cluster # 4173

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Schistosoma mansoni
cluster # 4173 cluster # 4173 Sequences # 3 consensus # 3

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_4173#0 length = 989 sequences # 1

consensus_4173#1 length = 477 sequences # 1
consensus_4173#2 length = 364 sequences # 1

consensusID : consensus_4173#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 989
fasta sequence

                              [GGAGCCATTAATTCGGCACGACGCACCTTTGCGAGCTGCAGCATTTCATAATAATCATGATATGGTAAAGTTTTTGCTTTCCTTTGGGGCTGATCCATATCATCAGGATGCCTACGGTCGAACTGCCCTTTACATGTTAGCTTTAGAAGGCCAACTTGATATGGCTGATTTACTTTTACACTGTCCAGCTCCCGGTGCATCATCACGTCCAGGCTCAAGTCGATTAATTGGGGCCAATCCCGTTTTATCAGATGATGAAGGACGTTTCCCACTTCATGTAGTTACATGGCTTGGAAATGTTAATTTCGTTCGTATATTGTTACAGGCTGGAACACCAGTAGATATTCGTGACCGGGAAGGTAGAACACCTTTACAACTTGCAGCATGGCAAGGTCACGCTGAAATATGTCATATATTACTGAATGAAGGAAATGCTCGAGTGGATGTAGTTTGTAGTCAAGGCGCAACAGCTTTATGCATCGCTGCACAAGAAGGTCATTTGGATGTTTGTAAAGTTTTACTCAATGCTAATGCTAATCCATCACAAACTGATTCACATGGACGTACACCATATCGTGTTGCACTGAAAGCAGGACATTTAGAAATATGTAAACTTTTAGAGTTATGTCACTCTAATTTCAATATGGTCAGTAGTCATTGGACAAATAATAGTAATCATGAACTATATCAACACAAACAAATAATCAAAGACTTAAAGAACAGACGTGATTCGGATAAAGTTGCACAGCTTTCAACAATTCTACAACAGAAGTACTCAATAGAAAGTGAACAAATTCCATCAGATAGTCTTGAAAAAATGGATAGNTATGAGATTCATAGATTAAGAAATCAAACGTNTAATCAAAGCGTTTCATCCCATCAACCTATGAATTTATCGAAATGGTAGTTAACTATTTTGGTTGAGTATATGTATTTGATTGGTAGTGTTTGATATAAATTCCACNTANAAATTTTAATATATATTACCT]

[+] EMBL CD081653             [GGAGCCATTAATTCGGCACGACGCACCTTTGCGAGCTGCAGCATTTCATAATAATCATGATATGGTAAAGTTTTTGCTTTCCTTTGGGGCTGATCCATATCATCAGGATGCCTACGGTCGAACTGCCCTTTACATGTTAGCTTTAGAAGGCCAACTTGATATGGCTGATTTACTTTTACACTGTCCAGCTCCCGGTGCATCATCACGTCCAGGCTCAAGTCGATTAATTGGGGCCAATCCCGTTTTATCAGATGATGAAGGACGTTTCCCACTTCATGTAGTTACATGGCTTGGAAATGTTAATTTCGTTCGTATATTGTTACAGGCTGGAACACCAGTAGATATTCGTGACCGGGAAGGTAGAACACCTTTACAACTTGCAGCATGGCAAGGTCACGCTGAAATATGTCATATATTACTGAATGAAGGAAATGCTCGAGTGGATGTAGTTTGTAGTCAAGGCGCAACAGCTTTATGCATCGCTGCACAAGAAGGTCATTTGGATGTTTGTAAAGTTTTACTCAATGCTAATGCTAATCCATCACAAACTGATTCACATGGACGTACACCATATCGTGTTGCACTGAAAGCAGGACATTTAGAAATATGTAAACTTTTAGAGTTATGTCACTCTAATTTCAATATGGTCAGTAGTCATTGGACAAATAATAGTAATCATGAACTATATCAACACAAACAAATAATCAAAGACTTAAAGAACAGACGTGATTCGGATAAAGTTGCACAGCTTTCAACAATTCTACAACAGAAGTACTCAATAGAAAGTGAACAAATTCCATCAGATAGTCTTGAAAAAATGGATAGNTATGAGATTCATAGATTAAGAAATCAAACGTNTAATCAAAGCGTTTCATCCCATCAACCTATGAATTTATCGAAATGGTAGTTAACTATTTTGGTTGAGTATATGTATTTGATTGGTAGTGTTTGATATAAATTCCACNTANAAATTTTAATATATATTACCT]




