These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_4110#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 1044 fasta sequence [ACGAGGACGAATTTCTACGTATGCATTGTTCTTGTTTTCATTCGTCGAATTTCTTCTATGCATCACATGGGCACTTGTGACTGATATGACTATGGGAGTAGTTATTCCTACTCGCCGTTCGACAGCATCTGCGCTTCAAATGGTTATGAGTCATGCACTAGGGGATGCCATCAGTCCGGCTATCGTTGGTCGGATTGCAGTAGCTCTTACAGATCTGCATTCATTAGAAACACAATATTTAGGCTTACAAAGAGCATTATTTCTTACTGCGTTTGTTTGTGCTCTGGGAGGTTTTTTATTTCTTATAGTTACTTTATATTTGGTTAAAGCTAAGAATGATGTTCATAGAGCTATTCAAGCTTCTCAACATGACATGGTTGCTGTAATAAGCGGACAAGAAATTGAGGTTCCTGCAACCCCATCATCTACTCATAATGAAGTGTTCACTTGATCAAATATATTCATTATTAATTGTTTATATATATATACTTATACGTCTATTCAACTTTATACTGCTCTTATTATCTCTTGATATTAAATTATTTTATTTCCGTTTCCATCGTTNTGTATTATAAAAAGT-AGCTAATAGCANACAGATAGAATTNTGATACATTGAAAGGTCAGCATTTGTTTTCTTTATAGTTACATTTGTTACTCTAACAGGTTGTCTATCTATCTATCTATGTCATCAAGGCAGTAGATTTTGTGTCTTGTTGAACTAATATTCTTATTGTTAGATTTGTGAATTACTTGTTCTCTTTTTTTAAGTATCATTATTACCTTTTATTCTCTTTACTATTAATACAGAAATCGTACTGTTCTATGTATATTCAATTTAATAATACTTAAATGATTAAATCATCATTGTATTTGTAATAGGGGTAATTTCAACAATATTTGAAGATAAAACATCAGTCAATCATTATTGTGTAAAATGTTCGGTTTTAATGGGGATCTCTTCTCTGTATATGTTTTCTTTTCACTTATATTTCAAAAAAATAATTTTAATATGTGAACTATTGGGTTTATCAGATCATAATAATT] [+] EMBL CD082262 [ACGAGGACGAATTTCTACGTATGCATTGTTCTTGTTTTCATTCGTCGAATTTCTTCTATGCATCACATGGGCACTTGTGACTGATATGACTATGGGAGTAGTTATTCCTACTCGCCGTTCGACAGCATCTGCGCTTCAAATGGTTATGAGTCATGCACTAGGGGATGCCATCAGTCCGGCTATCGTTGGTCGGATTGCAGTAGCTCTTACAGATCTGCATTCATTAGAAACACAATATTTAGGCTTACAAAGAGCATTATTTCTTACTGCGTTTGTTTGTGCTCTGGGAGGTTTTTTATTTCTTATAGTTACTTTATATTTGGTTAAAGCTAAGAATGATGTTCATAGAGCTATTCAAGCTTCTCAACATGACATGGTTGCTGTAATAAGCGGACAAGAAATTGAGGTTCCTGCAACCCCATCATCTACTCATAATGAAGTGTTCACTTGATCAAATATATTCATTATTAATTGTTTATATATATATACTTATACGTCTATTCAACTTTATACTGCTCTTATTATCTCTTGATATTAAATTATTTTATTTCCGTTTCCATCGTTNTGTATTATAAAAAGT AGCTAATAGCANACAGATAGAATTNTGATACATTGAAAGGTCAGCAT ] [-] EMBL CD075869 [ AACTTTATACTGCTCTTATTATCTCTTGATATTAAATTATTTTATTTCCGTTTCCATCGTTTTGTATTAT AAAAGTAAGCTAATAGCAAACAGATAGAATTTTGATACATTGAAAGGTCAGCATTTGTTTTCTTTATAGTTACATTTGTTACTCTAACAGGTTGTCTATCTATCTATCTATGTCATCAAGGCAGTAGATTTTGTGTCTTGTTGAACTAATATTCTTATTGTTAGATTTGTGAATTACTTGTTCTCTTTTTTTAAGTATCATTATTACCTTTTATTCTCTTTACTATTAATACAGAAATCGTACTGTTCTATGTATATTCAATTTAATAATACTTAAATGATTAAATCATCATTGTATTTGTAATAGGGGTAATTTCAACAATATTTGAAGATAAAACATCAGTCAATCATTATTGTGTAAAATGTTCGGTTTTAATGGGGATCTCTTCTCTGTATATGTTTTCTTTTCACTTATATTTCAAAAAAATAATTTTAATATGTGAACTATTGGGTTTATCAGATCATAATAATT] consensusID : consensus_4110#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 206 fasta sequence [CGCAGGCAGAAATTCGGCACGAGGGCTATTCAAGCTTCTCAACATGACATGGTTGCTGTAATAAGCGGACAAGAAATTGAGGTTCCTGCAACCCCATCATCTACTCATAATGAAGTGTTCACTTGATCAAATATATTCATTATTAATTGTTTATATATATATACTTATACGTCTATTCAACTTTATACTGCTCTTATTATCTCTTG] [+] EMBL CD078123 [CGCAGGCAGAAATTCGGCACGAGGGCTATTCAAGCTTCTCAACATGACATGGTTGCTGTAATAAGCGGACAAGAAATTGAGGTTCCTGCAACCCCATCATCTACTCATAATGAAGTGTTCACTTGATCAAATATATTCATTATTAATTGTTTATATATATATACTTATACGTCTATTCAACTTTATACTGCTCTTATTATCTCTTG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_4110#0 ACGAGGACGAATTTCTACGTATGCATTGTTCTTGTTTTCATTCGTCGAATTTCTTCTATG 