cluster # 412

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Schistosoma mansoni
cluster # 412 cluster # 412 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_412#0 length = 594 sequences # 1

consensus_412#1 length = 525 sequences # 1

consensusID : consensus_412#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 594
fasta sequence

                              [TTGGGACTCGTCAGCTGGATGTACCTGCATCTCAGAGTTGATGTTCACTCTGAGACTCGAAAATCATTATTATTTTTTTTATCTTATCCAAATGTTTGATTTACTTTCTTCACGTTTACGTTATTTAAATATGAGAAAACAATATTTGCACTAATCGGTCACGAAGTAGTACGTTTTCACTGTTATTTTTGTCTATTCTTTTGTGATTAATTAAGCTACAATATGACCTATAGATTTAGTGACTTAACATTGTAGAACACTGTTTGACGTCAAATTGTTGTTGGTAAGTGCCAAAAGGTTCTAAATTTTGTTAGCTTACTAGCTGATAATTCACAGTAAAATGTATCTAAAATTTTGAACAATCTGAATCTTTCAGTTGGTGAAAAACTAATTCAACTTAATATCACAGTCAGAAGCGTTACCGCTGAGCTATTCATGCCTCAACTAAACTTTTGTAGAATATAAATAATAACACTTATTCAATGAAACATGATCGTAAAAGACTGAATAAAGTTTTTTACTAGGTCGAACAACGCAGTTAGCAATGACACCGTGAGGGTTAGTCGTTTCTGGTTTTCGATACTTAAGACTGTA]

[+] EMBL CD088602             [TTGGGACTCGTCAGCTGGATGTACCTGCATCTCAGAGTTGATGTTCACTCTGAGACTCGAAAATCATTATTATTTTTTTTATCTTATCCAAATGTTTGATTTACTTTCTTCACGTTTACGTTATTTAAATATGAGAAAACAATATTTGCACTAATCGGTCACGAAGTAGTACGTTTTCACTGTTATTTTTGTCTATTCTTTTGTGATTAATTAAGCTACAATATGACCTATAGATTTAGTGACTTAACATTGTAGAACACTGTTTGACGTCAAATTGTTGTTGGTAAGTGCCAAAAGGTTCTAAATTTTGTTAGCTTACTAGCTGATAATTCACAGTAAAATGTATCTAAAATTTTGAACAATCTGAATCTTTCAGTTGGTGAAAAACTAATTCAACTTAATATCACAGTCAGAAGCGTTACCGCTGAGCTATTCATGCCTCAACTAAACTTTTGTAGAATATAAATAATAACACTTATTCAATGAAACATGATCGTAAAAGACTGAATAAAGTTTTTTACTAGGTCGAACAACGCAGTTAGCAATGACACCGTGAGGGTTAGTCGTTTCTGGTTTTCGATACTTAAGACTGTA]




>consensus_412#0
TTGGGACTCGTCAGCTGGATGTACCTGCATCTCAGAGTTGATGTTCACTCTGAGACTCGA
AAATCATTATTATTTTTTTTATCTTATCCAAATGTTTGATTTACTTTCTTCACGTTTACG
TTATTTAAATATGAGAAAACAATATTTGCACTAATCGGTCACGAAGTAGTACGTTTTCAC
TGTTATTTTTGTCTATTCTTTTGTGATTAATTAAGCTACAATATGACCTATAGATTTAGT
GACTTAACATTGTAGAACACTGTTTGACGTCAAATTGTTGTTGGTAAGTGCCAAAAGGTT
CTAAATTTTGTTAGCTTACTAGCTGATAATTCACAGTAAAATGTATCTAAAATTTTGAAC
AATCTGAATCTTTCAGTTGGTGAAAAACTAATTCAACTTAATATCACAGTCAGAAGCGTT
ACCGCTGAGCTATTCATGCCTCAACTAAACTTTTGTAGAATATAAATAATAACACTTATT
CAATGAAACATGATCGTAAAAGACTGAATAAAGTTTTTTACTAGGTCGAACAACGCAGTT
AGCAATGACACCGTGAGGGTTAGTCGTTTCTGGTTTTCGATACTTAAGACTGTA

consensusID : consensus_412#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 525
fasta sequence

                              [TTTGAGTACCAGAGTGAACATCAACTCTGAGATGCGAGTACATTCAGCTGACGAGTCTCAGATAGGACAAAACGAGCGTCCTGGATTCCACTGCTAGTCACTATCCATCTATTCAACATTATATTCTTAAATGGACTATTTTCTTCAAATATTAACTTGTTTTTGTAAAATCTATTGCTTTTATTGTACTGATGCTCGTACACGACAATTACTAAAACCTCGTTATCAACTATAACATTAAGTTTAATAAAGACTCGTGTTATTTTATCCCTCTTACAGATAATTTGTATAGTTTCTCTACAAGTAATAATCTAAGACATTTTACTGTTATTCAGGTTACTTTAAATCTTTAATAGTTCAATAAATACACTGGATTTTAGCCATTCACATCATCAGTAACTGACATGTGATTTCCATTAATGAAAAGGATGAAAACGTTTTGTGTAGAAAAAGTGAGACCTACTTCTTTACAAATGTTAAAATACATATGTATTAAGGTATAAAAGTCTATAGAAAATACCTGCG]

