These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_4156#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 871 fasta sequence [CAATCGATAGAGATGATGGTGATGGATGCTCGGCGAATAAAGCAAATAATGGAGAGATCACAGCAACCACTACTACTACTACTGGCTCCGGTGGTGGGGGTGATACTGTAATACCTCTGAATACAACACCTACTCCACAGTTGGTTAGTTGTACTTCTAGTGCTGAATTGAAAAGACTACAATTAACGAAGGAGGAAGGAAATCTAACAGCTGGAGAAGAACAAATAATGATGGCTCATTATCATTATACTGGTGCAACAAGTAGTATACATCCATTATTATCATCGTCTGTTAAATATGCACAACCTGTAAAATTTCAAGGATTTGATGTTGCAGAAGACGAGAATATTCATCATCATATGTCTTCATTCAGTGAAACAGTGGCATTGGGATTGTTAAAGAATCAAGCAATAGAATTTGTCAATTATAATAAACGTCAAATGAGTAGAATTTATCCTAGAGGAAATCGTGTCGATTCAAGCAATTATATGCCACAAATATTTTGGAATGCTGGTTGTCAAATGGTTGCGTTGAATTTTCAAACCCCCGATTTAGCCATGCAGTTGAACCAAGGGAAGTTCGAATACAATGGTAATTGTGGTTATTTACTAAAACCGGAATTTATGCGACGTCCAGAGCGTCAGTTTGATCCATTCTCTGAGTCCCCAATGGATGGTGTTATTGCAGCTACATGTGAAGTGAAAATTATATCAGGACAATTTTTATCAGATCGTAAAGTTGGCACATATGTTGAAGTAGATATGTATGGTTTACCAACAGATACAATTCGTAAAGAATTTCGCACTCGAGTTGTCCCTAATAATGGATTAAATCCAGTGTATGGAGATGATGCTGTTTTTGTATTTAGAAA] [+] EMBL CD111423 [CAATCGATAGAGATGATGGTGATGGATGCTCGGCGAATAAAGCAAATAATGGAGAGATCACAGCAACCACTACTACTACTACTGGCTCCGGTGGTGGGGGTGATACTGTAATACCTCTGAATACAACACCTACTCCACAGTTGGTTAGTTGTACTTCTAGTGCTGAATTGAAAAGACTACAATTAACGAAGGAGGAAGGAAATCTAACAGCTGGAGAAGAACAAATAATGATGGCTCATTATCATTATACTGGTGCAACAAGTAGTATACATCCATTATTATCATCGTCTGTTAAAT ] [+] EMBL CD066092 [ TCATTATCATTATACTGGTGCAACAAGTAGTATACATCCATTATTATCATCGTTTGTTAATTATGCACAACCTGTAAAATTTCAAGGATTTGATGTTGCAGAAGACGAGAATATTCATCATCATATGTCTTCATTCAGTGAAACAGTGGCATTGGGATTGTTAAAGAATCAAGCAATAGAATTTGTCAATTATAATAAACGTCAAATGAGTAGAATTTATCCTAGAGGAAATCGTGTCGATTCAAGCAATTATATGCCACAAATATTTTGGAATGCTGGTTGTCAAATGGTTGCGTTGAATTTTCAAACCCCCGATTTAGCCATGCAGTTGAACCAAGGGAAGTTCGAATACAATGGTAATTGTGGTTATTTACTAAAACCGGAATTTATGCGACGTCCAGAGCGTCAGTTTGATCCATTCTCTGAGTCCCCAATGGATGGTGTTATTGCAGCTACATGTGAAGTGAAAATTATATCAGGACAATTTTTATCAGATCGTAAAGTTGGCACATATGTTGAAGTAGATATGTATGGTTTACCAACAGATACAATTCGTAAAGAATTTCGCACTCGAGTTGTCCCTAATAATGGATTAAATCCAGTGTATGGAGATGATGCTGTTTTTGTATTTAGAAA] consensusID : consensus_4156#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 559 fasta sequence [TGGTGGGGGTGATACTGTAATACCTCTGAATACAACACCTACTCCACAGTTGGTTAGTTGTACTTCTAGTGCTGAATTGAAAAGACTACAATTAAAGAAGGAGGAAGGAAATTTAACAGCTGAAGAAGAACAAATAATGATGGCTCATTATCATTATACTGGTGCAACAAGTAGTATACATCCATTATTATCATCGTTTGTTAATTATGCACAACCTGTAAAATTTCAAGGATTTGATGTTGCAGAAGACGAGAATATTCATCATCATATGTCTTCATTCAGTGAAACAGTGGCATTGGGATTGTTAAAGAATCAAGCAATAGAATTTGTCAAGTATCCTATTCACTTGATAAGAAAACAGTTTCATGTCATTATTGTCATTTTATTTTGTTTTGAAAAAAAACGAAAGTTTTTCGAGTGTACTTCTGTTAATATTTGCACGCATCTACGTTGTTATTGTAAGGTTTTATTTTAGTACTGCATGTTATATTGTTATCTATTATTTATCGGAATGTTTCAACTAATTCTAATAGGAAGATGTGTATCTGTACCTTGGAGA] [+] EMBL CD187839 [TGGTGGGGGTGATACTGTAATACCTCTGAATACAACACCTACTCCACAGTTGGTTAGTTGTACTTCTAGTGCTGAATTGAAAAGACTACAATTAAAGAAGGAGGAAGGAAATTTAACAGCTGAAGAAGAACAAATAATGATGGCTCATTATCATTATACTGGTGCAACAAGTAGTATACATCCATTATTATCATCGTTTGTTAATTATGCACAACCTGTAAAATTTCAAGGATTTGATGTTGCAGAAGACGAGAATATTCATCATCATATGTCTTCATTCAGTGAAACAGTGGCATTGGGATTGTTAAAGAATCAAGCAATAGAATTTGTCAAGTATCCTATTCACTTGATAAGAAAACAGTTTCATGTCATTATTGTCATTTTATTTTGTTTTGAAAAAAAACGAAAGTTTTTCGAGTGTACTTCTGTTAATATTTGCACGCATCTACGTTGTTATTGTAAGGTTTTATTTTAGTACTGCATGTTATATTGTTATCTATTATTTATCGGAATGTTTCAACTAATTCTAATAGGAAGATGTGTATCTGTACCTTGGAGA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_4156#0 