cluster # 4112

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Schistosoma mansoni
cluster # 4112 cluster # 4112 Sequences # 3 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_4112#0 length = 871 sequences # 2

consensus_4112#1 length = 597 sequences # 1

consensusID : consensus_4112#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 871
fasta sequence

                              [CTTCGGGGCCAAAATTCGGCACGAGGCGTATAACTAAATCGCAATTATATTACTTCTAAAGTTATTCATTTTATGATATACTTGTAACTAAAGTTTTCTTAATGTCCTCTCTTTTATTAATCTTTTTGTTTAGAAACAGATTAAACCATCTGCGGAAGTTTGTACGTATAACATAAATTGCCATGAGTACTGTTTACCTTTTCGACCAAATACTCTAGATTTAGTTTTAAGCTCTATGAGCTTACACTGGATAAACGATCTACCTGGTTTATTAAAACAAGTGTGATGCCAGCAATGGATACATTGTATGAATTGCGTGTATCATTACAATTAGCTGAATTAGAAAGATTAGGCGGAATCTCATCGCATATTAGTCCATTCGTGGATAGTGTAGATATGGCTAATTTGTTGCAATCTGCTGGATTCAATTTAATCACATTAGATATCGATGAAATTGTCATTCATTATCCAGATATATTTGCATTAATGAATGATCTACGATTTATGGGTGAATCCAATGCTACTGTTCATAGACCATTACGTTTGAATCGTGATGTTTTATTTGCAGCCTCTGCAATTTACAATGAGAAATTCAGTGTTCCTCGTGAAGGTGAAG-AAATGAACGCTGTATTCCGGCAACCTATCGGCTGTTATATTTTATTGGATGGAAACCTGATCCTTCTCAAGTAAACCACCATTGTTCGTTATGTGTTGACTGAAGTATTTTTAAACTGTTGAATCCTAGTCGAATACCAAGGAATACATCTTAATGAATCCAAGTCAAACTGTATCTTAAGGTACTCCAAGTCCCTACTAATTGTGAATATATGATTAATTATTCAGTGAAGTGGTGATATCCTCCCCTGTATGC]

[+] EMBL CD081845             [CTTCGGGGCCAAAATTCGGCACGAGGCGTATAACTAAATCGCAATTATATTACTTCTAAAGTTATTCATTTTATGATATACTTGTAACTAAAGTTTTCTTAATGTCCTCTCTTTTATTAATCTTTTTGTTTAGAAACAGATTAAACCATCTGCGGAAGTTTGTACGTATAACATAAATTGCCATGAGTACTGTTTACCTTTTCGACCAAATACTCTAGATTTAGTTTTAAGCTCTATGAGCTTACACTGGATAAACGATCTACCTGGTTTATTAAAACAAGTGTGATGCCAGCAATGGATACATTGTATGAATTGCGTGTATCATTACAATTAGCTGAATTAGAAAGATTAGGCGGAATCTCATCGCATATTAGTCCATTCGTGGATAGTGTAGATATGGCTAATTTGTTGCAATCTGCTGGATTCAATTTAATCACATTAGATATCGATGAAATTGTCATTCATTATCCAGATATATTTGCATTAATGAATGATCTACGATTTATGGGTGAATCCAATGCTACTGTTCATAGACCATTACGTTTGAATCGTGATGTTTTATTTGCAGCCTCTGCAATTTACAATGAGAAATTCAGTGTTCCTCGTGAAGGTGAAG AAATGAACGCTGTATTCCGGCAACCTATCGGCTGTTATATTTTATTGGATGGAAACCTGATCCTTCTCAAGTAAACC                                                                                                                                                                                  ]
[+] EMBL CD177826             [                                                                                                                                                                                                                                                                                                                     tggaaggGTGTATCATTACAATTACCTGAATTAAAAAGATTAGGCGGAATCTCATCGCATATTAGTCCATTCGTGGATAGTGTAAATATGGCTAATTTGTTGCAATCTGCTGGATTCAATTTAATCACATTAGATATCGATGAAATTGTCATTCATTATCCAGATATATTTGCATTAATGAATGATCTACGATTTATGGGTGAATCCAATGCTACTGTTCATAGACCATTACGTTTGAATCGTGATGTTTTATTTGCAGCCTCTGCAATTTACAATGAGAAATTCAGTGTTCCTCGTGAAGGTGAAGAAAATGAACGCTGTATTCCGGCAACCTATCGGCTGCAATATTTTATTGGATGGAAACCTGATCCTTCTCAAGTAAGTGACCATTGTTCGTTATGTGTTGACTGAAGTATTTTTAAACTGTTGAATCCTAGTCGAATACCAAGGAATACATCTTAATGAATCCAAGTCAAACTGTATCTTAAGGTACTCCAAGTCCCTACTAATTGTGAATATATGATTAATTATTCAGTGAAGTGGTGATATCCTCCCCTGTATGC]




