cluster # 4152

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Schistosoma mansoni
cluster # 4152 cluster # 4152 Sequences # 3 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_4152#0 length = 639 sequences # 2

consensus_4152#1 length = 229 sequences # 1

consensusID : consensus_4152#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 639
fasta sequence

                              [GTTGATTACTTTCAGATTGATGAATATCATCATCGTCACGGTTTTTAGTGTTAGCATGAATACTACTACTACCAGTAGTCATAGTAGTAGTAGTCGTTGGTGCCGGTATTTCATTGTCATTTGTTTTATACACGCTAATATGAAATACAACTTGTCCACCATTTTGTTGATTTGGATAATTAGAGTTAGGTAATAAATCCGGACTGAGTTTAGCTCGAAGTCTAATACATTTCGGCAGATGTAATGCACGAAGGAGTGTTGAGTATTCAGCAAAAGAGTGAGATCCAGAACTCTCCAAAACTAGATGCTTTAAGAGGTTGGCTTTGCTACATTCAGTTATTTTTGATCCTAATTCTGGACTAGTTGCTAACTGTATGAGCTCAGTCAACCGACAATCAATAAAATGTTGTTTCAAAAATCCAACTGTCTCCGTATCGGGAAAAGGGAAACTTTCTTTTACAACTTTTTGTTCATGATCTGTATCATCATTCATAGGTAATTCCAAATCTATTTCAAAATTCAAGATACGAACTGGTCTATTGGAATTAATAGCTTGATCACTGTCCAGTTCAATAACGGATCGAGAATCGCTGGAGATACACCACATCCTGAAACATCAGTATCAAAATCACACATAGT]

[+] EMBL CD156177             [GTTGATTACTTTCAGATTGATGAATATCATCATCGTCACGGTTTTTAGTGTTAGCATGAATACTACTACTACCAGTAGTCATAGTAGTAGTAGTCGTTGGTGCCGGTATTTCATTGTCATTTGTTTTATACACGCTAATATGAAATACAACTTGTCCACCATTTTGTTGATTTGGATAATTAGAGTTAGGTAATAAATCCGGACTGAGTTTAGCTCGAAGTCTAATACATTTCGGCAGATGTAATGCACGAAGGAGTGTTGAGTATTCAGCAAAAGAGTGAGATCCAGAACTCTCCAAAACTAGATGCTTTAAGAGGTTGGCTTTGC                                                                                                                                                                                                                                                                                                                        ]
[+] EMBL CD093835             [                                                                                                                                                                                                                                        CGGCAGATGTAATGCACGAAGGAGTGTTGAGTTGTCAGCAAAAGAGTGAGATCCAGAACTCTCCAAAACCAGATGCTTTAAGAGGTTGGCTTTGCTACATTCAGTTATTTTTGATCCTAATTCTGGACTAGTTGCTAACTGTATGAGCTCAGTCAACCGACAATCAATAAAATGTTGTTTCAAAAATCCAACTGTCTCCGTATCGGGAAAAGGGAAACTTTCTTTTACAACTTTTTGTTCATGATCTGTATCATCATTCATAGGTAATTCCAAATCTATTTCAAAATTCAAGATACGAACTGGTCTATTGGAATTAATAGCTTGATCACTGTCCAGTTCAATAACGGATCGAGAATCGCTGGAGATACACCACATCCTGAAACATCAGTATCAAAATCACACATAGT]




>consensus_4152#0
GTTGATTACTTTCAGATTGATGAATATCATCATCGTCACGGTTTTTAGTGTTAGCATGAA
TACTACTACTACCAGTAGTCATAGTAGTAGTAGTCGTTGGTGCCGGTATTTCATTGTCAT
TTGTTTTATACACGCTAATATGAAATACAACTTGTCCACCATTTTGTTGATTTGGATAAT
TAGAGTTAGGTAATAAATCCGGACTGAGTTTAGCTCGAAGTCTAATACATTTCGGCAGAT
GTAATGCACGAAGGAGTGTTGAGTATTCAGCAAAAGAGTGAGATCCAGAACTCTCCAAAA
CTAGATGCTTTAAGAGGTTGGCTTTGCTACATTCAGTTATTTTTGATCCTAATTCTGGAC
TAGTTGCTAACTGTATGAGCTCAGTCAACCGACAATCAATAAAATGTTGTTTCAAAAATC
CAACTGTCTCCGTATCGGGAAAAGGGAAACTTTCTTTTACAACTTTTTGTTCATGATCTG
TATCATCATTCATAGGTAATTCCAAATCTATTTCAAAATTCAAGATACGAACTGGTCTAT
TGGAATTAATAGCTTGATCACTGTCCAGTTCAATAACGGATCGAGAATCGCTGGAGATAC
ACCACATCCTGAAACATCAGTATCAAAATCACACATAGT

consensusID : consensus_4152#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 229
fasta sequence

