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These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_4111#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 749 fasta sequence
[TTACAATCTCATTTAATAGTAATGTACAAGTGTTATATTATATATACTTTATAATAGTAACAGTGTACACATATATAGAGAAATATATTTAGTCACAGTGTATACAGTATTAACCCATTTGTTAACTGTTAAGCACAGTTTATATTATGCATCTATCATTAATTGGCCGTTGCCTTTTCCTTTTTTGTTTATTTTGATAAGCATATTCAAGTGAAAACCAAAAAGCATGAGAAAATTGATACAAGAAAAATGTGAAAACATGTATTTTTATAAATATTGTATAGTCGCGTTTGTTTGTTTTGTTTTTTGAGAAAAAAATATTTTAAATACAGAATAAACCATAGATCGTTGATTAGTGTACTTATTTGTGTGCTCGGATGGGGAGGTGTATATTTTTTTATTGTATATGCAAAATAATGCTCTAACAGTGATATTCCTTAAAAATGTTGGGTTGTTAGAAACCGTAAATATCATTAGTGAGTACAAACAAAATGCTGTTCCAGAAGAGAAGTTGTAGGATTATTCCAAAAAATATCAAGTGATAATCTTTACATGTCTAGACAGTGTGAATTAGTAGTGTATATCCAAATTAACTAACTTCCAACTGGATAGTCATGATGATGTTGGAACTAATGATTGACTTGGTGATGATGGTCGAAAATTAAGCAGTTGTTTGCCAACTAAATATTTTTCATCTTTAATATGCAAATAAAGACGTCGGATTTGATCGATGCACAGAGTCAATAACA]
[+] EMBL CD074986 [TTACAATCTCATTTAATAGTAATGTACAAGTGTTATATTATATATACTTTATAATAGTAACAGTGTACACATATATAGAGAAATATATTTAGTCACAGTGTATACAGTATTAACCCATTTGTTAACTGTTAAGCACAGTTTATATTATGCATCTATCATTAATTGGCCGTTGCCTTTTCCTTTTTTGTTTATTTTGATAAGCATATTCAAGTGAAAACCAAAAAGCATGAGAAAATTGATACAAGAAAAATGTGAAAACATGTATTTTTATAAATATTGTATAGTCGCGTTTGTTTGTTTTGTTTTTTGAGAAAAAAATATTTTAAATACAGAATAAACCATAGATCGTTGATTAGTGTACTTATTTGTGTGCTCGGATGGGGAGGTGTATATTTTTTTATTGTATATGCAAAATAATGCTCTAACAGTGATATTCCTTAAAAATGTTGGGTTGTTAGAAACCGTAAATATCATTAGTGAGTACAAACAAAATGCTGTTCCAGAAGAGAAGTTGTAGGATTATTCCAAAAAATATCAAGTGATAATCTTTACATGTCTAGACAGTGTGAATTAGTAGTGTATATCCAAATTAACTAACTTCCAACTGGATAGTCATGATGATGTTGGAACTAATGATTGACTTGGTGATGATGGTCGAAAATTAAGCAGTTGTTTGCCAACTAAATATTTTTCATCTTTAATATGCAAATAAAGACGTCGGATTTGATCGATGCACAGAGTCAATAACA]
[+] EMBL CD200905 [ ATTTTTTTATGGTATATGCAAAATAATGCTCTAACAGTGATATTCCTTAAAAATGTTGGGTTGTTAGAAACCGTTTTTTTCATTAGTGAGTACAGACAAAATGCTGTTCCAGAAGAGAAGTTGTAGGATTATTCCAAAAAATATCAAGTGATAATCTTTACATGTCTAGACAGTGTGAATTAGTAGTGTATATCCAAATTAACTAACTTCCAACTGGATAGTCATGATGATGTTGGAACTAATGATTGACTTGGTGATGATGGTCGAAAATTAAGCAGTTGTTTGCCAACTAAATATTTTTCATCTTTAATATGCAAATAAAGACGTCGGATTTGATCGGTGCACAGAGTCAAT ]
consensusID : consensus_4111#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 438 fasta sequence
[CCATAAAAGTTNTTANCCAATGGAAAAAGCGTCGAATTGAAAAGTCATCANCTAAGAGTCGACCAACAATACGTCGTCGTAAAGCGTTGGAGAGTTCTGTACCTTTGGATAATTTAATAACATTGAGTTTTGATGAAAATACCAATCGAGTGGACAGTAATGCATGTAGTGATGAGAAAACTGATTTGAAAGTCAACCTAACATCACGTCGCTTTGTAAACTGGTGTCCAGGAACCACATTTCATTCGTGTTTCAGATCCAGCAGAAGATGAAGCTGTCAAGATTCTTATGAATAAGCATATTCAAGTGAAAACCAAAAAGCATGAGAAAATTGATACAAGAAAAATGTGAAAACATGTATTTTTATAAATATTGTATAGTCGCGTTTGTTTGTTTTGTTTTTTGAGAAAAAAATATTTTAAATACAGAATAAACCAT]
[-] EMBL AI026208 [CCATAAAAGTTNTTANCCAATGGAAAAAGCGTCGAATTGAAAAGTCATCANCTAAGAGTCGACCAACAATACGTCGTCGTAAAGCGTTGGAGAGTTCTGTACCTTTGGATAATTTAATAACATTGAGTTTTGATGAAAATACCAATCGAGTGGACAGTAATGCATGTAGTGATGAGAAAACTGATTTGAAAGTCAACCTAACATCACGTCGCTTTGTAAACTGGTGTCCAGGAACCACATTTCATTCGTGTTTCAGATCCAGCAGAAGATGAAGCTGTCAAGATTCTTATGAATAAGCATATTCAAGTGAAAACCAAAAAGCATGAGAAAATTGATACAAGAAAAATGTGAAAACATGTATTTTTATAAATATTGTATAGTCGCGTTTGTTTGTTTTGTTTTTTGAGAAAAAAATATTTTAAATACAGAATAAACCAT]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_4111#0 ------------------------------------------------------------