[+] EMBL AI975255             [TTTGAGTACCAGAGTGAACATCAACTCTGAGATGCGAGTACATTCAGCTGACGAGTCTCAGATAGGACAAAACGAGCGTCCTGGATTCCACTGCTAGTCACTATCCATCTATTCAACATTATATTCTTAAATGGACTATTTTCTTCAAATATTAACTTGTTTTTGTAAAATCTATTGCTTTTATTGTACTGATGCTCGTACACGACAATTACTAAAACCTCGTTATCAACTATAACATTAAGTTTAATAAAGACTCGTGTTATTTTATCCCTCTTACAGATAATTTGTATAGTTTCTCTACAAGTAATAATCTAAGACATTTTACTGTTATTCAGGTTACTTTAAATCTTTAATAGTTCAATAAATACACTGGATTTTAGCCATTCACATCATCAGTAACTGACATGTGATTTCCATTAATGAAAAGGATGAAAACGTTTTGTGTAGAAAAAGTGAGACCTACTTCTTTACAAATGTTAAAATACATATGTATTAAGGTATAAAAGTCTATAGAAAATACCTGCG]




>consensus_412#1
TTTGAGTACCAGAGTGAACATCAACTCTGAGATGCGAGTACATTCAGCTGACGAGTCTCA
GATAGGACAAAACGAGCGTCCTGGATTCCACTGCTAGTCACTATCCATCTATTCAACATT
ATATTCTTAAATGGACTATTTTCTTCAAATATTAACTTGTTTTTGTAAAATCTATTGCTT
TTATTGTACTGATGCTCGTACACGACAATTACTAAAACCTCGTTATCAACTATAACATTA
AGTTTAATAAAGACTCGTGTTATTTTATCCCTCTTACAGATAATTTGTATAGTTTCTCTA
CAAGTAATAATCTAAGACATTTTACTGTTATTCAGGTTACTTTAAATCTTTAATAGTTCA
ATAAATACACTGGATTTTAGCCATTCACATCATCAGTAACTGACATGTGATTTCCATTAA
TGAAAAGGATGAAAACGTTTTGTGTAGAAAAAGTGAGACCTACTTCTTTACAAATGTTAA
AATACATATGTATTAAGGTATAAAAGTCTATAGAAAATACCTGCG

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_412#0      TTGGGACTCGTCAGCTGGATGTACCTGCATCTCAGAGTTGATGTTCACTCTGAGACTCGA 60
consensus_412#1      -----------------------TTTGAGTACCAGAGTGAACATCAACTCTGAGATGCGA 37
                                              **  *  ******  *  *  *********  ***

consensus_412#0      AAATCATTATTATTTTTTTTATCTTATCCAAATGTTTGATTTACTTTCTTCACGTTTACG 120
consensus_412#1      GTA-CAT--TCAGCTGACGAGTCTCAGATAGG-ACAAAACGAGCGTCCTGGATTCCACTG 93
                       * ***  * *  *      *** *   *        *    * * **  *       *

consensus_412#0      TTATTTAAATATGAGAAAACAATATTTGCACTAATCGGTCACGAAGTAGTACGTTTTCAC 180
consensus_412#1      CTAGTCAC-TAT-------CCATCTATTCAACATTATATTCTTAAATGGACTATTTTC-T 144
                      ** * *  ***       * ** * * **  * *   *    ** * *    *****  

consensus_412#0      TGTTATTTTTGTCTATTCTTTTGTGATTAATTAAGCTACAATATGACCTATAGATTTAGT 240
consensus_412#1      TCAAATATTAACTTGTTTTTGTAAAATCTATT--GCTTTTATTGTACTGATG---CTCGT 199
                     *   ** **    * ** ** *   **  ***  ***   **   **  **     * **

consensus_412#0      GACTTAACATTGTAGAACACTGTTTGACGTCAAATTGTTGTTGGTAAGTGCCAAAAGGTT 300
consensus_412#1      -ACACGACAATTACTAAAACC--TCGTTATCAACTA--TAACATTAAGTTTAATAAAGAC 254
                      **   *** *    ** **   * *   **** *   *     *****   * ** *  

consensus_412#0      CTAAATTTTGTTAGCTTACTAGCTGATAATTCACAGTAAAATGTATCTAAAATTTTGAAC 360
consensus_412#1      TCGTGTTATTTTATCCCTCTTACAGATAATTT---GTATAGTTTCTCTACAAGT---AAT 308
                          ** * *** *   **  * *******    *** * * * **** ** *   ** 

consensus_412#0      AATCTGAATCTTTCAGTTGGTGAA-AAACTAATTCAA---CTTAATATCACAGTCAGAAG 416
consensus_412#1      AATCTAAGACATTTTACTGTTATTCAGGTTACTTTAAATCTTTAATAGTTCAAT-AAATA 367
                     ***** *  * **    ** *    *   ** ** **    ******   ** * * *  

consensus_412#0      CGTTACCGCTGAGCTATTCATGCCTCAACTAAACTTTTGTAGAATATAAATAATAACACT 476
consensus_412#1      CACTGGATTTTAGCCATTCACATCATCAGTAA-CTGACATGTGATTTCCATTAATGAAAA 426
                     *  *     * *** *****   *   * *** **    *   ** *  ** *    *  

consensus_412#0      TATTCAATGAAACATGATCGTAAAAGACTGAATAAAGTTTTTTACTAG-GTCGAACAACG 535
consensus_412#1      GGATGAAAACGTTTTGTGTAGAAAAAGTGAGACCTACTTCTTTACAAATGTTAAAATACA 486
                        * **       **     ****      *   * ** ***** *  **  **  ** 

consensus_412#0      CAGTTAGCAATGACACCGTGAGGGTTAGTCGTTTCTGGTTTTCGATACTTAAGACTGTA 594
consensus_412#1      TATGTATTAAGG----TATAAAAGTCTATAGAAAATA-CCTGCG--------------- 525
                      *  **  ** *      * *  **   * *    *    * **