These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_4151#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 900 fasta sequence [AGTCAATCAATGCGACAGACTCAAAAGCAAACAATAGAAAAGACTCTGTCACATTTAAATAATAAACCTCCGCTTATATTTTGGCATACTGACCTACGACAAGTTCCTGAAAATTTCTCATTTTTTATAGGTCACGAATTTTTTGATGTGCTTCCAGTTCACCGTTTTCAGAAGCATGAAGGAAAATGGCACGAAGTTTTAGTTAGCTCTATGATGAATTCTAATAGTTTATGTTTTGTACGTTCAGGCACAAAAACTCCAGCATCAATAGTATATCTCCCGTTAGTTCCTAATCTGTCGAACCGAGACTCTGTGGAAGTCTGTCCTGATATGATATGTGTCGCACAATTATTATGCAAACGAATTAATAAAACGGGTGGTAGTGCACTATTGATTGATTATGGTCATGAAGGTGAAAAAGGTGATNACATTTCGTGGTTTTCATAAACACTCAGTTTGTGATCCTCTCATCAATCCTGGTCACACTGATCTAACATGTGATGTTGATTTTAGTATTTTATGTCATGCAGTCAAAAACTCCGATGCTAAAGTAAGACTTCATGGCCCTGTAACTCAAGCTTATTTTCTTATCAATATGGGTTTATTCACCCGATTAAAGGTTTTATTGTCTAAATGTGAATCAGAAACACANAAGATGAATTGTTNTCAGCGTGTGAAATCCTCGTCACCATGAAACAATGGGTAGTCGATTCAAATTGTTGCATCACCCCTGAGTTAGATCAGATTCCGNTGGNTGTGAGCNACACTACCTGGNNTTACTNCATTATCTGGTACACATATGCCAGNCAGATCTGATAAATAATGGNGTTGTTTTTTTTCGATACTNCCTTGGNTATTATAGCTAATACTGACTCATCTCTACTTGTCATAAACTCATTT] [+] EMBL CD082012 [AGTCAATCAATGCGACAGACTCAAAAGCAAACAATAGAAAAGACTCTGTCACATTTAAATAATAAACCTCCGCTTATATTTTGGCATACTGACCTACGACAAGTTCCTGAAAATTTCTCATTTTTTATAGGTCACGAATTTTTTGATGTGCTTCCAGTTCACCGTTTTCAGAAGCATGAAGGAAAATGGCACGAAGTTTTAGTTAGCTCTATGATGAATTCTAATAGTTTATGTTTTGTACGTTCAGGCACAAAAACTCCAGCATCAATAGTATATCTCCCGTTAGTTCCTAATCTGTCGAACCGAGACTCTGTGGAAGTCTGTCCTGATATGATATGTGTCGCACAATTATTATGCAAACGAATTAATAAAACGGGTGGTAGTGCACTATTGATTGATTATGGTCATGAAGGTGAAAAAGGTGATNACATTTCGTGGTTTTCATAAACACTCAGTTTGTGATCCTCTCATCAATCCTGGTCACACTGATCTAACATGTGATGTTGATTTTAGTATTTTATGTCATGCAGTCAAAAACTCCGATGCTAAAGTAAGACTTCATGGCCCTGTAACTCAAGCTTATTTTCTTATCAATATGGGTTTATTCACCCGATTAAAGGTTTTATTGTCTAAATGTGAATCAGAAACACANAAGATGAATTGTTNTCAGCGTGTGAAATCCTCGTCACCATGAAACAATGGGTAGTCGATTCAAATTGTTGCATCACCCCTGAGTTAGATCAGATTCCGNTGGNTGTGAGCNACACTACCTGGNNTTACTNCATTATCTGGTACACATATGCCAGNCAGATCTGATAAATAATGGNGTTGTTTTTTTTCGATACTNCCTTGGNTATTATAGCTAATACTGACTCATCTCTACTTGTCATAAACTCATTT] consensusID : consensus_4151#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 622 fasta sequence [AAGTCTGTCCTGATATGATATGTGTCGCACAATTATTATGCAAACGAATTAATAAAACGGGTGGTAGTGCACTATTGATTGATTATGGTCATGAAGGTGAAAAAGGTGATACATTTCGTGGTTTTCATAAACACTCAGTTTGTGATCCTCTCATCAATCCTGGTCACACTGATCTAACATGTGATGTTGATTTTAGTATTTTATGTCATGCAGTCAAAAACTCCGATGCTAAAGTAAGACTTCATGGCCCTGTAACTCAAGCTTATTTTCTTATCAATATGGGTTTATTCACCCGATTAAAGGTTTTATTGTCTAAATGTGAATCAGAACAACAAAAAGATGAATTGTTTTCAGCGTGTGAAATCCTCGTCACCAATGAACAAATGGGTAGTCGATTCAAATTTGTTGCAATCACCCCTGAGTTAGAATCAGATTCCGTTGGTTGTGAGCAACAACTACCTGGTTTTACTCCATTATCTGGTACACCATATGCACAGTCAGATTCTGTATAAATAATGTGTTGTTTTTTTTCGTATAACTTCCCTTGTTTATTTATCAGCTAAATTACTGAACTCAATCTCCTAACTTTGTACATATAAACCTCAAATATATATTTTTTATT] [-] EMBL CD075627 [AAGTCTGTCCTGATATGATATGTGTCGCACAATTATTATGCAAACGAATTAATAAAACGGGTGGTAGTGCACTATTGATTGATTATGGTCATGAAGGTGAAAAAGGTGATACATTTCGTGGTTTTCATAAACACTCAGTTTGTGATCCTCTCATCAATCCTGGTCACACTGATCTAACATGTGATGTTGATTTTAGTATTTTATGTCATGCAGTCAAAAACTCCGATGCTAAAGTAAGACTTCATGGCCCTGTAACTCAAGCTTATTTTCTTATCAATATGGGTTTATTCACCCGATTAAAGGTTTTATTGTCTAAATGTGAATCAGAACAACAAAAAGATGAATTGTTTTCAGCGTGTGAAATCCTCGTCACCAATGAACAAATGGGTAGTCGATTCAAATTTGTTGCAATCACCCCTGAGTTAGAATCAGATTCCGTTGGTTGTGAGCAACAACTACCTGGTTTTACTCCATTATCTGGTACACCATATGCACAGTCAGATTCTGTATAAATAATGTGTTGTTTTTTTTCGTATAACTTCCCTTGTTTATTTATCAGCTAAATTACTGAACTCAATCTCCTAACTTTGTACATATAAACCTCAAATATATATT ] [-] EMBL CD076885 [ GAATCAGATTCCGTTGGTTGTGAGCAACAACTACCTGGTTTTACTCCATTATCTGGTACCCCATATGCACAGTCAGATTCTGTATAAATAATGTGTTGTTTTTTTTCGTATAACTTCCCTTGTTTATTTATCAGCTAAATTACTGAACTCAATCTCCTAACTTTGTACATATAACCCTCAAATATATATTTTTTATT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_4151#0 AGTCAATCAATGCGACAGACTCAAAAGCAAACAATAGAAAAGACTCTGTCACATTTAAAT 60 consensus_4151#1 ------------------------------------------------------------ consensus_4151#0 AATAAACCTCCGCTTATATTTTGGCATACTGACCTACGACAAGTTCCTGAAAATTTCTCA 120 consensus_4151#1 ------------------------------------------------------------ consensus_4151#0 TTTTTTATAGGTCACGAATTTTTTGATGTGCTTCCAGTTCACCGTTTTCAGAAGCATGAA 180 consensus_4151#1 ------------------------------------------------------------ consensus_4151#0 GGAAAATGGCACGAAGTTTTAGTTAGCTCTATGATGAATTCTAATAGTTTATGTTTTGTA 240 consensus_4151#1 ------------------------------------------------------------ consensus_4151#0 CGTTCAGGCACAAAAACTCCAGCATCAATAGTATATCTCCCGTTAGTTCCTAATCTGTCG 300 consensus_4151#1 ------------------------------------------------------------ consensus_4151#0 AACCGAGACTCTGTGGAAGTCTGTCCTGATATGATATGTGTCGCACAATTATTATGCAAA 360 consensus_4151#1 ----------------AAGTCTGTCCTGATATGATATGTGTCGCACAATTATTATGCAAA 