cluster # 4169

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Schistosoma mansoni
cluster # 4169 cluster # 4169 Sequences # 3 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_4169#0 length = 643 sequences # 1

consensus_4169#1 length = 498 sequences # 2

consensusID : consensus_4169#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 643
fasta sequence

                              [TTCTTTGGTTTAGGTAATTAGGTAGCATAAAAGTCTAGGTCATCAACTGGCACTTGAATAATAAATCCTACACAAAAGATTAAATAACTCATAAGAAAATATTTCTGAATGTTTAACTTCATGTGCTGTCCGTGCATTTGTTTGAAAATGCTATTTGTTCCAATTTGATCACTGCATTAGTTCCGTTTATATTTAGTCTTAGGATGCACTGTAAGGTCAAGCTTTGTGTAGTATTCTAAGTTCAGTGTCTAAATTTATAGTACTAAGTCAGTCATAGATTTACATCATCGTAAAGCTAGTTATCTCTGCCAAACCAACTTTACCAAGGTAGTATAAAAAGGAAAAATCTGTACCTCCTTACAACAAATGTGGAATAACAATAACTACTATTTAATACGCTAGAATGGTACACTGATTGTTAAATAACCCTCTCTTAGTCTACCCATTTATTTTTTACAATATTATTGTAGATACAACGGTCCCACAATGAATCCAATTACGAATGCCAAAAATCAGAATTTAATGAATGAAAAGGAGTTATCGCTCGGTCACACAGGGACAGTTAGCAGTTGGCACAGACAATACAAAGATTCGGCTTGGATCTATGTGGGTGGTTTACATTACGATCTTACTGAAGGTGATG]

[+] EMBL CD066256             [TTCTTTGGTTTAGGTAATTAGGTAGCATAAAAGTCTAGGTCATCAACTGGCACTTGAATAATAAATCCTACACAAAAGATTAAATAACTCATAAGAAAATATTTCTGAATGTTTAACTTCATGTGCTGTCCGTGCATTTGTTTGAAAATGCTATTTGTTCCAATTTGATCACTGCATTAGTTCCGTTTATATTTAGTCTTAGGATGCACTGTAAGGTCAAGCTTTGTGTAGTATTCTAAGTTCAGTGTCTAAATTTATAGTACTAAGTCAGTCATAGATTTACATCATCGTAAAGCTAGTTATCTCTGCCAAACCAACTTTACCAAGGTAGTATAAAAAGGAAAAATCTGTACCTCCTTACAACAAATGTGGAATAACAATAACTACTATTTAATACGCTAGAATGGTACACTGATTGTTAAATAACCCTCTCTTAGTCTACCCATTTATTTTTTACAATATTATTGTAGATACAACGGTCCCACAATGAATCCAATTACGAATGCCAAAAATCAGAATTTAATGAATGAAAAGGAGTTATCGCTCGGTCACACAGGGACAGTTAGCAGTTGGCACAGACAATACAAAGATTCGGCTTGGATCTATGTGGGTGGTTTACATTACGATCTTACTGAAGGTGATG]




>consensus_4169#0
TTCTTTGGTTTAGGTAATTAGGTAGCATAAAAGTCTAGGTCATCAACTGGCACTTGAATA
ATAAATCCTACACAAAAGATTAAATAACTCATAAGAAAATATTTCTGAATGTTTAACTTC
ATGTGCTGTCCGTGCATTTGTTTGAAAATGCTATTTGTTCCAATTTGATCACTGCATTAG
TTCCGTTTATATTTAGTCTTAGGATGCACTGTAAGGTCAAGCTTTGTGTAGTATTCTAAG
TTCAGTGTCTAAATTTATAGTACTAAGTCAGTCATAGATTTACATCATCGTAAAGCTAGT
TATCTCTGCCAAACCAACTTTACCAAGGTAGTATAAAAAGGAAAAATCTGTACCTCCTTA
CAACAAATGTGGAATAACAATAACTACTATTTAATACGCTAGAATGGTACACTGATTGTT
AAATAACCCTCTCTTAGTCTACCCATTTATTTTTTACAATATTATTGTAGATACAACGGT
CCCACAATGAATCCAATTACGAATGCCAAAAATCAGAATTTAATGAATGAAAAGGAGTTA
TCGCTCGGTCACACAGGGACAGTTAGCAGTTGGCACAGACAATACAAAGATTCGGCTTGG
ATCTATGTGGGTGGTTTACATTACGATCTTACTGAAGGTGATG

consensusID : consensus_4169#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 498
fasta sequence

