cluster # 413

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Schistosoma mansoni
cluster # 413 cluster # 413 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_413#0 length = 471 sequences # 1

consensus_413#1 length = 442 sequences # 1

consensusID : consensus_413#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 471
fasta sequence

                              [TACATATCAATTTGAGAATTCAGGAAAAGAATGATTAAACGTCCGAATGTATAAATGTACAAGTAATTTGATCAAAGATGAATTATTTTTATAGTATCTGTCTATACATTTGACTGTTGTATTTCAGTATCTAATCCAAATAGATTTCGTGTTGCTGAAGTGTATTCTTCCAAATTATTTTTTTCATCTGCACCCGGTACAGTCACGAATGGTACATTTCGAATAGGTCGAAGACGACCATGTCGATATTTAGGCGGATCAGGTCGTTTTACCCATTGGTCACCATTGAGTATATCGTTTTTAGACCATATAGATTTTAATGCTTTTCGATACTGTACAATTGCAGAATTAGATTCAAATTCGGTTGTGAAATCACTTTCTTTTCTTTGATTATTTCTGATAACTTGTTCATTATTGCGCAATGAAAGTAAGTTGAAAAGACGACGGCGTGTTTCACTTTTATCCCAATCA]

[+] EMBL CD074768             [TACATATCAATTTGAGAATTCAGGAAAAGAATGATTAAACGTCCGAATGTATAAATGTACAAGTAATTTGATCAAAGATGAATTATTTTTATAGTATCTGTCTATACATTTGACTGTTGTATTTCAGTATCTAATCCAAATAGATTTCGTGTTGCTGAAGTGTATTCTTCCAAATTATTTTTTTCATCTGCACCCGGTACAGTCACGAATGGTACATTTCGAATAGGTCGAAGACGACCATGTCGATATTTAGGCGGATCAGGTCGTTTTACCCATTGGTCACCATTGAGTATATCGTTTTTAGACCATATAGATTTTAATGCTTTTCGATACTGTACAATTGCAGAATTAGATTCAAATTCGGTTGTGAAATCACTTTCTTTTCTTTGATTATTTCTGATAACTTGTTCATTATTGCGCAATGAAAGTAAGTTGAAAAGACGACGGCGTGTTTCACTTTTATCCCAATCA]




>consensus_413#0
TACATATCAATTTGAGAATTCAGGAAAAGAATGATTAAACGTCCGAATGTATAAATGTAC
AAGTAATTTGATCAAAGATGAATTATTTTTATAGTATCTGTCTATACATTTGACTGTTGT
ATTTCAGTATCTAATCCAAATAGATTTCGTGTTGCTGAAGTGTATTCTTCCAAATTATTT
TTTTCATCTGCACCCGGTACAGTCACGAATGGTACATTTCGAATAGGTCGAAGACGACCA
TGTCGATATTTAGGCGGATCAGGTCGTTTTACCCATTGGTCACCATTGAGTATATCGTTT
TTAGACCATATAGATTTTAATGCTTTTCGATACTGTACAATTGCAGAATTAGATTCAAAT
TCGGTTGTGAAATCACTTTCTTTTCTTTGATTATTTCTGATAACTTGTTCATTATTGCGC
AATGAAAGTAAGTTGAAAAGACGACGGCGTGTTTCACTTTTATCCCAATCA

consensusID : consensus_413#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 442
fasta sequence

                              [NNNNNNNNNNNTTGAGAATTCAGGAAAAGAATGATTAAACGTCCGAATGTATAAATGTACAAGTAATTTGATCAAAGATGAATTATTTTTATAGTATCTGTCTATACATTTGACTGTTGTATTTCAGTATCTAATCCAAATAGATTTCGTGTTGCTGAAGTTGCACCCGGTACAGTCACGAATGGTACATTTCGAATAGGTCGAAGACGACCATGTCGATATTTAGGCGGATCAGGTCGTTTTACCCATTGGTCACCATTGAGTATATCGTTTTTAGACCATATAGATTTTAATGCTTTTCGATACTGTACAATTGCAGAATTAGATTCAAATTCGGTTGTGAAATCACTTTCTTTTCTTTGATTATTTCTGATAACTTGTTCATTATTGCGCAATGAAAGTAAGTTGAAAAGACGACGGCGTGTTTCACTTTTATCCCAAT]