consensus_4111#1 CCATAAAAGTTNTTANCCAATGGAAAAAGCGTCGAATTGAAAAGTCATCANCTAAGAGTC 60
consensus_4111#0 ---------------------------------TTACAATCTCATTTAATAGTAATGTAC 27
consensus_4111#1 GACCAACAATACGTCGTCGTAAAGCGTTGGAGAGTTCTGTACCTTTGGATAATTTAATAA 120
* * * * ** *** * **
consensus_4111#0 AAGTGTTATATTATATATACTTTATAATAGTA-ACAGTGTACACATATATAGAGAAATAT 86
consensus_4111#1 CATTGAGTTTTGATGAAAATACCAATCGAGTGGACAGTA-ATGCATGTAGTGATGAGAAA 179
* ** * * ** * * * *** ***** * *** ** ** * *
consensus_4111#0 ATTTAGTC-ACAGTGTATACAGTATTAACCCA-TTTGTTAACTGTTAAGCACAGTTTATA 144
consensus_4111#1 ACTGATTTGAAAGTCAACCTAACATCACGTCGCTTTGTAAACTGGTGTCCAGGAACCACA 239
* * * * * *** * * ** * * ***** ***** * ** * *
consensus_4111#0 TTATGCATCTATCATTAATTGGCCGTTGCCTTTTCCTTTTTTGTTTATTTTGA-TAAGCA 203
consensus_4111#1 TTTCATTCGTGTTTCAGATCCAGCAGAAGATGAAGCTGTCAAGATTCTTATGAATAAGCA 299
** * * ** * * ** * * ** ** *** ******
consensus_4111#0 TATTCAAGTGAAAACCAAAAAGCATGAGAAAATTGATACAAGAAAAATGTGAAAACATGT 263
consensus_4111#1 TATTCAAGTGAAAACCAAAAAGCATGAGAAAATTGATACAAGAAAAATGTGAAAACATGT 359
************************************************************
consensus_4111#0 ATTTTTATAAATATTGTATAGTCGCGTTTGTTTGTTTTGTTTTTTGAGAAAAAAATATTT 323
consensus_4111#1 ATTTTTATAAATATTGTATAGTCGCGTTTGTTTGTTTTGTTTTTTGAGAAAAAAATATTT 419
************************************************************
consensus_4111#0 TAAATACAGAATAAACCATAGATCGTTGATTAGTGTACTTATTTGTGTGCTCGGATGGGG 383
consensus_4111#1 TAAATACAGAATAAACCAT----------------------------------------- 438
*******************
consensus_4111#0 AGGTGTATATTTTTTTATTGTATATGCAAAATAATGCTCTAACAGTGATATTCCTTAAAA 443
consensus_4111#1 ------------------------------------------------------------
consensus_4111#0 ATGTTGGGTTGTTAGAAACCGTAAATATCATTAGTGAGTACAAACAAAATGCTGTTCCAG 503
consensus_4111#1 ------------------------------------------------------------
consensus_4111#0 AAGAGAAGTTGTAGGATTATTCCAAAAAATATCAAGTGATAATCTTTACATGTCTAGACA 563
consensus_4111#1 ------------------------------------------------------------
consensus_4111#0 GTGTGAATTAGTAGTGTATATCCAAATTAACTAACTTCCAACTGGATAGTCATGATGATG 623
consensus_4111#1 ------------------------------------------------------------
consensus_4111#0 TTGGAACTAATGATTGACTTGGTGATGATGGTCGAAAATTAAGCAGTTGTTTGCCAACTA 683
consensus_4111#1 ------------------------------------------------------------
consensus_4111#0 AATATTTTTCATCTTTAATATGCAAATAAAGACGTCGGATTTGATCGATGCACAGAGTCA 743
consensus_4111#1 ------------------------------------------------------------
consensus_4111#0 ATAACA 749
consensus_4111#1 ------
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| Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||