cluster # 4107

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Schistosoma mansoni
cluster # 4107 cluster # 4107 Sequences # 3 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_4107#0 length = 473 sequences # 2

consensus_4107#1 length = 422 sequences # 1

consensusID : consensus_4107#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 473
fasta sequence

                              [CGAGGAATATATATTGTCTATGTATGCATTTTCAATTATTTACTTATACAAAGTTGCAAGTATTCGTTTGCCAAAAAATATTAACGCATTAAAGTACAATAGGTTTATCAGAAAAGGGTTTTTGGGAAGATTTTAGTAATTTTATGTAGTTGAAATCATAAGACAAATGAAGTAAGACCATTATGCAAAACTTGGAAGTACTGGATGGCTCAGTGATCTAATGGTTGAGCGGTCACGTACGAAACTGATAGATCCTGGGTTTGAATCTCACAAGGTGGGATTGTCGATGTGCACTGCCACTGAGGAGTCCCACTATGGGACGAAACTGCCGTTCAGTTCTTTCAGGTTTTCTATGGTGATCTAGCTTCAATTGACTCCGGATTTCAACTAATAAAATTACTATTTGTTTGTTTTTTTCTTTTTTTGATAAAAAATATCTCTATTAAAAATTAAAAGAAAAAAAAAAAAAAAAA]

[+] EMBL CD082190             [CGAGGAATATATATTGTCTATGTATGCATTTTCAATTATTTACTTATACAAAGTTGCAAGTATTCGTTTGCCAAAAAATATTAACGCATTAAAGTACAATAGGTTTATCAGAAAAGGGTTTTTGGGAAGATTTTAGTAATTTTATGTAGTTGAAATCATAAGACAAATGAAGTAAGACCATTATGCAAAACTTGGAAGTACTGGATGGCTCAGTGATCTAATGGTTGAGCGGTCACGTACGAAACTGATAGATCCTGGGTTTGAATCTCACAAGGTGGGATTGTCGATGTGCACTGCCACTGAGGAGTCCCACTATGGGACGAAACTGCCGTTCAGTTCTTTCAGGTTTTCTATGGTGATCTAGCTTCAATTGACTCCGGATTTCAACTAATAAAATTACTATTTGTTTGTTTTTTTCTTTTTTTGATAAAAAA                                       ]
[-] EMBL AI395146             [                                                                                                                                                                        GACGTAAGACCATTATGCAAAACTTGGAAGTACTGGATGGCTCAGTGATCTAATGGTTGAGCGGTCACGTACGAAACTGATAGATCCTGGGTTTGAATCTCACAAGGTGGGATTGTCGATGTGCACTGCCACTGAGGAGTCCCACTATGGGACGAAACTGCCGTTCAGTTCTTTCAGGTTTTCTATGGTGATCTAGCTTCAATTGACTCCGGATTTCAACTAATAAAATTACTATTTGTTTGTTTTTTTCTTTTTTTGATAAAAAATATCTCTATTAAAAATTAAAAGAAAAAAAAAAAAAAAAA]




>consensus_4107#0
CGAGGAATATATATTGTCTATGTATGCATTTTCAATTATTTACTTATACAAAGTTGCAAG
TATTCGTTTGCCAAAAAATATTAACGCATTAAAGTACAATAGGTTTATCAGAAAAGGGTT
TTTGGGAAGATTTTAGTAATTTTATGTAGTTGAAATCATAAGACAAATGAAGTAAGACCA
TTATGCAAAACTTGGAAGTACTGGATGGCTCAGTGATCTAATGGTTGAGCGGTCACGTAC
GAAACTGATAGATCCTGGGTTTGAATCTCACAAGGTGGGATTGTCGATGTGCACTGCCAC
TGAGGAGTCCCACTATGGGACGAAACTGCCGTTCAGTTCTTTCAGGTTTTCTATGGTGAT
CTAGCTTCAATTGACTCCGGATTTCAACTAATAAAATTACTATTTGTTTGTTTTTTTCTT
TTTTTGATAAAAAATATCTCTATTAAAAATTAAAAGAAAAAAAAAAAAAAAAA

consensusID : consensus_4107#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 422
fasta sequence

                              [CATTGGGACTGTGTATTGCTAGGCGCCAGTGCCGTTTGACAGACAATATTAACACATTAAAGTACAATAGGTTTATCAGAAAAGGGTTTTTGGGAAGATTTTAGTAATTTTAGATAGTTGAAATCATAAGACAAATGAAGTAAGACCATTATGCAAAACTTGGCAGTACTGGATGGCTCAGTGATCTAATGGTTGAGCGGTCACGTACGAAACTGATAGATCCTGGGTTTGAATCTCACAAGGTGGGATTGTCCATGTGCACTGCCACTGAGGAGTCCCACTATGGGACGAAACTGCCGTTCAGTTCTTTCAGGTTTTCTATGGAGATCTAGCTTCAATTGACTCCGGATTTCATCTAATAAGACTACTAGTTGTTTGCTTTTTTCTTTTTTTGATAAAAAAATCTCTATTAAAATTAACCT]