>consensus_4112#0
CTTCGGGGCCAAAATTCGGCACGAGGCGTATAACTAAATCGCAATTATATTACTTCTAAA
GTTATTCATTTTATGATATACTTGTAACTAAAGTTTTCTTAATGTCCTCTCTTTTATTAA
TCTTTTTGTTTAGAAACAGATTAAACCATCTGCGGAAGTTTGTACGTATAACATAAATTG
CCATGAGTACTGTTTACCTTTTCGACCAAATACTCTAGATTTAGTTTTAAGCTCTATGAG
CTTACACTGGATAAACGATCTACCTGGTTTATTAAAACAAGTGTGATGCCAGCAATGGAT
ACATTGTATGAATTGCGTGTATCATTACAATTAGCTGAATTAGAAAGATTAGGCGGAATC
TCATCGCATATTAGTCCATTCGTGGATAGTGTAGATATGGCTAATTTGTTGCAATCTGCT
GGATTCAATTTAATCACATTAGATATCGATGAAATTGTCATTCATTATCCAGATATATTT
GCATTAATGAATGATCTACGATTTATGGGTGAATCCAATGCTACTGTTCATAGACCATTA
CGTTTGAATCGTGATGTTTTATTTGCAGCCTCTGCAATTTACAATGAGAAATTCAGTGTT
CCTCGTGAAGGTGAAGAAATGAACGCTGTATTCCGGCAACCTATCGGCTGTTATATTTTA
TTGGATGGAAACCTGATCCTTCTCAAGTAAACCACCATTGTTCGTTATGTGTTGACTGAA
GTATTTTTAAACTGTTGAATCCTAGTCGAATACCAAGGAATACATCTTAATGAATCCAAG
TCAAACTGTATCTTAAGGTACTCCAAGTCCCTACTAATTGTGAATATATGATTAATTATT
CAGTGAAGTGGTGATATCCTCCCCTGTATGC

consensusID : consensus_4112#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 597
fasta sequence

                              [TATCTCAGTTTATCACATCAGATAATATCGGGGTTCTCTACCAACTAGACAGTTCATCTGAGGTCTTAAAACAGATTGAACCATCTGCGGAAGTTTGTACGTATAACATAAATTGCCATGAGTACTGTTTACCTTTTCGACCAAATACTCTAGATTTAGTTTTAAGCTCTATGAGCTTACACTGGATAAACGATCTACCTGGTTTATTAAAACAAATATTAACTTGTTTGCGTAATGATGGATGCTTATTAGGTGTGATGCCAGCAATGGATACATTGTATGAATTGCGTGTATCATTACAATTAGCTGAATTAGAAAGATTAGGCGGAATCTCATCGCATATTAGTCCATTCGTGGATAGTGTAGATATGGCTAATTTGTTGCAATCTGCTGGATTCAATTTAATCACATTAGATATCGATGAAATTGTCATTCATTATCCAGATATATTTGCATTAATGAATGATCTACGATTTATGGGTGAATCCAATGCTACTGTTCATAGACCATTACGTTTGAATCGTGATGTTTTATTTGCAGCCTCTGCAATTTACAATGAGAAATTCAGTGTTCCTCGTGAAGGTGAAGAAAATGAAC]

[-] EMBL CD126343             [TATCTCAGTTTATCACATCAGATAATATCGGGGTTCTCTACCAACTAGACAGTTCATCTGAGGTCTTAAAACAGATTGAACCATCTGCGGAAGTTTGTACGTATAACATAAATTGCCATGAGTACTGTTTACCTTTTCGACCAAATACTCTAGATTTAGTTTTAAGCTCTATGAGCTTACACTGGATAAACGATCTACCTGGTTTATTAAAACAAATATTAACTTGTTTGCGTAATGATGGATGCTTATTAGGTGTGATGCCAGCAATGGATACATTGTATGAATTGCGTGTATCATTACAATTAGCTGAATTAGAAAGATTAGGCGGAATCTCATCGCATATTAGTCCATTCGTGGATAGTGTAGATATGGCTAATTTGTTGCAATCTGCTGGATTCAATTTAATCACATTAGATATCGATGAAATTGTCATTCATTATCCAGATATATTTGCATTAATGAATGATCTACGATTTATGGGTGAATCCAATGCTACTGTTCATAGACCATTACGTTTGAATCGTGATGTTTTATTTGCAGCCTCTGCAATTTACAATGAGAAATTCAGTGTTCCTCGTGAAGGTGAAGAAAATGAAC]




>consensus_4112#1
TATCTCAGTTTATCACATCAGATAATATCGGGGTTCTCTACCAACTAGACAGTTCATCTG
AGGTCTTAAAACAGATTGAACCATCTGCGGAAGTTTGTACGTATAACATAAATTGCCATG
AGTACTGTTTACCTTTTCGACCAAATACTCTAGATTTAGTTTTAAGCTCTATGAGCTTAC
ACTGGATAAACGATCTACCTGGTTTATTAAAACAAATATTAACTTGTTTGCGTAATGATG
GATGCTTATTAGGTGTGATGCCAGCAATGGATACATTGTATGAATTGCGTGTATCATTAC
AATTAGCTGAATTAGAAAGATTAGGCGGAATCTCATCGCATATTAGTCCATTCGTGGATA
GTGTAGATATGGCTAATTTGTTGCAATCTGCTGGATTCAATTTAATCACATTAGATATCG
ATGAAATTGTCATTCATTATCCAGATATATTTGCATTAATGAATGATCTACGATTTATGG
GTGAATCCAATGCTACTGTTCATAGACCATTACGTTTGAATCGTGATGTTTTATTTGCAG
CCTCTGCAATTTACAATGAGAAATTCAGTGTTCCTCGTGAAGGTGAAGAAAATGAAC

