These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_4158#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 900 fasta sequence [TATATCAGAAATTGGATAATACTACCAAATCAGTAGCTGTGGATATCCAAGATGTGACATGGCGTTATACACAAAAGTTTTCAGAAGTTCAATCCCGTCGAAATATGATTAGGGAATCCGTATTGGCGTATAAATTAGCGGACATTCACACTGGTGCTGTCAAAAACTGGTCACTTAACAACAATCCGGCCGATATTGACCAAAAACCATACTGTTGGGATTCAATTATTGATGAATTGGTGAGTTTCCTTCATCCTTCAAAGTGTAATGATCAACTTCCGGGTCGTCAAACTGGATCGTTGGAATGGCGTCAAGCTCGTGGTGAACTGGGTCAGACTTCTCTGTCTGTTGAACCACTTCTTAAAGGATCAAAGTGTATTATTACCCCGTCTAATGCGGAACTTCAAAGTGGGATATTTCACTTACGTTATAATTCAGCTTTAAATATTTACCAACGTCCTTATTATTCTAATAATAATAGTAATAATGCAAAAACGGATACCTGATGTATTAGATTATCAATGTTCTACAAATTCACCAAAAGCGATTAATCAAGAGTCAACCAAATTGATTGAAAATGCTCGGAAAACCGGTTTATATGGATGGCAGTCTATGGTCTATCAGTGGAGAAATATTTTTCGAAAGGTGGAACTTGATTGGCACATGGTTTATTTAGCGCGTGAAGAGGACAGTAAACCTTCAGAAGATGGAATAATTATCTGGATGCTTGATTTAAGAAATACTAATTATCGTGTCGGTAAAGTTTCTATATTTACCAATATGGTATGTCATTCAACTGAATGTCATGCTCGTTTGGTACTTTGTTCCGGTGAATATCCGGCAAATAATAGTTGTAGTGGCCCAGAAGAAAATAAAAACCCACCATGTGTGCCTAACTCA] [+] EMBL CD196519 [TATATCAGAAATTGGATAATACTACCAAATCAGTAGCTGTGGATATCCAAGATGTGACATGGCGTTATACACAAAAGTTTTCAGAAGTTCAATCCCGTCGAAATATGATTAGGGAATCCGTATTGGCGTATAAATTAGCGGACATTCACACTGGTGCTGTCAAAAACTGGTCACTTAACAACAATCCGGCCGATATTGACCAAAAACCATACTGTTGGGATTCAATTATTGATGAATTGGTGAGTTTCCTTCATCCTTCAAAGTGTAATGATCAACTTCCGGGTCGTCAAACTGGATCGTTGGAATGGCGTCAAGCTCGTGGTGAACTGGGTCAGACTTCTCTGTCTGTTGAACCACTTCTTAAAGGATCAAAGTGTA ] [+] EMBL BF936037 [ TCGTTGGAATGGCGTCAAGCTCGTGGTGAACTGGGTCAGACTTCTCTGTCTGTTGAACCACTTCTTAAAGGATCAAAGTGTATTATTACCCCGTCTAATGCGGAACTTCAAAGTGGGATATTTCACTTACGTTATAATTCAGCTTTAAATATTTACCAACGTCCTTATTATTCTAATAATAATAGTAATAATGCAAAAACGGATACCTGATGTATTAGATTATCAATGTTCTACAAATTCACCAAAAGCGATTAATCAAGAGTCAACCAAATTGATTGAAAATGCTCGGAAAACCGGTTTATATGGATGGCAGTCTATGGTCTATCAGTGGAGAAATATTTTTCGAAAGGTGGAACTTGATTGGCACATGGTTTATTTAGCGCGTGAAGAGGACAGTAAACCTTCAGAAGATGGAATAATTATCTGGATGCTTGATTTAAGAAATACTAATTATCGTGTCGGTAAAGTTTCTATATTTACCAATATGGTATGTCATTCAACTGAATGTCATGCTCGTTTGGTACTTTGTTCCGGTGAATATCCGGCAAATAATAGTTGTAGTGGCCCAGAAGAAAATAAAAACCCACCATGTGTGCCTAACTCA] consensusID : consensus_4158#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 863 fasta sequence [CATTAATTCGGCACGACGGGGATAATTATCTGGATGCTTGATTTAAGAAATACTAATTATCGTGTCGGTAAAGTTTCTATATTTACCAATATGGTATGTCATTCAACTGAATGTCATGCTCGTTTGGTACTTTGTTCCGGTGAATATCCGGCAAATAATAGTTTGTAGTGGCCCAGAAGAAAATAAAAACCCACCATGTGTGCCTAACTCATGTTTATGTCTTCAACCAGGTTCTGCTTCATTATTCAATTCAGAAGCTATGAGTGGAGCTGATTTTTTGACTTTAAAAGCTCGTCTATGGAATGATGATGAATCTACTGGGAAGCCATCTTCTGTGGCTTGGCAGCAAGCCCAACTATTTCGGCAAAAGGATAGTGATTTTGATACTTGGTCATTGGAATGGAAAGTTGAATTGGTGAAAATTAATGAAACAGTTAATTAAATAGAACTGGAAACGTGAACTGTATTATCGTTTCACGCGCACTTACACACACACACACACATACACAGTGACCTGGTTAACTATGCTGTTTTATTCATGAAGTCTTATATTTAAACAAATGTGTCAATTTTTTTTGGTAATGTAGATAAGTGTAACAGTACGCATATATATATGCATATTACTGTCAAGTTAATTCGTATGTTTCTTTCTTTCTCTCTTGTTTGTTTATCTTTTCATCTCATCTAATCATCCATTCTTTTTATCCCGAATTTTGTTATAATCTCAATCATATCATCTTTTTTTAATACTTAAACTGGGACTATTCTCAAGAATTTCTACTTTCTTATTGGCTGTTGTTTTGAGAACTACTTNCTTCCTTCTTTCTTTTGNTTTCTTGTTCTTTTTGCTAAAGTATTCCCTG] [+] EMBL CD081666 [CATTAATTCGGCACGACGGGGATAATTATCTGGATGCTTGATTTAAGAAATACTAATTATCGTGTCGGTAAAGTTTCTATATTTACCAATATGGTATGTCATTCAACTGAATGTCATGCTCGTTTGGTACTTTGTTCCGGTGAATATCCGGCAAATAATAGTTTGTAGTGGCCCAGAAGAAAATAAAAACCCACCATGTGTGCCTAACTCATGTTTATGTCTTCAACCAGGTTCTGCTTCATTATTCAATTCAGAAGCTATGAGTGGAGCTGATTTTTTGACTTTAAAAGCTCGTCTATGGAATGATGATGAATCTACTGGGAAGCCATCTTCTGTGGCTTGGCAGCAAGCCCAACTATTTCGGCAAAAGGATAGTGATTTTGATACTTGGTCATTGGAATGGAAAGTTGAATTGGTGAAAATTAATGAAACAGTTAATTAAATAGAACTGGAAACGTGAACTGTATTATCGTTTCACGCGCACTTACACACACACACACACATACACAGTGACCTGGTTAACTATGCTGTTTTATTCATGAAGTCTTATATTTAAACAAATGTGTCAATTTTTTTTGGTAATGTAGATAAGTGTAACAGTACGCATATATATATGCATATTACTGTCAAGTTAATTCGTATGTTTCTTTCTTTCTCTCTTGTTTGTTTATCTTTTCATCTCATCTAATCATCCATTCTTTTTATCCCGAATTTTGTTATAATCTCAATCATATCATCTTTTTTTAATACTTAAACTGGGACTATTCTCAAGAATTTCTACTTTCTTATTGGCTGTTGTTTTGAGAACTACTTNCTTCCTTCTTTCTTTTGNTTTCTTGTTCTTTTTGCTAAAGTATTCCCTG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_4158#0 TATATCAGAAATTGGATAATACTACCAAATCAGTAGCTGTGGATATCCAAGATGTGACAT 60 consensus_4158#1 -----CATTAATTCGGCACGACGG--GGATAATTATCT--GGATGCTTGATTTAAGAAAT 51 ** **** * * ** ** * ** ** **** * * ** ** consensus_4158#0 GGCGTTATACACAAAAGTTTTCAGAAGTTCAATCCCGTCGAAATATGATTAGGGAATCCG 120 consensus_4158#1 ACTAATTATCGT----GTCGGTAAAGTTTCTATATT-TACCAATATGGT-ATGTCATTCA 105 * * ** * * *** ** * ****** * * * ** * consensus_4158#0 TATTGGCGTATAAATTAGCGGACA-TTCACACTGGTGC-TGTCAAAAACTGGTCACTTAA 178 consensus_4158#1 ACTGAATGTCATGCTCGTTTGGTACTTTGTTCCGGTGAATATCCGGCAAATAATAGTTTG 165 * ** * * * ** * **** * ** * * ** consensus_4158#0 CAACAATCCGGCCGATATTGACCAAAAACCATACTGTTGGGATTCAATTATTGATGAATT 238 consensus_4158#1 TAGTGGCCCAGAAGAAAATAAAAACCCACCATGTGTGCCTAACTCA--TGTTTATGTCTT 223 * ** * ** * * * * ***** * *** * ** *** ** consensus_4158#0 -GGTGAGTTTC--CTTCATCCTTCAA----AGTGTAATGA------TCAACTTCCGGGTC 285 consensus_4158#1 CAACCAGGTTCTGCTTCATTATTCAATTCAGAAGCTATGAGTGGAGCTGATTTTTTGACT 283 ** *** ****** ***** * **** * ** * consensus_4158#0 GTCAAACTGGATCGTTGGAATGGCG-TCAAGCTCGTGGTGAACTGGGTCA---GACTTCT 341 consensus_4158#1 TTAAAAGCTCGTCTATGGAATGATGATGAATCTACTGGGAAGCCATCTTCTGTGGCTTGG 343 * *** ** ******* * * ** ** *** * * * * *** consensus_4158#0 CTGTCTGTTGAACCACTTCTTAAAGGATCAAAGTGTATTATTACCCCGTC--TAATGCGG 399 consensus_4158#1 CAGCAAGCCCAACTATTTCGGCAAAAGGATAGTGATTTTGATACTTGGTCATTGGAATGG 403 * * * *** * *** ** * * ** *** *** * ** consensus_4158#0 AACTTCAAAGTGGGATATTTCACTTACGTTATAATTCAGCTTTAAATATTTACCAACGTC 459 consensus_4158#1 AAAGTTGAATTGGTGAAAATTAATGAAACAGTTAATTAAATAGAACTGGA-AACGTGAAC 462 ** * ** *** * * * * * * * * * * ** * * * * consensus_4158#0 CTTATTATTCTAATAATAATAGTAATA-ATGCAAAAACGGATACCTGATGTATTAGATTA 518 consensus_4158#1 TGTATTATCGTTTCACGCGCACTTACACACACACACACACATACACAGTG-ACCTGGTTA 521 ****** * * * * * * * ** * ** **** ** * * *** consensus_4158#0 TCAATGTTCTACAAATTCACCAAAAGCGAT---TAATCAA--GAGTCAACCAAATTGATT 573 consensus_4158#1 ACTATGCTGTTTTA-TTCATGAAGTCTTATATTTAAACAAATGTGTCAATTTTTTTTGGT 580 * *** * * * **** ** ** *** *** * ***** ** * consensus_4158#0 GAAAATGCTCGGAAAACCGGTTTATATGGATGGCAGTCTATGGTCTATCAGTGGAGAAAT 633 consensus_4158#1 AATGTAGATAAGTGTAACAGTACGCATATATATATGCATATTACTGTCAAGTTAATTCGT 640 * * * * * * ** ** ** * *** *** * * consensus_4158#0 ATTTTTCGAAAGGTGGAACTTGATTGGCACATGGTTTATTTAGCGCGTGAAGAGGACAGT 693 consensus_4158#1 ATGTTTCTTTCTTTCTCTCTTGTTTGTTTATCTTTTCATCTCATCTAATCATCCATTCTT 700 ** **** * **** *** ** ** * * * consensus_4158#0 AAACCTTCAGAAGATGGAATAATTATCTGGATGCTTGATTTAAGAAATACT--AATTATC 751 consensus_4158#1 TTTATCCCGAATTTTGTTATAATCTCAATCATATCATCTTTTTTTAATACTTAAACTGGG 760 * * ** ***** ** *** ****** ** * consensus_4158#0 GTGTCGGTAAAGTTTCTATATTTACCAATATGGTATGTCATTCAACTGAATGTCATGCTC 811 consensus_4158#1 ACTATTCTCAAGAATTTCTACTTTCT--TATTGGCTGTTGTTTTGAGAACTACTTNCTTC 818 * *** * * ** ** * *** * *** ** * * ** consensus_4158#0 GTTTGGTACTTTGTTCCGGTGAATATCCGGCAAATAATAGTTGTAGTGGCCCAGAAGAAA 871 consensus_4158#1 CTTCTTTCTTTTGNTTTCTTGTTCTTTTTGCTAA-AGTATTCCCTG-------------- 863 ** * **** * ** * ** ** * ** * * consensus_4158#0 ATAAAAACCCACCATGTGTGCCTAACTCA 900 consensus_4158#1 ----------------------------- |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||