                              [AGAGGGTTACTTTAATTCGTGGTCTCGACAATCAGATACAACGGTCCCACAATGAATCCAATTACGAATGCCAAAAATCAGAATTTAATGAATGAAAAGGAGTTATCGCTCGGTCACACAGGGACAGTTAGCAGTTGGCACAGACAATACAAAGATTCGGCTTGGATCTATGTGGGTGGTTTACATTACGATCTTACTGAAGGTGATGTTATTTGTGTTTTTTCTCAGTATGGTGAAATTGTTAATATCAATTTAGTTCGGGATAAAAAGACAGGTGTATCAAAGGGATTTGCATTCGTGTGTTATGAAGATCAAAGAAGTACTGTTCTAGCTACTGATAATTTAAATGGAATAAAACTAGGAGGCCGTATAATCCGAGTAGACCACGTTGAAAAATATCGAGTACCGAAGGACGGAATTCTGGATGTTGGACATACGGATAAAAAGCCAGAGTACGAACGACCTACTGACTCTGTTTCAGAATTTGTTAAAGAGCAC]

[+] EMBL CD077455             [ GAGGGTTACTTTAATTCGTGGTCTCGACAATCAGATACAACGGTCCCACAATGAATCCAATTACGAATGCCAAAAATCAGAATTTAATGAATGAAAAGGAGTTATCGCTCGGTCACACAGGGACAGTTAGCAGTTGGCACAGACAATACAAAGATTCGGCTTGGATCTATGTGGGTGGTTTACATTACGATCTTACTGAAGGTGATGTTATTTGTGTTTTTTCTCAGTATGGTGAAATTGT                                                                                                                                                                                                                                                                ]
[-] EMBL CD141775             [attaaGTTACTNTAATTCGTGGTCTCGACAATCAGATACAACGGTCCCACAATGAATCCAATTACGAATGCCAAAAATCAGAATTTAATGAATGAAAAGGAGTTATCGCTCGGTCACACAGGGACAGTTAGCAGTTGGCACAGACAGTACAAAGATTCGGCTTGGATCTATGTGGGTGGTTTACATTACGATCTTACTGAAGGTGATGTTATTTGTGTTTTTTCTCAGTATGGTGAAATTGTTAATATCAATTTAGTTCGGGATAAAAAGACAGGTGTATCAAAGGGATTTGCATTCGTGTGTTATGAAGATCAAAGAAGTACTGTTCTAGCTACTGATAATTTAAATGGAATAAAACTAGGAGGCCGTATAATCCGAGTAGACCACGTTGAAAAATATCGAGTACCGAAGGACGGAATTCTGGATGTTGGACATACGGATAAAAAGCCAGAGTACGAACGACCTACTGACTCTGTTTCAGAATTTGTTAAAGAGCAC]




>consensus_4169#1
AGAGGGTTACTTTAATTCGTGGTCTCGACAATCAGATACAACGGTCCCACAATGAATCCA
ATTACGAATGCCAAAAATCAGAATTTAATGAATGAAAAGGAGTTATCGCTCGGTCACACA
GGGACAGTTAGCAGTTGGCACAGACAATACAAAGATTCGGCTTGGATCTATGTGGGTGGT
TTACATTACGATCTTACTGAAGGTGATGTTATTTGTGTTTTTTCTCAGTATGGTGAAATT
GTTAATATCAATTTAGTTCGGGATAAAAAGACAGGTGTATCAAAGGGATTTGCATTCGTG
TGTTATGAAGATCAAAGAAGTACTGTTCTAGCTACTGATAATTTAAATGGAATAAAACTA
GGAGGCCGTATAATCCGAGTAGACCACGTTGAAAAATATCGAGTACCGAAGGACGGAATT
CTGGATGTTGGACATACGGATAAAAAGCCAGAGTACGAACGACCTACTGACTCTGTTTCA
GAATTTGTTAAAGAGCAC

