These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_4103#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 793 fasta sequence [CCCGGCCAANAATTTGGCACGAGGACAAATGTTGAATCGACCTATGAAAATCACAAACAATATGTTGTAAATACTTCACAAAACACTAGCCACATTTGCTTACGAAATTTATACCATAGAAGAAATCCAACTAATCAAATTAATGTCAACAATCAGTTGGTTGATAACGATGCTAACAAGCAAACCCTATCTAGTTCTGATGAAACATTTGAAGTGAACAATTTATCATTAGATCCTGTCTCATTCAACTATAGTCGACGTCCTACTTTGATGACTGCTTCAAATTACTTGAAATCAAATTCAACTAACACGAACAGTAATCAACGGAAACCTGTTATTAAAAAAAGTCCTAATTCATCAACTTCAAGAAATAGTTCTTTCCGATCGGAGAACATTGATACATTCGCTACATGCAGCTCTCCGAAGAAATCGATGCACAGTTTTAAAAGAAGATCAAAACCACTAATTAATTCAGTCAGTCAATTATTACCTATTACAGAACCTGATGAAAACACGTCTAAATGTTTTCCAAACCTTTATTGTGAAAGTGATTTCCAGTTGCTTTCAAAATCACCATGTGAACCTTGGCGAGATGACACTGGTCGACTTGCTTCAGTGCATGATTTCATTAACTNTGTATGCTTTCACGATTGCTCAATGACTGGAGATCCTAATACAGAATGGTTCGCTAGTCCCTACAGTATGCACAGTCTACCTGTGCCACGTACGTTACAAAGTAATCTAGGGCCATCTAACTCCGACCATAATAATAAAATGTATCCCAAGACCCCCA] [+] EMBL CD082309 [CCCGGCCAANAATTTGGCACGAGGACAAATGTTGAATCGACCTATGAAAATCACAAACAATATGTTGTAAATACTTCACAAAACACTAGCCACATTTGCTTACGAAATTTATACCATAGAAGAAATCCAACTAATCAAATTAATGTCAACAATCAGTTGGTTGATAACGATGCTAACAAGCAAACCCTATCTAGTTCTGATGAAACATTTGAAGTGAACAATTTATCATTAGATCCTGTCTCATTCAACTATAGTCGACGTCCTACTTTGATGACTGCTTCAAATTACTTGAAATCAAATTCAACTAACACGAACAGTAATCAACGGAAACCTGTTATTAAAAAAAGTCCTAATTCATCAACTTCAAGAAATAGTTCTTTCCGATCGGAGAACATTGATACATTCGCTACATGCAGCTCTCCGAAGAAATCGATGCACAGTTTTAAAAGAAGATCAAAACCACTAATTAATTCAGTCAGTCAATTATTACCTATTACAGAACCTGATGAAAACACGTCTAAATGTTTTCCAAACCTTTATTGTGAAAGTGATTTCCAGTTGCTTTCAAAATCACCATGTGAACCTTGGCGAGATGACACTGGTCGACTTGCTTCAGTGCATGATTTCATTAACTNTGTATGCTTTCACGATTGCTCAATGACTGGAGATCCTA ] [+] EMBL CD181770 [ GTCTAAATGTTTTCCAAACCTTTATTGTGAAAGTGATTTCCAGTTGCTTTCAAAATCACCATGTGAACCTTGGCGAGATGACACTGGTCGACTTGCTTCAGTGCATGATTTCATTAACTTTGTATGCTTTCACGATTGCTCAATGACTGGAGATCCTAATACAGAATGGTTCGCTAGTCCCTACAGTATGCACAGTCTACCTGTGCCACGTACGTTACAAAGTAATCTAGGGCCATCTAACTCCGACCATAATAATAAAATGTATCCCAAGACCCCCA] consensusID : consensus_4103#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 102 fasta sequence [TGAAGTATTTACAACATATTGTTTGTGATTTTCATAGGTCGATTCAACATTTGTTTTATTGCTGTTTGAATCACATTTAAATACTTCTTTATCTGGAGATCT] [+] EMBL CD120619 [TGAAGTATTTACAACATATTGTTTGTGATTTTCATAGGTCGATTCAACATTTGTTTTATTGCTGTTTGAATCACATTTAAATACTTCTTTATCTGGAGATCT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_4103#0 CCCGGCCAANAATTTGGCACGAGGACAAATGTTGAATCGACCTATGAAAATCACAAACAA 60 consensus_4103#1 ------------------------------------------------------------ consensus_4103#0 TATGTTGTAAATACTTCACAAAACACTAGCCACATTTGCTTACGAAATTTATACCATAGA 120 consensus_4103#1 ------------------------------------------------------------ consensus_4103#0 AGAAATCCAACTAATCAAATTAATGTCAACAATCAGTTGGTTGATAACGATGCTAACAAG 180 consensus_4103#1 ------------------------------------------------------------ consensus_4103#0 CAAACCCTATCTAGTTCTGATGAAACATTTGAAGTGAACAATTTATCATTAGATCCTGTC 240 consensus_4103#1 --------------------TGAAGTATTTACAACATATTGTTTGTGATTTTCATAGGTC 40 **** **** * * *** * *** *** consensus_4103#0 TCATTCAACTATAGTCGACGTCCTACTTTGATGACTGCTTCAAATTACTTGAAATCAAAT 300 consensus_4103#1 G-ATTCAACATTTGTTTTATTGCTGTTTGAATCACATTTAAATACTTCTTTATCTGGAGA 99 ******* * ** * ** ** ** ** * * * * *** * * * consensus_4103#0 TCAACTAACACGAACAGTAATCAACGGAAACCTGTTATTAAAAAAAGTCCTAATTCATCA 360 consensus_4103#1 TCT--------------------------------------------------------- 102 ** consensus_4103#0 ACTTCAAGAAATAGTTCTTTCCGATCGGAGAACATTGATACATTCGCTACATGCAGCTCT 420 consensus_4103#1 ------------------------------------------------------------ consensus_4103#0 CCGAAGAAATCGATGCACAGTTTTAAAAGAAGATCAAAACCACTAATTAATTCAGTCAGT 480 consensus_4103#1 ------------------------------------------------------------ consensus_4103#0 CAATTATTACCTATTACAGAACCTGATGAAAACACGTCTAAATGTTTTCCAAACCTTTAT 540 consensus_4103#1 ------------------------------------------------------------ consensus_4103#0 TGTGAAAGTGATTTCCAGTTGCTTTCAAAATCACCATGTGAACCTTGGCGAGATGACACT 600 consensus_4103#1 ------------------------------------------------------------ consensus_4103#0 GGTCGACTTGCTTCAGTGCATGATTTCATTAACTNTGTATGCTTTCACGATTGCTCAATG 660 consensus_4103#1 ------------------------------------------------------------ consensus_4103#0 ACTGGAGATCCTAATACAGAATGGTTCGCTAGTCCCTACAGTATGCACAGTCTACCTGTG 720 consensus_4103#1 ------------------------------------------------------------ consensus_4103#0 CCACGTACGTTACAAAGTAATCTAGGGCCATCTAACTCCGACCATAATAATAAAATGTAT 780 consensus_4103#1 ------------------------------------------------------------ consensus_4103#0 CCCAAGACCCCCA 793 consensus_4103#1 ------------- |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||