60 consensus_4110#1 ------------------------------------------------------------ consensus_4110#0 CATCACATGGGCACTTGTGACTGATATGACTATGGGAGTAGTTATTCCTACTCGCCGTTC 120 consensus_4110#1 ------------------------------------------------------------ consensus_4110#0 GACAGCATCTGCGCTTCAAATGGTTATGAGTCATGCACTAGGGGATGCCATCAGTCCGGC 180 consensus_4110#1 ------------------------------------------------------------ consensus_4110#0 TATCGTTGGTCGGATTGCAGTAGCTCTTACAGATCTGCATTCATTAGAAACACAATATTT 240 consensus_4110#1 ------------------------------------------------------------ consensus_4110#0 AGGCTTACAAAGAGCATTATTTCTTACTGCGTTTGTTTGTGCTCTGGGAGGTTTTTTATT 300 consensus_4110#1 ------------------------------------------------------------ consensus_4110#0 TCTTATAGTTACTTTATATTTGGTTAAAGCTAAGAATGATGTTCATAGAGCTATTCAAGC 360 consensus_4110#1 ------------------------CGCAGGCAGAAATTCGGCACG-AGGGCTATTCAAGC 35 ** * *** * * ** *********** consensus_4110#0 TTCTCAACATGACATGGTTGCTGTAATAAGCGGACAAGAAATTGAGGTTCCTGCAACCCC 420 consensus_4110#1 TTCTCAACATGACATGGTTGCTGTAATAAGCGGACAAGAAATTGAGGTTCCTGCAACCCC 95 ************************************************************ consensus_4110#0 ATCATCTACTCATAATGAAGTGTTCACTTGATCAAATATATTCATTATTAATTGTTTATA 480 consensus_4110#1 ATCATCTACTCATAATGAAGTGTTCACTTGATCAAATATATTCATTATTAATTGTTTATA 155 ************************************************************ consensus_4110#0 TATATATACTTATACGTCTATTCAACTTTATACTGCTCTTATTATCTCTTGATATTAAAT 540 consensus_4110#1 TATATATACTTATACGTCTATTCAACTTTATACTGCTCTTATTATCTCTTG--------- 206 *************************************************** consensus_4110#0 TATTTTATTTCCGTTTCCATCGTTNTGTATTATAAAAAGTAGCTAATAGCANACAGATAG 600 consensus_4110#1 ------------------------------------------------------------ consensus_4110#0 AATTNTGATACATTGAAAGGTCAGCATTTGTTTTCTTTATAGTTACATTTGTTACTCTAA 660 consensus_4110#1 ------------------------------------------------------------ consensus_4110#0 CAGGTTGTCTATCTATCTATCTATGTCATCAAGGCAGTAGATTTTGTGTCTTGTTGAACT 720 consensus_4110#1 ------------------------------------------------------------ consensus_4110#0 AATATTCTTATTGTTAGATTTGTGAATTACTTGTTCTCTTTTTTTAAGTATCATTATTAC 780 consensus_4110#1 ------------------------------------------------------------ consensus_4110#0 CTTTTATTCTCTTTACTATTAATACAGAAATCGTACTGTTCTATGTATATTCAATTTAAT 840 consensus_4110#1 ------------------------------------------------------------ consensus_4110#0 AATACTTAAATGATTAAATCATCATTGTATTTGTAATAGGGGTAATTTCAACAATATTTG 900 consensus_4110#1 ------------------------------------------------------------ consensus_4110#0 AAGATAAAACATCAGTCAATCATTATTGTGTAAAATGTTCGGTTTTAATGGGGATCTCTT 960 consensus_4110#1 ------------------------------------------------------------ consensus_4110#0 CTCTGTATATGTTTTCTTTTCACTTATATTTCAAAAAAATAATTTTAATATGTGAACTAT 1020 consensus_4110#1 ------------------------------------------------------------ consensus_4110#0 TGGGTTTATCAGATCATAATAATT 1044 consensus_4110#1 ------------------------ |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||