cluster # 4151

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Schistosoma mansoni
cluster # 4151 cluster # 4151 Sequences # 3 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_4151#0 length = 900 sequences # 1

consensus_4151#1 length = 622 sequences # 2

consensusID : consensus_4151#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 900
fasta sequence

                              [AGTCAATCAATGCGACAGACTCAAAAGCAAACAATAGAAAAGACTCTGTCACATTTAAATAATAAACCTCCGCTTATATTTTGGCATACTGACCTACGACAAGTTCCTGAAAATTTCTCATTTTTTATAGGTCACGAATTTTTTGATGTGCTTCCAGTTCACCGTTTTCAGAAGCATGAAGGAAAATGGCACGAAGTTTTAGTTAGCTCTATGATGAATTCTAATAGTTTATGTTTTGTACGTTCAGGCACAAAAACTCCAGCATCAATAGTATATCTCCCGTTAGTTCCTAATCTGTCGAACCGAGACTCTGTGGAAGTCTGTCCTGATATGATATGTGTCGCACAATTATTATGCAAACGAATTAATAAAACGGGTGGTAGTGCACTATTGATTGATTATGGTCATGAAGGTGAAAAAGGTGATNACATTTCGTGGTTTTCATAAACACTCAGTTTGTGATCCTCTCATCAATCCTGGTCACACTGATCTAACATGTGATGTTGATTTTAGTATTTTATGTCATGCAGTCAAAAACTCCGATGCTAAAGTAAGACTTCATGGCCCTGTAACTCAAGCTTATTTTCTTATCAATATGGGTTTATTCACCCGATTAAAGGTTTTATTGTCTAAATGTGAATCAGAAACACANAAGATGAATTGTTNTCAGCGTGTGAAATCCTCGTCACCATGAAACAATGGGTAGTCGATTCAAATTGTTGCATCACCCCTGAGTTAGATCAGATTCCGNTGGNTGTGAGCNACACTACCTGGNNTTACTNCATTATCTGGTACACATATGCCAGNCAGATCTGATAAATAATGGNGTTGTTTTTTTTCGATACTNCCTTGGNTATTATAGCTAATACTGACTCATCTCTACTTGTCATAAACTCATTT]

[+] EMBL CD082012             [AGTCAATCAATGCGACAGACTCAAAAGCAAACAATAGAAAAGACTCTGTCACATTTAAATAATAAACCTCCGCTTATATTTTGGCATACTGACCTACGACAAGTTCCTGAAAATTTCTCATTTTTTATAGGTCACGAATTTTTTGATGTGCTTCCAGTTCACCGTTTTCAGAAGCATGAAGGAAAATGGCACGAAGTTTTAGTTAGCTCTATGATGAATTCTAATAGTTTATGTTTTGTACGTTCAGGCACAAAAACTCCAGCATCAATAGTATATCTCCCGTTAGTTCCTAATCTGTCGAACCGAGACTCTGTGGAAGTCTGTCCTGATATGATATGTGTCGCACAATTATTATGCAAACGAATTAATAAAACGGGTGGTAGTGCACTATTGATTGATTATGGTCATGAAGGTGAAAAAGGTGATNACATTTCGTGGTTTTCATAAACACTCAGTTTGTGATCCTCTCATCAATCCTGGTCACACTGATCTAACATGTGATGTTGATTTTAGTATTTTATGTCATGCAGTCAAAAACTCCGATGCTAAAGTAAGACTTCATGGCCCTGTAACTCAAGCTTATTTTCTTATCAATATGGGTTTATTCACCCGATTAAAGGTTTTATTGTCTAAATGTGAATCAGAAACACANAAGATGAATTGTTNTCAGCGTGTGAAATCCTCGTCACCATGAAACAATGGGTAGTCGATTCAAATTGTTGCATCACCCCTGAGTTAGATCAGATTCCGNTGGNTGTGAGCNACACTACCTGGNNTTACTNCATTATCTGGTACACATATGCCAGNCAGATCTGATAAATAATGGNGTTGTTTTTTTTCGATACTNCCTTGGNTATTATAGCTAATACTGACTCATCTCTACTTGTCATAAACTCATTT]