                              [CGAAATGTATTAAACTTCGAGCTAAACTCAGTCCGGATTTATTACCTAACTCGTAAGTGTTTATTTCATCATGCTTTTCATTTTCATCCCTGAAATAAATCAACATGCGTTTACTCTTTCCCTAGTTTCGTCATGCGTTAGATACATGTAAACCGCAAACAAGTACTTTTTCTCTTTTCAATTAGTTAATAATTACTATTCACAATTACGCACATACATAAATGCACAT]

[+] EMBL CD201242             [CGAAATGTATTAAACTTCGAGCTAAACTCAGTCCGGATTTATTACCTAACTCGTAAGTGTTTATTTCATCATGCTTTTCATTTTCATCCCTGAAATAAATCAACATGCGTTTACTCTTTCCCTAGTTTCGTCATGCGTTAGATACATGTAAACCGCAAACAAGTACTTTTTCTCTTTTCAATTAGTTAATAATTACTATTCACAATTACGCACATACATAAATGCACAT]




>consensus_4152#1
CGAAATGTATTAAACTTCGAGCTAAACTCAGTCCGGATTTATTACCTAACTCGTAAGTGT
TTATTTCATCATGCTTTTCATTTTCATCCCTGAAATAAATCAACATGCGTTTACTCTTTC
CCTAGTTTCGTCATGCGTTAGATACATGTAAACCGCAAACAAGTACTTTTTCTCTTTTCA
ATTAGTTAATAATTACTATTCACAATTACGCACATACATAAATGCACAT

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_4152#0      GTTGATTACTTTCAGATTGATGAATATCATCATCGTCACGGTTTTTAGTGTTAGCATGAA 60
consensus_4152#1      ------------------------------------------------------------
                                                                                  

consensus_4152#0      TACTACTACTACCAGTAGTCATAGTAGTAGTAGTCGTTGGTGCCGGTATTTCATTGTCAT 120
consensus_4152#1      -------------------CGAAAT-GTATTAAAC-TTCGAGCTAA-ACTCAGTCCGGAT 38
                                         *  * * *** **  * ** * **    * *   *    **

consensus_4152#0      TTGTTTTATA-CACGCTAATATGAAATACAACTTGTCCACCATTTTGTTGATTTGGATAA 179
consensus_4152#1      TTATTACCTAACTCGTAAGTGTTTATTTCATCATGCTTTTCATTTTCATCCCTGAAATAA 98
                      ** **   ** * **  * * *  * * ** * **     ******  *   *   ****

consensus_4152#0      TTAGAGTTAGGTAATAAATCCGGACTGAGTTTAGCTCGAAGTCTAATACATTTCGGCAGA 239
consensus_4152#1      ATCAA--CATGCGTTTACTCTTTCCCTAGTTTCGTCATGCGTTAGATACA---------- 146
                       *  *   * *   * * **    *  ***** *      **   *****          

consensus_4152#0      TGTAATGCACGAAGGAGTGTTGAGTATTCAGCAAAAGAGTGAGATCCAGAACTCTCCAAA 299
consensus_4152#1      TGTAAACCGCAAACAAGTACTTTTTCTCTTTTCAATTAGTTAA--TAATTACTATTCACA 204
                      *****  * * **  ***  *   * *      **  *** *     *  *** * ** *

consensus_4152#0      ACTAGATGCTTTAAGAGGTTGGCTTTGCTACATTCAGTTATTTTTGATCCTAATTCTGGA 359
consensus_4152#1      ATTACGCACATACATAAATGCACAT----------------------------------- 229
                      * **    * *  * *  *   * *                                   

consensus_4152#0      CTAGTTGCTAACTGTATGAGCTCAGTCAACCGACAATCAATAAAATGTTGTTTCAAAAAT 419
consensus_4152#1      ------------------------------------------------------------
                                                                                  

consensus_4152#0      CCAACTGTCTCCGTATCGGGAAAAGGGAAACTTTCTTTTACAACTTTTTGTTCATGATCT 479
consensus_4152#1      ------------------------------------------------------------
                                                                                  

consensus_4152#0      GTATCATCATTCATAGGTAATTCCAAATCTATTTCAAAATTCAAGATACGAACTGGTCTA 539
consensus_4152#1      ------------------------------------------------------------
                                                                                  

consensus_4152#0      TTGGAATTAATAGCTTGATCACTGTCCAGTTCAATAACGGATCGAGAATCGCTGGAGATA 599
consensus_4152#1      ------------------------------------------------------------
                                                                                  

consensus_4152#0      CACCACATCCTGAAACATCAGTATCAAAATCACACATAGT 639
consensus_4152#1      ----------------------------------------