CAATCGATAGAGATGATGGTGATGGATGCTCGGCGAATAAAGCAAATAATGGAGAGATCA 60 consensus_4156#1 ------------------------------------------------------------ consensus_4156#0 CAGCAACCACTACTACTACTACTGGCTCCGGTGGTGGGGGTGATACTGTAATACCTCTGA 120 consensus_4156#1 -------------------------------TGGTGGGGGTGATACTGTAATACCTCTGA 29 ***************************** consensus_4156#0 ATACAACACCTACTCCACAGTTGGTTAGTTGTACTTCTAGTGCTGAATTGAAAAGACTAC 180 consensus_4156#1 ATACAACACCTACTCCACAGTTGGTTAGTTGTACTTCTAGTGCTGAATTGAAAAGACTAC 89 ************************************************************ consensus_4156#0 AATTAACGAAGGAGGAAGGAAATCTAACAGCTGGAGAAGAACAAATAATGATGGCTCATT 240 consensus_4156#1 AATTAAAGAAGGAGGAAGGAAATTTAACAGCTGAAGAAGAACAAATAATGATGGCTCATT 149 ****** **************** ********* ************************** consensus_4156#0 ATCATTATACTGGTGCAACAAGTAGTATACATCCATTATTATCATCGTCTGTTAAATATG 300 consensus_4156#1 ATCATTATACTGGTGCAACAAGTAGTATACATCCATTATTATCATCGTTTGTTAATTATG 209 ************************************************ ****** **** consensus_4156#0 CACAACCTGTAAAATTTCAAGGATTTGATGTTGCAGAAGACGAGAATATTCATCATCATA 360 consensus_4156#1 CACAACCTGTAAAATTTCAAGGATTTGATGTTGCAGAAGACGAGAATATTCATCATCATA 269 ************************************************************ consensus_4156#0 TGTCTTCATTCAGTGAAACAGTGGCATTGGGATTGTTAAAGAATCAAGCAATAGAATTTG 420 consensus_4156#1 TGTCTTCATTCAGTGAAACAGTGGCATTGGGATTGTTAAAGAATCAAGCAATAGAATTTG 329 ************************************************************ consensus_4156#0 TCAATTATAATAAACGTCAAATGAGTAGAATTTATCCTAGAGGAA--ATCGTGTCGATTC 478 consensus_4156#1 TCAAGTATCCTATTCACTTGATAAGAAAACAGTTTCATGTCATTATTGTCATTTTATTTT 389 **** *** ** * ** ** * * * ** * * ** * * ** consensus_4156#0 AAGCAATTATATGCCACAAATATTTTGGAATGCTGGTTGTCAAATGGTTGCGTTGAATTT 538 consensus_4156#1 GTTTTGAAAAAAAACGAAAGT-TTTTCGAGTGTACTTCTGTTAATATTTGCA-------- 440 * * * ** * **** ** ** * *** **** consensus_4156#0 TCAAACCCCCGATTTAGCCATGCAGTTGAACCAAGGGAAGTTCGAATACAATGGTAATTG 598 consensus_4156#1 -CGCATCTACGTTGTTATTGTAAGGTTTTATTTTAGTA---CTGCATGTTATATTGTTAT 496 * * * ** * * * *** * * * * ** ** * * consensus_4156#0 TGGTTATTTACTAAAACCGGAATTTATGCGACGTCCAGAGCGTCAGTTTG-ATCCATTCT 657 consensus_4156#1 CTATTATTTATCGGAAT----GTTTCAACTAATTCTAATAGGAAGATGTGTATCTGTACC 552 ******* ** *** * * ** * * * ** *** * * consensus_4156#0 CTGAGTCCCCAATGGATGGTGTTATTGCAGCTACATGTGAAGTGAAAATTATATCAGGAC 717 consensus_4156#1 TTGGAGA----------------------------------------------------- 559 ** consensus_4156#0 AATTTTTATCAGATCGTAAAGTTGGCACATATGTTGAAGTAGATATGTATGGTTTACCAA 777 consensus_4156#1 ------------------------------------------------------------ consensus_4156#0 CAGATACAATTCGTAAAGAATTTCGCACTCGAGTTGTCCCTAATAATGGATTAAATCCAG 837 consensus_4156#1 ------------------------------------------------------------ consensus_4156#0 TGTATGGAGATGATGCTGTTTTTGTATTTAGAAA 871 consensus_4156#1 ---------------------------------- |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||