44 ******************************************** consensus_4151#0 CGAATTAATAAAACGGGTGGTAGTGCACTATTGATTGATTATGGTCATGAAGGTGAAAAA 420 consensus_4151#1 CGAATTAATAAAACGGGTGGTAGTGCACTATTGATTGATTATGGTCATGAAGGTGAAAAA 104 ************************************************************ consensus_4151#0 GGTGATNACATTTCGTGGTTTTCATAAACACTCAGTTTGTGATCCTCTCATCAATCCTGG 480 consensus_4151#1 GGTGATA-CATTTCGTGGTTTTCATAAACACTCAGTTTGTGATCCTCTCATCAATCCTGG 163 ****** **************************************************** consensus_4151#0 TCACACTGATCTAACATGTGATGTTGATTTTAGTATTTTATGTCATGCAGTCAAAAACTC 540 consensus_4151#1 TCACACTGATCTAACATGTGATGTTGATTTTAGTATTTTATGTCATGCAGTCAAAAACTC 223 ************************************************************ consensus_4151#0 CGATGCTAAAGTAAGACTTCATGGCCCTGTAACTCAAGCTTATTTTCTTATCAATATGGG 600 consensus_4151#1 CGATGCTAAAGTAAGACTTCATGGCCCTGTAACTCAAGCTTATTTTCTTATCAATATGGG 283 ************************************************************ consensus_4151#0 TTTATTCACCCGATTAAAGGTTTTATTGTCTAAATGTGAATCAGAAACACANAA-GATGA 659 consensus_4151#1 TTTATTCACCCGATTAAAGGTTTTATTGTCTAAATGTGAATCAGAACAACAAAAAGATGA 343 ********************************************** *** ** ***** consensus_4151#0 ATTGTTNTCAGCGTGTGAAATCCTCGTCACCA-TGAAACAATGGGTAGTCGATTCAAATT 718 consensus_4151#1 ATTGTTTTCAGCGTGTGAAATCCTCGTCACCAATGAACAAATGGGTAGTCGATTCAAATT 403 ****** ************************* **** ********************* consensus_4151#0 -GTTGCA-TCACCCCTGAGTTAGA-TCAGATTCCGNTGGNTGTGAGCNACA-CTACCTGG 774 consensus_4151#1 TGTTGCAATCACCCCTGAGTTAGAATCAGATTCCGTTGGTTGTGAGCAACAACTACCTGG 463 ****** **************** ********** *** ******* *** ******** consensus_4151#0 NNTTACTNCATTATCTGGTACAC-ATATGC-CAGNCAGAT-CTG-ATAAATAATGGNGTT 830 consensus_4151#1 TTTTACTCCATTATCTGGTACACCATATGCACAGTCAGATTCTGTATAAATAATG-TGTT 522 ***** *************** ****** *** ***** *** ********** *** consensus_4151#0 GTTTTTTTTCG-ATA--CTNCCTTGGNTATTA--TAGCTAA--TACTGA-CTCA---TCT 879 consensus_4151#1 GTTTTTTTTCGTATAACTTCCCTTGTTTATTTATCAGCTAAATTACTGAACTCAATCTCC 582 *********** *** * ***** **** ****** ****** **** ** consensus_4151#0 CTACTTGTCATAAACTCATTT------------------- 900 consensus_4151#1 TAACTTTGTACATATAAACCTCAAATATATATTTTTTATT 622 **** * * * * * |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||