cluster # 4130

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Schistosoma mansoni
cluster # 4130 cluster # 4130 Sequences # 3 consensus # 3

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_4130#0 length = 434 sequences # 1

consensus_4130#1 length = 342 sequences # 1
consensus_4130#2 length = 282 sequences # 1

consensusID : consensus_4130#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 434
fasta sequence

                              [TCTAGCTGACTCTTCAATTATAGTCAGACTCTTAGACTCCTCAAGATGCTGCTTTTCTATCCACGTTCTCCGTGTAAATCTTGTTTTTTTCGAAGGATCTTCTGATTGTGTAGATTTTGAAATTGTTGACGGTTTCAAATTTTCTTGATCAGTAGAATCAAGTATATTAGTTTCTTCAGTTGGCGCTACTTCGATATAGACAACTGAATAACGCCCACCATCTTTGGTATCAATGTATTTTCTGCTCTTGTATGTTATTGGCTTACTTTTAGTGTCTATTGGTCGTTCAAGTGTTAACAACATTTGTTTGTCATATGTAGTTACAAAATTTTGGTTTTCATTCAAGAAATCGTCATCAGATCTTGAATGAAAATCTTGTCTTGAATGGTATTTTTGATAATCCTCAATTTCATCATCCGTCGTACAAGAACTAC]

[+] EMBL CD167538             [TCTAGCTGACTCTTCAATTATAGTCAGACTCTTAGACTCCTCAAGATGCTGCTTTTCTATCCACGTTCTCCGTGTAAATCTTGTTTTTTTCGAAGGATCTTCTGATTGTGTAGATTTTGAAATTGTTGACGGTTTCAAATTTTCTTGATCAGTAGAATCAAGTATATTAGTTTCTTCAGTTGGCGCTACTTCGATATAGACAACTGAATAACGCCCACCATCTTTGGTATCAATGTATTTTCTGCTCTTGTATGTTATTGGCTTACTTTTAGTGTCTATTGGTCGTTCAAGTGTTAACAACATTTGTTTGTCATATGTAGTTACAAAATTTTGGTTTTCATTCAAGAAATCGTCATCAGATCTTGAATGAAAATCTTGTCTTGAATGGTATTTTTGATAATCCTCAATTTCATCATCCGTCGTACAAGAACTAC]




>consensus_4130#0
TCTAGCTGACTCTTCAATTATAGTCAGACTCTTAGACTCCTCAAGATGCTGCTTTTCTAT
CCACGTTCTCCGTGTAAATCTTGTTTTTTTCGAAGGATCTTCTGATTGTGTAGATTTTGA
AATTGTTGACGGTTTCAAATTTTCTTGATCAGTAGAATCAAGTATATTAGTTTCTTCAGT
TGGCGCTACTTCGATATAGACAACTGAATAACGCCCACCATCTTTGGTATCAATGTATTT
TCTGCTCTTGTATGTTATTGGCTTACTTTTAGTGTCTATTGGTCGTTCAAGTGTTAACAA
CATTTGTTTGTCATATGTAGTTACAAAATTTTGGTTTTCATTCAAGAAATCGTCATCAGA
TCTTGAATGAAAATCTTGTCTTGAATGGTATTTTTGATAATCCTCAATTTCATCATCCGT
CGTACAAGAACTAC

consensusID : consensus_4130#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 342
fasta sequence

                              [GATTGTGAAGTGTGGTTATAAAATCTGTAGTACAGCATTCAACGCTTCTGAAGATTGGACGTGCTTCTACACCTATATCTGTGATTTGAACTTTACTAGGTCTTGTATGAATTATTCTAGCTGACTCTTCAATTTTAGTCAGACTCTTTGCCTCCTCAACATGCTGCTTTTCTATCCACGTTCTCCGTGTAAATCTTGTTTTTTTCGAAGGATCTTCTGATTGTGTAGATTTTGAAATTGTTGACGGTTTCAAATTTTCTTGATCAGTGGAATCAAGTATATTAGTTTCTTCAGTTGTCGCTATTTCGATATAGACAACTGAAGAAACTAATATACTTGATT]

[+] EMBL CD065793             [GATTGTGAAGTGTGGTTATAAAATCTGTAGTACAGCATTCAACGCTTCTGAAGATTGGACGTGCTTCTACACCTATATCTGTGATTTGAACTTTACTAGGTCTTGTATGAATTATTCTAGCTGACTCTTCAATTTTAGTCAGACTCTTTGCCTCCTCAACATGCTGCTTTTCTATCCACGTTCTCCGTGTAAATCTTGTTTTTTTCGAAGGATCTTCTGATTGTGTAGATTTTGAAATTGTTGACGGTTTCAAATTTTCTTGATCAGTGGAATCAAGTATATTAGTTTCTTCAGTTGTCGCTATTTCGATATAGACAACTGAAGAAACTAATATACTTGATT]




>consensus_4130#1
GATTGTGAAGTGTGGTTATAAAATCTGTAGTACAGCATTCAACGCTTCTGAAGATTGGAC
GTGCTTCTACACCTATATCTGTGATTTGAACTTTACTAGGTCTTGTATGAATTATTCTAG
CTGACTCTTCAATTTTAGTCAGACTCTTTGCCTCCTCAACATGCTGCTTTTCTATCCACG
TTCTCCGTGTAAATCTTGTTTTTTTCGAAGGATCTTCTGATTGTGTAGATTTTGAAATTG
TTGACGGTTTCAAATTTTCTTGATCAGTGGAATCAAGTATATTAGTTTCTTCAGTTGTCG
CTATTTCGATATAGACAACTGAAGAAACTAATATACTTGATT

consensusID : consensus_4130#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 282
fasta sequence