>consensus_4151#0
AGTCAATCAATGCGACAGACTCAAAAGCAAACAATAGAAAAGACTCTGTCACATTTAAAT
AATAAACCTCCGCTTATATTTTGGCATACTGACCTACGACAAGTTCCTGAAAATTTCTCA
TTTTTTATAGGTCACGAATTTTTTGATGTGCTTCCAGTTCACCGTTTTCAGAAGCATGAA
GGAAAATGGCACGAAGTTTTAGTTAGCTCTATGATGAATTCTAATAGTTTATGTTTTGTA
CGTTCAGGCACAAAAACTCCAGCATCAATAGTATATCTCCCGTTAGTTCCTAATCTGTCG
AACCGAGACTCTGTGGAAGTCTGTCCTGATATGATATGTGTCGCACAATTATTATGCAAA
CGAATTAATAAAACGGGTGGTAGTGCACTATTGATTGATTATGGTCATGAAGGTGAAAAA
GGTGATNACATTTCGTGGTTTTCATAAACACTCAGTTTGTGATCCTCTCATCAATCCTGG
TCACACTGATCTAACATGTGATGTTGATTTTAGTATTTTATGTCATGCAGTCAAAAACTC
CGATGCTAAAGTAAGACTTCATGGCCCTGTAACTCAAGCTTATTTTCTTATCAATATGGG
TTTATTCACCCGATTAAAGGTTTTATTGTCTAAATGTGAATCAGAAACACANAAGATGAA
TTGTTNTCAGCGTGTGAAATCCTCGTCACCATGAAACAATGGGTAGTCGATTCAAATTGT
TGCATCACCCCTGAGTTAGATCAGATTCCGNTGGNTGTGAGCNACACTACCTGGNNTTAC
TNCATTATCTGGTACACATATGCCAGNCAGATCTGATAAATAATGGNGTTGTTTTTTTTC
GATACTNCCTTGGNTATTATAGCTAATACTGACTCATCTCTACTTGTCATAAACTCATTT

consensusID : consensus_4151#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 622
fasta sequence

                              [AAGTCTGTCCTGATATGATATGTGTCGCACAATTATTATGCAAACGAATTAATAAAACGGGTGGTAGTGCACTATTGATTGATTATGGTCATGAAGGTGAAAAAGGTGATACATTTCGTGGTTTTCATAAACACTCAGTTTGTGATCCTCTCATCAATCCTGGTCACACTGATCTAACATGTGATGTTGATTTTAGTATTTTATGTCATGCAGTCAAAAACTCCGATGCTAAAGTAAGACTTCATGGCCCTGTAACTCAAGCTTATTTTCTTATCAATATGGGTTTATTCACCCGATTAAAGGTTTTATTGTCTAAATGTGAATCAGAACAACAAAAAGATGAATTGTTTTCAGCGTGTGAAATCCTCGTCACCAATGAACAAATGGGTAGTCGATTCAAATTTGTTGCAATCACCCCTGAGTTAGAATCAGATTCCGTTGGTTGTGAGCAACAACTACCTGGTTTTACTCCATTATCTGGTACACCATATGCACAGTCAGATTCTGTATAAATAATGTGTTGTTTTTTTTCGTATAACTTCCCTTGTTTATTTATCAGCTAAATTACTGAACTCAATCTCCTAACTTTGTACATATAAACCTCAAATATATATTTTTTATT]