[+] EMBL AI395072             [CATTGGGACTGTGTATTGCTAGGCGCCAGTGCCGTTTGACAGACAATATTAACACATTAAAGTACAATAGGTTTATCAGAAAAGGGTTTTTGGGAAGATTTTAGTAATTTTAGATAGTTGAAATCATAAGACAAATGAAGTAAGACCATTATGCAAAACTTGGCAGTACTGGATGGCTCAGTGATCTAATGGTTGAGCGGTCACGTACGAAACTGATAGATCCTGGGTTTGAATCTCACAAGGTGGGATTGTCCATGTGCACTGCCACTGAGGAGTCCCACTATGGGACGAAACTGCCGTTCAGTTCTTTCAGGTTTTCTATGGAGATCTAGCTTCAATTGACTCCGGATTTCATCTAATAAGACTACTAGTTGTTTGCTTTTTTCTTTTTTTGATAAAAAAATCTCTATTAAAATTAACCT]




>consensus_4107#1
CATTGGGACTGTGTATTGCTAGGCGCCAGTGCCGTTTGACAGACAATATTAACACATTAA
AGTACAATAGGTTTATCAGAAAAGGGTTTTTGGGAAGATTTTAGTAATTTTAGATAGTTG
AAATCATAAGACAAATGAAGTAAGACCATTATGCAAAACTTGGCAGTACTGGATGGCTCA
GTGATCTAATGGTTGAGCGGTCACGTACGAAACTGATAGATCCTGGGTTTGAATCTCACA
AGGTGGGATTGTCCATGTGCACTGCCACTGAGGAGTCCCACTATGGGACGAAACTGCCGT
TCAGTTCTTTCAGGTTTTCTATGGAGATCTAGCTTCAATTGACTCCGGATTTCATCTAAT
AAGACTACTAGTTGTTTGCTTTTTTCTTTTTTTGATAAAAAAATCTCTATTAAAATTAAC
CT

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_4107#0      CGAGGAATATATATTGTCTATGTATGCATTTTCAATTATTTACTTATACAAAGTTGCAAG 60
consensus_4107#1      --------------------------CATTGG-GACTGTGTATTGCT----AGGCGCCAG 29
                                                ****    * * * ** *  *    **  ** **

consensus_4107#0      TATTCGTTTGCCAAAAAATATTAACGCATTAAAGTACAATAGGTTTATCAGAAAAGGGTT 120
consensus_4107#1      TGC-CGTTTGACAGACAATATTAACACATTAAAGTACAATAGGTTTATCAGAAAAGGGTT 88
                      *   ****** ** * ********* **********************************

consensus_4107#0      TTTGGGAAGATTTTAGTAATTTTATGTAGTTGAAATCATAAGACAAATGAAGTAAGACCA 180
consensus_4107#1      TTTGGGAAGATTTTAGTAATTTTAGATAGTTGAAATCATAAGACAAATGAAGTAAGACCA 148
                      ************************  **********************************

consensus_4107#0      TTATGCAAAACTTGGAAGTACTGGATGGCTCAGTGATCTAATGGTTGAGCGGTCACGTAC 240
consensus_4107#1      TTATGCAAAACTTGGCAGTACTGGATGGCTCAGTGATCTAATGGTTGAGCGGTCACGTAC 208
                      *************** ********************************************

consensus_4107#0      GAAACTGATAGATCCTGGGTTTGAATCTCACAAGGTGGGATTGTCGATGTGCACTGCCAC 300
consensus_4107#1      GAAACTGATAGATCCTGGGTTTGAATCTCACAAGGTGGGATTGTCCATGTGCACTGCCAC 268
                      ********************************************* **************

consensus_4107#0      TGAGGAGTCCCACTATGGGACGAAACTGCCGTTCAGTTCTTTCAGGTTTTCTATGGTGAT 360
consensus_4107#1      TGAGGAGTCCCACTATGGGACGAAACTGCCGTTCAGTTCTTTCAGGTTTTCTATGGAGAT 328
                      ******************************************************** ***

consensus_4107#0      CTAGCTTCAATTGACTCCGGATTTCAACTAATAAAATTACTATTTGTTTGTTTTTTTCTT 420
consensus_4107#1      CTAGCTTCAATTGACTCCGGATTTCATCTAATAAGACTACTAGTTGTTTGCTTTTTTCTT 388
                      ************************** ******* * ***** ******* *********

consensus_4107#0      TTTTTGATAAAAAATATCTCTATTAAAAATTAAAAGAAAAAAAAAAAAAAAAA 473
consensus_4107#1      TTTTTGATAAAAAA-ATCTCTATTAAAA-TTAACCT----------------- 422
                      ************** ************* ****