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_4112#0      CTTCGGGGCCAAAATTCGGCACGAGGCGTATAACTAAATCGCAATTATATTACTTCTAAA 60
consensus_4112#1      ------------------------------------------------------------
                                                                                  

consensus_4112#0      GTTATTCATTTTATGATATACTTGTAACTAAAGTTTTCTTAATGTCCTCTCTTTTATTAA 120
consensus_4112#1      -TATCTCAGTTTATCACAT-CAGATAATATCGGGGTTCTC--TACCAACTAGACAGTTCA 56
                       *   *** ***** * ** *   ***     *  ****   *  *  **      ** *

consensus_4112#0      TCTTTTTGTTTAGAAACAGATTAAACCATCTGCGGAAGTTTGTACGTATAACATAAATTG 180
consensus_4112#1      TCTGAG-GTCTTAAAACAGATTGAACCATCTGCGGAAGTTTGTACGTATAACATAAATTG 115
                      ***    ** *  ********* *************************************

consensus_4112#0      CCATGAGTACTGTTTACCTTTTCGACCAAATACTCTAGATTTAGTTTTAAGCTCTATGAG 240
consensus_4112#1      CCATGAGTACTGTTTACCTTTTCGACCAAATACTCTAGATTTAGTTTTAAGCTCTATGAG 175
                      ************************************************************

consensus_4112#0      CTTACACTGGATAAACGATCTACCTGGTTTATTAAAACAA-------------------- 280
consensus_4112#1      CTTACACTGGATAAACGATCTACCTGGTTTATTAAAACAAATATTAACTTGTTTGCGTAA 235
                      ****************************************                    

consensus_4112#0      -----------------GTGTGATGCCAGCAATGGATACATTGTATGAATTGCGTGTATC 323
consensus_4112#1      TGATGGATGCTTATTAGGTGTGATGCCAGCAATGGATACATTGTATGAATTGCGTGTATC 295
                                       *******************************************

consensus_4112#0      ATTACAATTAGCTGAATTAGAAAGATTAGGCGGAATCTCATCGCATATTAGTCCATTCGT 383
consensus_4112#1      ATTACAATTAGCTGAATTAGAAAGATTAGGCGGAATCTCATCGCATATTAGTCCATTCGT 355
                      ************************************************************

consensus_4112#0      GGATAGTGTAGATATGGCTAATTTGTTGCAATCTGCTGGATTCAATTTAATCACATTAGA 443
consensus_4112#1      GGATAGTGTAGATATGGCTAATTTGTTGCAATCTGCTGGATTCAATTTAATCACATTAGA 415
                      ************************************************************

consensus_4112#0      TATCGATGAAATTGTCATTCATTATCCAGATATATTTGCATTAATGAATGATCTACGATT 503
consensus_4112#1      TATCGATGAAATTGTCATTCATTATCCAGATATATTTGCATTAATGAATGATCTACGATT 475
                      ************************************************************

consensus_4112#0      TATGGGTGAATCCAATGCTACTGTTCATAGACCATTACGTTTGAATCGTGATGTTTTATT 563
consensus_4112#1      TATGGGTGAATCCAATGCTACTGTTCATAGACCATTACGTTTGAATCGTGATGTTTTATT 535
                      ************************************************************

consensus_4112#0      TGCAGCCTCTGCAATTTACAATGAGAAATTCAGTGTTCCTCGTGAAGGTGAAGAAA-TGA 622
consensus_4112#1      TGCAGCCTCTGCAATTTACAATGAGAAATTCAGTGTTCCTCGTGAAGGTGAAGAAAATGA 595
                      ******************************************************** ***

consensus_4112#0      ACGCTGTATTCCGGCAACCTATCGGCTGTTATATTTTATTGGATGGAAACCTGATCCTTC 682
consensus_4112#1      AC---------------------------------------------------------- 597
                      **                                                          

consensus_4112#0      TCAAGTAAACCACCATTGTTCGTTATGTGTTGACTGAAGTATTTTTAAACTGTTGAATCC 742
consensus_4112#1      ------------------------------------------------------------
                                                                                  

consensus_4112#0      TAGTCGAATACCAAGGAATACATCTTAATGAATCCAAGTCAAACTGTATCTTAAGGTACT 802
consensus_4112#1      ------------------------------------------------------------
                                                                                  

consensus_4112#0      CCAAGTCCCTACTAATTGTGAATATATGATTAATTATTCAGTGAAGTGGTGATATCCTCC 862
consensus_4112#1      ------------------------------------------------------------
                                                                                  

consensus_4112#0      CCTGTATGC 871
consensus_4112#1      ---------