[-] EMBL CD075627             [AAGTCTGTCCTGATATGATATGTGTCGCACAATTATTATGCAAACGAATTAATAAAACGGGTGGTAGTGCACTATTGATTGATTATGGTCATGAAGGTGAAAAAGGTGATACATTTCGTGGTTTTCATAAACACTCAGTTTGTGATCCTCTCATCAATCCTGGTCACACTGATCTAACATGTGATGTTGATTTTAGTATTTTATGTCATGCAGTCAAAAACTCCGATGCTAAAGTAAGACTTCATGGCCCTGTAACTCAAGCTTATTTTCTTATCAATATGGGTTTATTCACCCGATTAAAGGTTTTATTGTCTAAATGTGAATCAGAACAACAAAAAGATGAATTGTTTTCAGCGTGTGAAATCCTCGTCACCAATGAACAAATGGGTAGTCGATTCAAATTTGTTGCAATCACCCCTGAGTTAGAATCAGATTCCGTTGGTTGTGAGCAACAACTACCTGGTTTTACTCCATTATCTGGTACACCATATGCACAGTCAGATTCTGTATAAATAATGTGTTGTTTTTTTTCGTATAACTTCCCTTGTTTATTTATCAGCTAAATTACTGAACTCAATCTCCTAACTTTGTACATATAAACCTCAAATATATATT       ]
[-] EMBL CD076885             [                                                                                                                                                                                                                                                                                                                                                                                                                                         GAATCAGATTCCGTTGGTTGTGAGCAACAACTACCTGGTTTTACTCCATTATCTGGTACCCCATATGCACAGTCAGATTCTGTATAAATAATGTGTTGTTTTTTTTCGTATAACTTCCCTTGTTTATTTATCAGCTAAATTACTGAACTCAATCTCCTAACTTTGTACATATAACCCTCAAATATATATTTTTTATT]




>consensus_4151#1
AAGTCTGTCCTGATATGATATGTGTCGCACAATTATTATGCAAACGAATTAATAAAACGG
GTGGTAGTGCACTATTGATTGATTATGGTCATGAAGGTGAAAAAGGTGATACATTTCGTG
GTTTTCATAAACACTCAGTTTGTGATCCTCTCATCAATCCTGGTCACACTGATCTAACAT
GTGATGTTGATTTTAGTATTTTATGTCATGCAGTCAAAAACTCCGATGCTAAAGTAAGAC
TTCATGGCCCTGTAACTCAAGCTTATTTTCTTATCAATATGGGTTTATTCACCCGATTAA
AGGTTTTATTGTCTAAATGTGAATCAGAACAACAAAAAGATGAATTGTTTTCAGCGTGTG
AAATCCTCGTCACCAATGAACAAATGGGTAGTCGATTCAAATTTGTTGCAATCACCCCTG
AGTTAGAATCAGATTCCGTTGGTTGTGAGCAACAACTACCTGGTTTTACTCCATTATCTG
GTACACCATATGCACAGTCAGATTCTGTATAAATAATGTGTTGTTTTTTTTCGTATAACT
TCCCTTGTTTATTTATCAGCTAAATTACTGAACTCAATCTCCTAACTTTGTACATATAAA
CCTCAAATATATATTTTTTATT

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_4151#0      AGTCAATCAATGCGACAGACTCAAAAGCAAACAATAGAAAAGACTCTGTCACATTTAAAT 60
consensus_4151#1      ------------------------------------------------------------
                                                                                  

consensus_4151#0      AATAAACCTCCGCTTATATTTTGGCATACTGACCTACGACAAGTTCCTGAAAATTTCTCA 120
consensus_4151#1      ------------------------------------------------------------
                                                                                  

consensus_4151#0      TTTTTTATAGGTCACGAATTTTTTGATGTGCTTCCAGTTCACCGTTTTCAGAAGCATGAA 180
consensus_4151#1      ------------------------------------------------------------
                                                                                  

consensus_4151#0      GGAAAATGGCACGAAGTTTTAGTTAGCTCTATGATGAATTCTAATAGTTTATGTTTTGTA 240
consensus_4151#1      ------------------------------------------------------------
                                                                                  