                              [GGAAAAACCCTGACGCTCTTTGCCTCCTCAACATGCTGCTTTTCTATCCACGTTCTCCGTGTAAATCTTGTTTTTTTCGAAGGATCTTCTGATTGTGTAGATTTTGAAATTGTTGACGGTTTCAAATTTTCTTGATCAGTAGAATCAAGTATATTAGTTTCTTCAGTTGGCGCTACTTCGATATAGACAACTGAATAACGCCCACCATCTTTGGTATCAATGTATTTTCTGCTCTTGTATGTTATTGGCTTACTTTTAGTGTCTATAGGTCGTTCAAGTGTT]

[+] EMBL CD167557             [GGAAAAACCCTGACGCTCTTTGCCTCCTCAACATGCTGCTTTTCTATCCACGTTCTCCGTGTAAATCTTGTTTTTTTCGAAGGATCTTCTGATTGTGTAGATTTTGAAATTGTTGACGGTTTCAAATTTTCTTGATCAGTAGAATCAAGTATATTAGTTTCTTCAGTTGGCGCTACTTCGATATAGACAACTGAATAACGCCCACCATCTTTGGTATCAATGTATTTTCTGCTCTTGTATGTTATTGGCTTACTTTTAGTGTCTATAGGTCGTTCAAGTGTT]




>consensus_4130#2
GGAAAAACCCTGACGCTCTTTGCCTCCTCAACATGCTGCTTTTCTATCCACGTTCTCCGT
GTAAATCTTGTTTTTTTCGAAGGATCTTCTGATTGTGTAGATTTTGAAATTGTTGACGGT
TTCAAATTTTCTTGATCAGTAGAATCAAGTATATTAGTTTCTTCAGTTGGCGCTACTTCG
ATATAGACAACTGAATAACGCCCACCATCTTTGGTATCAATGTATTTTCTGCTCTTGTAT
GTTATTGGCTTACTTTTAGTGTCTATAGGTCGTTCAAGTGTT

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_4130#0      ------------------------------------------------------------
consensus_4130#2      ------------------------------------------------------------
consensus_4130#1      GATTGTGAAGTGTGGTTATAAAATCTGTAGTACAGCATTCAACGCTTCTGAAGATTGGAC 60
                                                                                  

consensus_4130#0      -------------------------------------------------------TCTAG 5
consensus_4130#2      ------------------------------------------------------------
consensus_4130#1      GTGCTTCTACACCTATATCTGTGATTTGAACTTTACTAGGTCTTGTATGAATTATTCTAG 120
                                                                                  

consensus_4130#0      CTGACTCTTCAATTATAGTCAGACTCTTAGACTCCTCAAGATGCTGCTTTTCTATCCACG 65
consensus_4130#2      --------GGAAAAACCCTGACGCTCTTTGCCTCCTCAACATGCTGCTTTTCTATCCACG 52
consensus_4130#1      CTGACTCTTCAATTTTAGTCAGACTCTTTGCCTCCTCAACATGCTGCTTTTCTATCCACG 180
                                **      * *  ***** * ******** ********************

consensus_4130#0      TTCTCCGTGTAAATCTTGTTTTTTTCGAAGGATCTTCTGATTGTGTAGATTTTGAAATTG 125
consensus_4130#2      TTCTCCGTGTAAATCTTGTTTTTTTCGAAGGATCTTCTGATTGTGTAGATTTTGAAATTG 112
consensus_4130#1      TTCTCCGTGTAAATCTTGTTTTTTTCGAAGGATCTTCTGATTGTGTAGATTTTGAAATTG 240
                      ************************************************************

consensus_4130#0      TTGACGGTTTCAAATTTTCTTGATCAGTAGAATCAAGTATATTAGTTTCTTCAGTTGGCG 185
consensus_4130#2      TTGACGGTTTCAAATTTTCTTGATCAGTAGAATCAAGTATATTAGTTTCTTCAGTTGGCG 172
consensus_4130#1      TTGACGGTTTCAAATTTTCTTGATCAGTGGAATCAAGTATATTAGTTTCTTCAGTTGTCG 300
                      **************************** **************************** **

consensus_4130#0      CTACTTCGATATAGACAACTGAATAACGCCCACCATCTTTGGTATCAATGTATTTTCTGC 245
consensus_4130#2      CTACTTCGATATAGACAACTGAATAACGCCCACCATCTTTGGTATCAATGTATTTTCTGC 232
consensus_4130#1      CTATTTCGATATAGACAACTGAAGAA--ACTAATATACTTGATT---------------- 342
                      *** ******************* **   * *  **  *** *                 

consensus_4130#0      TCTTGTATGTTATTGGCTTACTTTTAGTGTCTATTGGTCGTTCAAGTGTTAACAACATTT 305
consensus_4130#2      TCTTGTATGTTATTGGCTTACTTTTAGTGTCTATAGGTCGTTCAAGTGTT---------- 282
consensus_4130#1      ------------------------------------------------------------
                                                                                  

consensus_4130#0      GTTTGTCATATGTAGTTACAAAATTTTGGTTTTCATTCAAGAAATCGTCATCAGATCTTG 365
consensus_4130#2      ------------------------------------------------------------
consensus_4130#1      ------------------------------------------------------------
                                                                                  

consensus_4130#0      AATGAAAATCTTGTCTTGAATGGTATTTTTGATAATCCTCAATTTCATCATCCGTCGTAC 425
consensus_4130#2      ------------------------------------------------------------
consensus_4130#1      ------------------------------------------------------------
                                                                                  

consensus_4130#0      AAGAACTAC 434
consensus_4130#2      ---------
consensus_4130#1      ---------