cluster # 4159

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Schistosoma mansoni
cluster # 4159 cluster # 4159 Sequences # 3 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_4159#0 length = 563 sequences # 2

consensus_4159#1 length = 149 sequences # 1

consensusID : consensus_4159#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 563
fasta sequence

                              [CCGTCAACACCAATGCAAACAGGTACGTATCCCATTTTCATTTCACTCCGTCTCAACACACAACACCACACATCTCACACATATCCACATTTTCACTCGAACAATCAACAACTCGATCATTCACTCATTCAATCACACACTCAATCACTCCTACAATCTATTACACAATCAATTTATCAACCACTCACACACTCACTCTCACATTCCCACATGCTCACACACTCACACACAACAACACTCACACACAACCATCCTACATTCTCCACTAGCCTCCTAACCAACTAAACTACTCCATCACCAACACACTCAATTCCAATCAACACACAAACAATCGAATCACACCACTCACATCTGCAACATACACTATCCATCACTCACTACAATCACACTCCTATAAACACTGACTCCAAACGCGTCACGCATTCACACACATACACACACATAATTACTCACTCACACGCTCAATCACTCACTCACTCACTCAATCGATCACTCAATCAATCAATCACTCAATCACACACTCACTCATTTCATCAGTCACTCAGTCAATCACTCAATCCATC]

[+] EMBL CD166310             [CCGTCAACACCAATGCAAACAGGTACGTATCCCATTTTCATTTCACTCCGTCTCAACACACAACACCACACATCTCACACATATCCACATTTTCACTCGAACAATCAACAACTCGATCATTCACTCATTCAATCACACACTCAATCACTCCTACAATCTATTACACAATCAATTTATCAACCACTCACACACTCACTCTCACATTCCCACATGCTCACACACTCACACACAACAACACTCACACACAACCATCCTACATTCTCCACTAGCCTCCTAACCAACTAAACTACTCCATCACCAACACACTCAATTCCAATCAACACACAAACAATCGAATCACACCACTCACATCTGCAACATACACTATCCATCACTCACTACAATCACACTCCTATAAACACTGACTCCAAACGCGTCACGCATTCACACACATACACACACATAATTACTCACTCACACGCTCAATCACTCACTCACTCACTCAATCGATCACTCAATCAATCAATCACTCAA                                                  ]
[+] EMBL CD136157             [                                                                                                                                                                                                                                                                                                                                                        CTCACATCTGCAACATACACTATCCATCACTCACTACAATCACACTCCTATAAACACTGACTCCAAACGCGTCACGCATTCACACACATACACACACATAATTACTCACTCACACGCTCAATCACTCACTCACTCACTCAATCGATCACTCAATCAATCAATCACTCAATCACACACTCACTCATTTCATCAGTCACTCAGTCAATCACTCAATCCATC]




>consensus_4159#0
CCGTCAACACCAATGCAAACAGGTACGTATCCCATTTTCATTTCACTCCGTCTCAACACA
CAACACCACACATCTCACACATATCCACATTTTCACTCGAACAATCAACAACTCGATCAT
TCACTCATTCAATCACACACTCAATCACTCCTACAATCTATTACACAATCAATTTATCAA
CCACTCACACACTCACTCTCACATTCCCACATGCTCACACACTCACACACAACAACACTC
ACACACAACCATCCTACATTCTCCACTAGCCTCCTAACCAACTAAACTACTCCATCACCA
ACACACTCAATTCCAATCAACACACAAACAATCGAATCACACCACTCACATCTGCAACAT
ACACTATCCATCACTCACTACAATCACACTCCTATAAACACTGACTCCAAACGCGTCACG
CATTCACACACATACACACACATAATTACTCACTCACACGCTCAATCACTCACTCACTCA
CTCAATCGATCACTCAATCAATCAATCACTCAATCACACACTCACTCATTTCATCAGTCA
CTCAGTCAATCACTCAATCCATC

consensusID : consensus_4159#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 149
fasta sequence

                              [ACACGCCCCTATAAACACTGACTAGCCTCCTAACCAACTAAACTACTCCATCAACAACACACTCAATTCCAATCAACACACAAACAATCGAATCACACCACTCACATCTGCAACATACACTATCCATCACTCACTACAATCACACTCCT]

[-] EMBL CD087178             [ACACGCCCCTATAAACACTGACTAGCCTCCTAACCAACTAAACTACTCCATCAACAACACACTCAATTCCAATCAACACACAAACAATCGAATCACACCACTCACATCTGCAACATACACTATCCATCACTCACTACAATCACACTCCT]




>consensus_4159#1
ACACGCCCCTATAAACACTGACTAGCCTCCTAACCAACTAAACTACTCCATCAACAACAC
ACTCAATTCCAATCAACACACAAACAATCGAATCACACCACTCACATCTGCAACATACAC
TATCCATCACTCACTACAATCACACTCCT

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_4159#0      CCGTCAACACCAATGCAAACAGGTACGTATCCCATTTTCATTTCACTCCGTCTCAACACA 60
consensus_4159#1      ------------------------------------------------------------
                                                                                  

consensus_4159#0      CAACACCACACATCTCACACATATCCACATTTTCACTCGAACAATCAACAACTCGATCAT 120
consensus_4159#1      ------------------------------------------------------------
                                                                                  

consensus_4159#0      TCACTCATTCAATCACACACTCAATCACTCCTACAATCTATTACACAATCAATTTATCAA 180
consensus_4159#1      ------------------------------------------------------------
                                                                                  

consensus_4159#0      CCACTCACACACTCACTCTCACATTCCCACATGCTCACACACTCACACACAACAACACTC 240
consensus_4159#1      ------------------------------------------------------------
                                                                                  

consensus_4159#0      ACACACAACCATCCTACATTCTCCACTAGCCTCCTAACCAACTAAACTACTCCATCACCA 300
consensus_4159#1      --ACACG-CCCCTATAAACACTG-ACTAGCCTCCTAACCAACTAAACTACTCCATCAACA 56
                        ****  **    ** *  **  ********************************* **

consensus_4159#0      ACACACTCAATTCCAATCAACACACAAACAATCGAATCACACCACTCACATCTGCAACAT 360
consensus_4159#1      ACACACTCAATTCCAATCAACACACAAACAATCGAATCACACCACTCACATCTGCAACAT 116
                      ************************************************************

consensus_4159#0      ACACTATCCATCACTCACTACAATCACACTCCTATAAACACTGACTCCAAACGCGTCACG 420
consensus_4159#1      ACACTATCCATCACTCACTACAATCACACTCCT--------------------------- 149
                      *********************************                           

consensus_4159#0      CATTCACACACATACACACACATAATTACTCACTCACACGCTCAATCACTCACTCACTCA 480
consensus_4159#1      ------------------------------------------------------------
                                                                                  

consensus_4159#0      CTCAATCGATCACTCAATCAATCAATCACTCAATCACACACTCACTCATTTCATCAGTCA 540
consensus_4159#1      ------------------------------------------------------------
                                                                                  

consensus_4159#0      CTCAGTCAATCACTCAATCCATC 563
consensus_4159#1      -----------------------