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_4169#0      TTCTTTGGTTTAGGTAATTAGGTAGCATAAAAGTCTAGGTCATCAACTGGCACTTGAATA 60
consensus_4169#1      ------------------------------------------------------------
                                                                                  

consensus_4169#0      ATAAATCCTACACAAAAGATTAAATAACTCATAAGAAAATATTTCTGAATGTTTAACTTC 120
consensus_4169#1      ----------------------------------------------AGAGGGTTACTTTA 14
                                                                      * * ***  ** 

consensus_4169#0      ATGTGCTGTCCGTGCATTTGTTTGAAAATGCTATTTGTTCCAATTTGATCACTGCATTAG 180
consensus_4169#1      ATTCGTGGTCTCGACAATC------AGATACAACG-GTCCCACAATGA--ATCCAATTAC 65
                      **  *  ***    ** *       * ** * *   ** ***   ***  *    **** 

consensus_4169#0      TTCCGTTTATATTTAGTCTTAGGATGCACTGTAAGGTCAAGCTTTGTGTAGTATTCTAAG 240
consensus_4169#1      GAATGCCAAAAATCAGAATTTA-ATGAATGAAAAGG--AGTTATCGCTCGGTCACACAGG 122
                          *   * * * **  **   *** *    ****  *    * *    **     * *

consensus_4169#0      TTCAGTGTCTAAATTTATAGTACTAAGTCAGTCATAGATTTACATCATCGTAAAGCTAGT 300
consensus_4169#1      GACAGT----TAGCAGTTGGCAC-AGACAATACAAAGATTCGGCTTGGATCTATGTGGGT 177
                        ****     *     * * ** *    *  ** *****    *       * *   **

consensus_4169#0      TATCTCTGCCAAACCAACTTTACC-AAGGTAGTATAAAAAGGAAAAATCTGTACCTCCTT 359
consensus_4169#1      GGTTTACATTA---CGATCTTACTGAAGGTGATGTTA----------TTTGTGTTTTTTC 224
                        * *     *   * *  ****  *****  * * *          * ***   *  * 

consensus_4169#0      ACAACAAATGTGGAATAACAATAACTACTATTTAATACGCTAGAATGGTACACTGATTGT 419
consensus_4169#1      TCAGTATG-GTGAAATTGT--TAATATCAATTTAGTTCGGGATAAAAAGACAG-GTGTAT 280
                       **  *   *** ***     ***   * ***** * **  * **    ***  *  * *

consensus_4169#0      TAAATAACCCTCTCTTAGTCTACCCATTTATTTTTTACAATATTATTGTAGATACAACGG 479
consensus_4169#1      CAAAGGGATTTGCATTCGTGTGTTATGAAGATCAAAGAAGTACTGTTCTAGCTACTGATA 340
                       ***      *   ** ** *          *      * ** * ** *** ***     

consensus_4169#0      TCCCACAATGAATCCAATTACGAATGCCAAAAATCAGAATTTAATGAATGAAAAGGAGTT 539
consensus_4169#1      ATTTAAATGGAATAAAACTAGGAGGCCGTATAATCCGAGTAGACCACGTTGAAAAA---T 397
                          * *  ****  ** ** **   *  * **** ** *  *     *  ***     *

consensus_4169#0      ATCGCTCGGTCACACAGGGACAGTTAGCAGTTGGCACAGACAATACAAAGATTCGGCTTG 599
consensus_4169#1      ATCGAGTACCGAAGGACGGAATTCTGGATGTTGG-ACATACGGATAAAAAGCCAGAGTAC 456
                      ****       *   * ***    * *  ***** *** **     ***     *  *  

consensus_4169#0      GATCTATGTGGGTGGTTTACATTACGATCTTACTGAAGGTGATG 643
consensus_4169#1      GAACGACCTAC-TGACTCTGTTTCAGAATTTGTTAAAGAGCAC- 498
                      ** * *  *   **  *    **  **  **  * ***   *