These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_4114#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 1008 fasta sequence [GACAAATTATTAAAAAAAGTTTACAACCGTGGTCGTACTTTTCCTACTGACGTCCTAGCGTACATTGTGTTGTCGGTTGTTGAGGCTCTTGAGTATCTACATCAACTTGAAGTTATACATCGTGATGTAAAACCTTCAAACATGCTTGCAGATTGTCATGGCCGAGTTAAGGTTTGTGATTTTGGAATATCAGCCGATTTAGAAAATTCAATTGCGTTAACCAACATAGGGACAAGAGCTTATTTAGCTCCAGAGCGAATTAATACGCGAGAGAATGAAGGATTTTGTATTCGTTCAGATGTATGGTCACTTGGTCTAAGTGTACTCGAATTAGCAACTGGAAAACCTTGCTATCCTCAATCGCAAAATGTATTTCAGCAATTGGTCCAGGTTGTTCATGAACCATCACCACAATTGCCAGAATCAAGTTGTTATCCGAATTCACTACGTAAATTCATTGATTCATGTCTTATGAAGAACAAGGATGATAGACCGAATTATGTTCAACTATTGGAGTCAGAATTCTTATCAACTGTTGACGCTAAAAGTGGTCAAGAATCATTTAGAATATTTTTAGCAGATTATCTTGATGATAATGAAAAATGTTAATGATTCATTATAANTATCCGTTGTTATTACTGANTATGATGATGTATTAACTTACTTANAAAGTAAGTACATGTATAAATNNTCTCAATCACATCATAAACATCANGTTATATGTAATANGAATTACTTTTTCTCTGCCTGCTTTCATTAACAAAAATTGTTTACCAACCTATATGTGATACATTTCCGTTTTTTTTAATTTCCCAATTNNGAAGAGATTTTCTTACTCCCTAATTNGGCTATCAANGATGAATACAAACCTATCTTTTGGACAAGCCTTGTTGGTTATTGCTTTATCTTGGCACCATATANNNNNNNNNNNNNNNNNNNNNNNNNNNNNTAAAAACCCAATAGGNAAAAATTCCGGGAACGGGCTCGTAACATTAAAATCGGGGGATT] [+] EMBL CD080026 [GACAAATTATTAAAAAAAGTTTACAACCGTGGTCGTACTTTTCCTACTGACGTCCTAGCGTACATTGTGTTGTCGGTTGTTGAGGCTCTTGAGTATCTACATCAACTTGAAGTTATACATCGTGATGTAAAACCTTCAAACATGCTTGCAGATTGTCATGGCCGAGTTAAGGTTTGTGATTTTGGAATATCAGCCGATTTAGAAAATTCAATTGCGTTAACCAACATAGGGACAAGAGCTTATTTAGCTCCAGAGCGAATTAATACGCGAGAGAATGAAGGATTTTGTATTCGTTCAGATGTATGGTCACTTGGTCTAAGTGTACTCGAATTAGCAACTGGAAAACCTTGCTATCCTCAATCGCAAAATGTATTTCAGCAATTGGTCCAGGTTGTTCATGAACCATCACCACAATTGCCAGAATCAAGTTGTTATCCGAATTCACTACGTAAATTCATTGATTCATGTCTTATGAAGAACAAGGATGATAGACCGAATTATGTTCAACTATTGGAGTCAGAATTCTTATCAACTGTTGACGCTAAAAGTGGTCAAGAATCATTTAGAATATTTTTAGCAGATTATCTTGATGATAATGAAAAATGTTAATGATTCATTATAANTATCCGTTGTTATTACTGANTATGATGATGTATTAACTTACTTANAAAGTAAGTACATGTATAAATNNTCTCAATCACATCATAAACATCANGTTATATGTAATANGAATTACTTTTTCTCTGCCTGCTTTCATTAACAAAAATTGTTTACCAACCTATATGTGATACATTTCCGTTTTTTTTAATTTCCCAATTNNGAAGAGATTTTCTTACTCCCTAATTNGGCTATCAANGATGAATACAAACCTATCTTTTGGACAAGCCTTGTTGGTTATTGCTTTATCTTGGCACCATATANNNNNNNNNNNNNNNNNNNNNNNNNNNNNTAAAAACCCAATAGGNAAAAATTCCGGGAACGGGCTCGTAACATTAAAATCGGGGGATT] [-] EMBL CD165084 [ AAGTTATACATCGTGATGTAAAACCTTCAAACATGCTTGCAGATTGTCATGGCCGAGTTAAGGTTTGTGATTTTGGAATATCAGCCGATTTAGAAAATTCAATTGCGTTAACCAACATAGGGACAAGAGCTTATTTAGCTCCAGAGCGAATTAATACGCGAGAGAATGAAGGATTTTGTATTCGTTCAGAAGTATGGTCACTTGGTCTAAGTGTGCTCGAAATAGCAACTGGAAAACCTTGCTATCCTCAATCGCAAAATGTA ] consensusID : consensus_4114#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 775 fasta sequence [GCCAGAATCAAGTTGTTATCCGAATTCACTACGTAAATTCATGNATTCATGTCTTATGAAGAACAAGGATGATAGACCGAATTATGTTCAACTATTGGAGTCAGAATTCTTATCAACTGTTGACGCTAAAAGTGGTCAAGAATCATTTAGAATATTTTTAGCAGATTATCTTGATGATAATGAAAAATGTTAATGATTCATTATAATATCCGTTGTTATTACTGATAATGATGATGTATTAACTTACTTAAAAAGTAAGTACATGTATAAATTTTCTCAATCACATCATAAACATCAGGTTATATGTAATAGGAATTACTTTTTCTCTGCCTGCTTTCATTAACAAAAATTGTTTACCAACCTATATGTGATACATTCCGTTTTTTTAATTTCCAAATTTGAAGAGATTTTCTTACTCCTTATTTGTCTATCAGTGATGATTACAAACTAATCTTTTGGACAGCCTTGTTGTTATTGCTTTTATCTTGCCAGCATATATATATATATATATATATATATATATATATATATATATAATTCTCATATATGTATATAATTTCTGTCACTGTTCTCGTTTAACATTAAAATATCAGTGGTAATTTCATCTACCATGTAGTTTTGTCGTTTTATGTTGCTTTTAATTTTGTCTTCCCAATCTTGACTGTTCCTATAAATAATTGGTTTGACCACTACTAGTCAGTAATGATAAACAGATGAAGAAGACATTTTTAATATAGCCATTTTCATTTTCGCGGGATTTTAATAAATTTATTTT] [-] EMBL CD074994 [GCCAGAATCAAGTTGTTATCCGAATTCACTACGTAAATTCATGNATTCATGTCTTATGAAGAACAAGGATGATAGACCGAATTATGTTCAACTATTGGAGTCAGAATTCTTATCAACTGTTGACGCTAAAAGTGGTCAAGAATCATTTAGAATATTTTTAGCAGATTATCTTGATGATAATGAAAAATGTTAATGATTCATTATAATATCCGTTGTTATTACTGATAATGATGATGTATTAACTTACTTAAAAAGTAAGTACATGTATAAATTTTCTCAATCACATCATAAACATCAGGTTATATGTAATAGGAATTACTTTTTCTCTGCCTGCTTTCATTAACAAAAATTGTTTACCAACCTATATGTGATACATTCCGTTTTTTTAATTTCCAAATTTGAAGAGATTTTCTTACTCCTTATTTGTCTATCAGTGATGATTACAAACTAATCTTTTGGACAGCCTTGTTGTTATTGCTTTTATCTTGCCAGCATATATATATATATATATATATATATATATATATATATATATAATTCTCATATATGTATATAATTTCTGTCACTGTTCTCGTTTAACATTAAAATATCAGTGGTAATTTCATCTACCATGTAGTTTTGTCGTTTTATGTTGCTTTTAATTTTGTCTTCCCAATCTTGACTGTTCCTATAAATAATTGGTTTGACCACTACTAGTCAGTAATGATAAACAGATGAAGAAGACATTTTTAATATAGCCATTTTCATTTTCGCGGGATTTTAATAAATTTATTTT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_4114#0 GACAAATTATTAAAAAAAGTTTACAACCGTGGTCGTACTTTTCCTACTGACGTCCTAGCG 60 consensus_4114#1 ------------------------------------------------------------ consensus_4114#0 TACATTGTGTTGTCGGTTGTTGAGGCTCTTGAGTATCTACATCAACTTGAAGTTATACAT 120 consensus_4114#1 ------------------------------------------------------------ consensus_4114#0 CGTGATGTAAAACCTTCAAACATGCTTGCAGATTGTCATGGCCGAGTTAAGGTTTGTGAT 180 consensus_4114#1 ------------------------------------------------------------ consensus_4114#0 TTTGGAATATCAGCCGATTTAGAAAATTCAATTGCGTTAACCAACATAGGGACAAGAGCT 240 consensus_4114#1 ------------------------------------------------------------ consensus_4114#0 TATTTAGCTCCAGAGCGAATTAATACGCGAGAGAATGAAGGATTTTGTATTCGTTCAGAT 300 consensus_4114#1 ------------------------------------------------------------ consensus_4114#0 GTATGGTCACTTGGTCTAAGTGTACTCGAATTAGCAACTGGAAAACCTTGCTATCCTCAA 360 consensus_4114#1 ------------------------------------------------------------ consensus_4114#0 TCGCAAAATGTATTTCAGCAATTGGTCCAGGTTGTTCATGAACCATCACCACAATTGCCA 420 consensus_4114#1 --------------------------------------------------------GCCA 4 **** consensus_4114#0 