[-] EMBL CD080934             [NNNNNNNNNNNTTGAGAATTCAGGAAAAGAATGATTAAACGTCCGAATGTATAAATGTACAAGTAATTTGATCAAAGATGAATTATTTTTATAGTATCTGTCTATACATTTGACTGTTGTATTTCAGTATCTAATCCAAATAGATTTCGTGTTGCTGAAGTTGCACCCGGTACAGTCACGAATGGTACATTTCGAATAGGTCGAAGACGACCATGTCGATATTTAGGCGGATCAGGTCGTTTTACCCATTGGTCACCATTGAGTATATCGTTTTTAGACCATATAGATTTTAATGCTTTTCGATACTGTACAATTGCAGAATTAGATTCAAATTCGGTTGTGAAATCACTTTCTTTTCTTTGATTATTTCTGATAACTTGTTCATTATTGCGCAATGAAAGTAAGTTGAAAAGACGACGGCGTGTTTCACTTTTATCCCAAT]




>consensus_413#1
NNNNNNNNNNNTTGAGAATTCAGGAAAAGAATGATTAAACGTCCGAATGTATAAATGTAC
AAGTAATTTGATCAAAGATGAATTATTTTTATAGTATCTGTCTATACATTTGACTGTTGT
ATTTCAGTATCTAATCCAAATAGATTTCGTGTTGCTGAAGTTGCACCCGGTACAGTCACG
AATGGTACATTTCGAATAGGTCGAAGACGACCATGTCGATATTTAGGCGGATCAGGTCGT
TTTACCCATTGGTCACCATTGAGTATATCGTTTTTAGACCATATAGATTTTAATGCTTTT
CGATACTGTACAATTGCAGAATTAGATTCAAATTCGGTTGTGAAATCACTTTCTTTTCTT
TGATTATTTCTGATAACTTGTTCATTATTGCGCAATGAAAGTAAGTTGAAAAGACGACGG
CGTGTTTCACTTTTATCCCAAT

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_413#0      TACATATCAATTTGAGAATTCAGGAAAAGAATGATTAAACGTCCGAATGTATAAATGTAC 60
consensus_413#1      NNNNNNNNNNNTTGAGAATTCAGGAAAAGAATGATTAAACGTCCGAATGTATAAATGTAC 60
                                *************************************************

consensus_413#0      AAGTAATTTGATCAAAGATGAATTATTTTTATAGTATCTGTCTATACATTTGACTGTTGT 120
consensus_413#1      AAGTAATTTGATCAAAGATGAATTATTTTTATAGTATCTGTCTATACATTTGACTGTTGT 120
                     ************************************************************

consensus_413#0      ATTTCAGTATCTAATCCAAATAGATTTCGTGTTGCTGAAGTGTATTCTTCCAAATTATTT 180
consensus_413#1      ATTTCAGTATCTAATCCAAATAGATTTCGTGTTGCTGAAGT------------------- 161
                     *****************************************                   

consensus_413#0      TTTTCATCTGCACCCGGTACAGTCACGAATGGTACATTTCGAATAGGTCGAAGACGACCA 240
consensus_413#1      --------TGCACCCGGTACAGTCACGAATGGTACATTTCGAATAGGTCGAAGACGACCA 213
                             ****************************************************

consensus_413#0      TGTCGATATTTAGGCGGATCAGGTCGTTTTACCCATTGGTCACCATTGAGTATATCGTTT 300
consensus_413#1      TGTCGATATTTAGGCGGATCAGGTCGTTTTACCCATTGGTCACCATTGAGTATATCGTTT 273
                     ************************************************************

consensus_413#0      TTAGACCATATAGATTTTAATGCTTTTCGATACTGTACAATTGCAGAATTAGATTCAAAT 360
consensus_413#1      TTAGACCATATAGATTTTAATGCTTTTCGATACTGTACAATTGCAGAATTAGATTCAAAT 333
                     ************************************************************

consensus_413#0      TCGGTTGTGAAATCACTTTCTTTTCTTTGATTATTTCTGATAACTTGTTCATTATTGCGC 420
consensus_413#1      TCGGTTGTGAAATCACTTTCTTTTCTTTGATTATTTCTGATAACTTGTTCATTATTGCGC 393
                     ************************************************************

consensus_413#0      AATGAAAGTAAGTTGAAAAGACGACGGCGTGTTTCACTTTTATCCCAATCA 471
consensus_413#1      AATGAAAGTAAGTTGAAAAGACGACGGCGTGTTTCACTTTTATCCCAAT-- 442
                     *************************************************