consensus_4151#0      CGTTCAGGCACAAAAACTCCAGCATCAATAGTATATCTCCCGTTAGTTCCTAATCTGTCG 300
consensus_4151#1      ------------------------------------------------------------
                                                                                  

consensus_4151#0      AACCGAGACTCTGTGGAAGTCTGTCCTGATATGATATGTGTCGCACAATTATTATGCAAA 360
consensus_4151#1      ----------------AAGTCTGTCCTGATATGATATGTGTCGCACAATTATTATGCAAA 44
                                      ********************************************

consensus_4151#0      CGAATTAATAAAACGGGTGGTAGTGCACTATTGATTGATTATGGTCATGAAGGTGAAAAA 420
consensus_4151#1      CGAATTAATAAAACGGGTGGTAGTGCACTATTGATTGATTATGGTCATGAAGGTGAAAAA 104
                      ************************************************************

consensus_4151#0      GGTGATNACATTTCGTGGTTTTCATAAACACTCAGTTTGTGATCCTCTCATCAATCCTGG 480
consensus_4151#1      GGTGATA-CATTTCGTGGTTTTCATAAACACTCAGTTTGTGATCCTCTCATCAATCCTGG 163
                      ******  ****************************************************

consensus_4151#0      TCACACTGATCTAACATGTGATGTTGATTTTAGTATTTTATGTCATGCAGTCAAAAACTC 540
consensus_4151#1      TCACACTGATCTAACATGTGATGTTGATTTTAGTATTTTATGTCATGCAGTCAAAAACTC 223
                      ************************************************************

consensus_4151#0      CGATGCTAAAGTAAGACTTCATGGCCCTGTAACTCAAGCTTATTTTCTTATCAATATGGG 600
consensus_4151#1      CGATGCTAAAGTAAGACTTCATGGCCCTGTAACTCAAGCTTATTTTCTTATCAATATGGG 283
                      ************************************************************

consensus_4151#0      TTTATTCACCCGATTAAAGGTTTTATTGTCTAAATGTGAATCAGAAACACANAA-GATGA 659
consensus_4151#1      TTTATTCACCCGATTAAAGGTTTTATTGTCTAAATGTGAATCAGAACAACAAAAAGATGA 343
                      **********************************************  *** ** *****

consensus_4151#0      ATTGTTNTCAGCGTGTGAAATCCTCGTCACCA-TGAAACAATGGGTAGTCGATTCAAATT 718
consensus_4151#1      ATTGTTTTCAGCGTGTGAAATCCTCGTCACCAATGAACAAATGGGTAGTCGATTCAAATT 403
                      ****** ************************* ****  *********************

consensus_4151#0      -GTTGCA-TCACCCCTGAGTTAGA-TCAGATTCCGNTGGNTGTGAGCNACA-CTACCTGG 774
consensus_4151#1      TGTTGCAATCACCCCTGAGTTAGAATCAGATTCCGTTGGTTGTGAGCAACAACTACCTGG 463
                       ****** **************** ********** *** ******* *** ********

consensus_4151#0      NNTTACTNCATTATCTGGTACAC-ATATGC-CAGNCAGAT-CTG-ATAAATAATGGNGTT 830
consensus_4151#1      TTTTACTCCATTATCTGGTACACCATATGCACAGTCAGATTCTGTATAAATAATG-TGTT 522
                        ***** *************** ****** *** ***** *** **********  ***

consensus_4151#0      GTTTTTTTTCG-ATA--CTNCCTTGGNTATTA--TAGCTAA--TACTGA-CTCA---TCT 879
consensus_4151#1      GTTTTTTTTCGTATAACTTCCCTTGTTTATTTATCAGCTAAATTACTGAACTCAATCTCC 582
                      *********** ***   * *****  ****    ******  ****** ****   ** 

consensus_4151#0      CTACTTGTCATAAACTCATTT------------------- 900
consensus_4151#1      TAACTTTGTACATATAAACCTCAAATATATATTTTTTATT 622
                        ****   * * *   *  *