GAATCAAGTTGTTATCCGAATTCACTACGTAAATTCATTGATTCATGTCTTATGAAGAAC 480 consensus_4114#1 GAATCAAGTTGTTATCCGAATTCACTACGTAAATTCATGNATTCATGTCTTATGAAGAAC 64 ************************************** ******************** consensus_4114#0 AAGGATGATAGACCGAATTATGTTCAACTATTGGAGTCAGAATTCTTATCAACTGTTGAC 540 consensus_4114#1 AAGGATGATAGACCGAATTATGTTCAACTATTGGAGTCAGAATTCTTATCAACTGTTGAC 124 ************************************************************ consensus_4114#0 GCTAAAAGTGGTCAAGAATCATTTAGAATATTTTTAGCAGATTATCTTGATGATAATGAA 600 consensus_4114#1 GCTAAAAGTGGTCAAGAATCATTTAGAATATTTTTAGCAGATTATCTTGATGATAATGAA 184 ************************************************************ consensus_4114#0 AAATGTTAATGATTCATTATAANTATCCGTTGTTATTACTGANTATGATGATGTATTAAC 660 consensus_4114#1 AAATGTTAATGATTCATTATAAT-ATCCGTTGTTATTACTGATAATGATGATGTATTAAC 243 ********************** ****************** **************** consensus_4114#0 TTACTTANAAAGTAAGTACATGTATAAATNNTCTCAATCACATCATAAACATCANGTTAT 720 consensus_4114#1 TTACTTAAAAAGTAAGTACATGTATAAATTTTCTCAATCACATCATAAACATCAGGTTAT 303 ******* ********************* *********************** ***** consensus_4114#0 ATGTAATANGAATTACTTTTTCTCTGCCTGCTTTCATTAACAAAAATTGTTTACCAACCT 780 consensus_4114#1 ATGTAATAGGAATTACTTTTTCTCTGCCTGCTTTCATTAACAAAAATTGTTTACCAACCT 363 ******** *************************************************** consensus_4114#0 ATATGTGATACATTTCCGTTTTTTTTAATTTCCCAATTNNGAAGAGATTTTCTTACTCCC 840 consensus_4114#1 ATATGTGATACATTCCG--TTTTTTTAATTTCCAAATTTG-AAGAGATTTTCTTACTCCT 420 ************** * ************** **** ****************** consensus_4114#0 TAATTNGGCTATCAANGATGAATACAAACCTATCTTTTGGACAAGCCTTGTTGGTTATTG 900 consensus_4114#1 TA-TTTGTCTATCAGTGATGATTACAAACTAATCTTTTGGACA-GCCTTGTTG-TTATTG 477 ** ** * ****** ***** ******* ************ ********* ****** consensus_4114#0 CTTT-ATCTTGGCACCATATANNNNNNNNNNNNNNNNNNNNNNNNNNNNN-----TAAAA 954 consensus_4114#1 CTTTTATCTTGCCAGCATATATATATATATATATATATATATATATATATATATATATAA 537 **** ****** ** ****** ** ** consensus_4114#0 ACCCAATAGGN----AAAAATTCCGGGAACGGGCTCGT--AACATTAAAATCGGGGGATT 1008 consensus_4114#1 TTCTCATATATGTATATAATTTCTGTCACTGTTCTCGTTTAACATTAAAATATCAGTGGT 597 * *** * ** *** * * * ***** *********** * * consensus_4114#0 ------------------------------------------------------------ consensus_4114#1 AATTTCATCTACCATGTAGTTTTGTCGTTTTATGTTGCTTTTAATTTTGTCTTCCCAATC 657 consensus_4114#0 ------------------------------------------------------------ consensus_4114#1 TTGACTGTTCCTATAAATAATTGGTTTGACCACTACTAGTCAGTAATGATAAACAGATGA 717 consensus_4114#0 ---------------------------------------------------------- consensus_4114#1 AGAAGACATTTTTAATATAGCCATTTTCATTTTCGCGGGATTTTAATAAATTTATTTT 775 |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||