cluster # 4146

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Schistosoma mansoni
cluster # 4146 cluster # 4146 Sequences # 3 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_4146#0 length = 416 sequences # 2

consensus_4146#1 length = 112 sequences # 1

consensusID : consensus_4146#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 416
fasta sequence

                              [GCTTATGTTTGGTGTGGATAAAATGAGCATGGGTACTGTCTGTGTTCTGTGGTCCATGAGAGACAGAATGGGGTGTGGTTCTATTTCTTACCCTATCAGATGGAACGTATAACAGAATGGTCCTCTCTAAGAAGTTGCATACCTCCTCTCAGTCCTTGAAATTGATGACTACTTTCTTTCACTCATCTGCCTGCCATCCTTTTTACCCCCAAAGTTGGATGTTACTGTATTCAACTTTCTGAATTCAATTTTAGTAACTTGTTGTGCAGTTTGTCCAACTGTAGACTTCACGAATTGTTCTGCTAGTTCTACCCTCAGATTACAACTCACAATCATAAACACTCATATGGAAAGGCCCTTACCACCACCGCCACGGCAAAGCATCAGCTGTTGCAC-CACACCCCAAGTTCCGCTCC]

[+] EMBL CD087331             [GCTTATGTTTGGTGTGGATAAAATGAGCATGGGTACTGTCTGTGTTCTGTGGTCCATGAGAGACAGAATGGGGTGTGGTTCTATTTCTTACCCTATCAGATGGAACGTATAACAGAATGGTCCTCTCTAAGAAGTTGCATACCTCCTCTCAGTCCTTGAAATTGATGACTACTTTCTTTCACTCATCTGCCTGCCATCCTTTTTACCCCCAAAGTTGGATGTTACTGTATTCAACTTTCTGAATTCAATTTTAGTAACTTGTTGTGCAGTTTGTCCAACTGTAGACTTCACGAATTGTTCTGCTAGTTCTACCCTCAGATTACAACTCACAATCATAAACACTCATATGGAAAGGCCCTTACCACCACCGCCACGGCAAAGCATCAGCTGTTGCAC CACACCCCAAGTTCCGCTCC]
[+] EMBL CD087221             [GCTAAGGTTTGGTGTTTATAAAATGAGCATGGGTACTGTCTGTGTTCCGTGGTCCATGAGAGACAGAATGGGGTGTGGTTCTATTTCTTACCCTATCAGATGGAACGTAGAACAGAATGGTCCTCTCTAAGAAGTTGCATACCTCCTCTCAGTCCTTGAAATTGATGACTACTTTCTTTCACTCATCTGCCTGCCATCCTTTCTACCCCCAAAGTTGGATGTTACTGTATTCAACTTTCTGAATTCAATTTTAGTAGC TGTTGTGCAGTTTGTCCAACTGTAGACTCCAGGAATTGTTCTGCTAGTCCTACCCTCAGATTACAACTCAGAATCAGAAACACTCATGTGGAAAGGCCCTTAACACCACCGCCACGGCAAAGCAGCAGCTGTTGCACACA ACCCCAAAGTCCGCTac]




>consensus_4146#0
GCTTATGTTTGGTGTGGATAAAATGAGCATGGGTACTGTCTGTGTTCTGTGGTCCATGAG
AGACAGAATGGGGTGTGGTTCTATTTCTTACCCTATCAGATGGAACGTATAACAGAATGG
TCCTCTCTAAGAAGTTGCATACCTCCTCTCAGTCCTTGAAATTGATGACTACTTTCTTTC
ACTCATCTGCCTGCCATCCTTTTTACCCCCAAAGTTGGATGTTACTGTATTCAACTTTCT
GAATTCAATTTTAGTAACTTGTTGTGCAGTTTGTCCAACTGTAGACTTCACGAATTGTTC
TGCTAGTTCTACCCTCAGATTACAACTCACAATCATAAACACTCATATGGAAAGGCCCTT
ACCACCACCGCCACGGCAAAGCATCAGCTGTTGCACCACACCCCAAGTTCCGCTCC

consensusID : consensus_4146#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 112
fasta sequence

                              [GGTAGCGGGACTTGGGGTTGTGTGCAACAGCTGCTGCTTTGCCGTGGCGGTGGTGCTAAAGGCCTTTCCATCTGAATGTTTCTGATTCTGACTTGTAATCTGAGGGTAGGAC]

[+] EMBL CD087227             [GGTAGCGGGACTTGGGGTTGTGTGCAACAGCTGCTGCTTTGCCGTGGCGGTGGTGCTAAAGGCCTTTCCATCTGAATGTTTCTGATTCTGACTTGTAATCTGAGGGTAGGAC]




>consensus_4146#1
GGTAGCGGGACTTGGGGTTGTGTGCAACAGCTGCTGCTTTGCCGTGGCGGTGGTGCTAAA
GGCCTTTCCATCTGAATGTTTCTGATTCTGACTTGTAATCTGAGGGTAGGAC

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_4146#0      GCTTATGTTTGGTGTGGATAAAATGAGCATGGGTACTGTCTGTGTTCTGTGGTCCATGAG 60
consensus_4146#1      ------------------------------------------------------------
                                                                                  

consensus_4146#0      AGACAGAATGGGGTGTGGTTCTATTTCTTACCCTATCAGATGGAACGTATAACAGAATGG 120
consensus_4146#1      ------------------------------------------------------------
                                                                                  

consensus_4146#0      TCCTCTCTAAGAAGTTGCATACCTCCTCTCAGTCCTTGAAATTGATGACTACTTTCTTTC 180
consensus_4146#1      ------------------------GGTAGCGGGACTTGGGGTTGTGTGCAACAGCTGCTG 36
                                                *  * *  ****   ***    * **      * 

consensus_4146#0      ACTCATC-TGCCTGCCATCCTTTTTACCCCCAAAGTTGGATGTTACTGTATTCAACTTTC 239
consensus_4146#1      CTTTGCCGTGGCGGTGGTGCTAAAGGCCTTTCCATCTGAATGTTTCTGATTCTGACTTGT 96
                        *   * ** * *   * **     **     *  ** ***** ***  *   ****  

consensus_4146#0      TGAATTCAATTTTAGTAACTTGTTGTGCAGTTTGTCCAACTGTAGACTTCACGAATTGTT 299
consensus_4146#1      --AATCTGAGGGTAGGAC------------------------------------------ 112
                        ***   *   *** *                                           

consensus_4146#0      CTGCTAGTTCTACCCTCAGATTACAACTCACAATCATAAACACTCATATGGAAAGGCCCT 359
consensus_4146#1      ------------------------------------------------------------
                                                                                  

consensus_4146#0      TACCACCACCGCCACGGCAAAGCATCAGCTGTTGCACCACACCCCAAGTTCCGCTCC 416
consensus_4146#1      ---------------------------------------------------------