGACCCATAATGTTTTCATTA 418 consensus_4100#1 ATTTTCCAGATAGCTGTGACAGATGGTCTTCTGCGTACAAGACCCATAATGTTTTCATTA 298 ************************************************************ consensus_4100#0 CATTCCACAGAACAAACAGAAAATTTGTGCATTTTGCTAAAGCATTTCCGTGAAATTTTT 478 consensus_4100#1 CATTCCACAGAACAAACAGAAAATTTGCGCATTTTGCTA--------------------- 337 *************************** *********** consensus_4100#0 AAGGATGTTAGTTCAACTCTGACAGTAGCTGTAGATTGCCCAGTTTCTAGACCAGAGTTA 538 consensus_4100#1 ------------------------------------------------------------ consensus_4100#0 GTGCAAGAATCCTTTCCAACCGCAAGGATTGTTTTGAGTTCATCATACATTAGGAAGGTC 598 consensus_4100#1 ------------------------------------------------------------ consensus_4100#0 TTCAA 603 consensus_4100#1 ----- |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||