>consensus_4173#0
GGAGCCATTAATTCGGCACGACGCACCTTTGCGAGCTGCAGCATTTCATAATAATCATGA
TATGGTAAAGTTTTTGCTTTCCTTTGGGGCTGATCCATATCATCAGGATGCCTACGGTCG
AACTGCCCTTTACATGTTAGCTTTAGAAGGCCAACTTGATATGGCTGATTTACTTTTACA
CTGTCCAGCTCCCGGTGCATCATCACGTCCAGGCTCAAGTCGATTAATTGGGGCCAATCC
CGTTTTATCAGATGATGAAGGACGTTTCCCACTTCATGTAGTTACATGGCTTGGAAATGT
TAATTTCGTTCGTATATTGTTACAGGCTGGAACACCAGTAGATATTCGTGACCGGGAAGG
TAGAACACCTTTACAACTTGCAGCATGGCAAGGTCACGCTGAAATATGTCATATATTACT
GAATGAAGGAAATGCTCGAGTGGATGTAGTTTGTAGTCAAGGCGCAACAGCTTTATGCAT
CGCTGCACAAGAAGGTCATTTGGATGTTTGTAAAGTTTTACTCAATGCTAATGCTAATCC
ATCACAAACTGATTCACATGGACGTACACCATATCGTGTTGCACTGAAAGCAGGACATTT
AGAAATATGTAAACTTTTAGAGTTATGTCACTCTAATTTCAATATGGTCAGTAGTCATTG
GACAAATAATAGTAATCATGAACTATATCAACACAAACAAATAATCAAAGACTTAAAGAA
CAGACGTGATTCGGATAAAGTTGCACAGCTTTCAACAATTCTACAACAGAAGTACTCAAT
AGAAAGTGAACAAATTCCATCAGATAGTCTTGAAAAAATGGATAGNTATGAGATTCATAG
ATTAAGAAATCAAACGTNTAATCAAAGCGTTTCATCCCATCAACCTATGAATTTATCGAA
ATGGTAGTTAACTATTTTGGTTGAGTATATGTATTTGATTGGTAGTGTTTGATATAAATT
CCACNTANAAATTTTAATATATATTACCT

consensusID : consensus_4173#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 477
fasta sequence

                              [GTAGGCATCCTGATGATCTGGATCAGCCCCAAAGGAAAGCAAAAACTTTACCATATCATGATTATTATGAAATGCTGCAGCTCGCAAAGGTGTTTGACCATCATAAGAAGCAATATTAATATATGGATGAACCAAATGCGACACATGTAAATGCGAAGGGGTTTGATTTAGCTGCTGTCGTGATTCCGACGATCCTGAATGAGTTGGACTTCTGCAAGTTGAGGGATCGTTAGTTGGATAATTTAACAGAATTTGCACAGCTTTCATATTATTTGCTTGACAAGCTACAAGCAAAGGTGTACGACCAGCATTATCGGTTTCTTCTAAATTCGCCCCGGCGTCTAACAACAGGCGCACCACTTCTTCACAGCATTCATCTCGATTGTCTAAATTTTCTGTAGCAAATTCACCGGTAATCAAATTTTCCACAGCTAAATGTAATGGAGTACAACCTGAATGATCTTTATGTGCTTCATC]

[+] EMBL CD126588             [GTAGGCATCCTGATGATCTGGATCAGCCCCAAAGGAAAGCAAAAACTTTACCATATCATGATTATTATGAAATGCTGCAGCTCGCAAAGGTGTTTGACCATCATAAGAAGCAATATTAATATATGGATGAACCAAATGCGACACATGTAAATGCGAAGGGGTTTGATTTAGCTGCTGTCGTGATTCCGACGATCCTGAATGAGTTGGACTTCTGCAAGTTGAGGGATCGTTAGTTGGATAATTTAACAGAATTTGCACAGCTTTCATATTATTTGCTTGACAAGCTACAAGCAAAGGTGTACGACCAGCATTATCGGTTTCTTCTAAATTCGCCCCGGCGTCTAACAACAGGCGCACCACTTCTTCACAGCATTCATCTCGATTGTCTAAATTTTCTGTAGCAAATTCACCGGTAATCAAATTTTCCACAGCTAAATGTAATGGAGTACAACCTGAATGATCTTTATGTGCTTCATC]




>consensus_4173#1
GTAGGCATCCTGATGATCTGGATCAGCCCCAAAGGAAAGCAAAAACTTTACCATATCATG
ATTATTATGAAATGCTGCAGCTCGCAAAGGTGTTTGACCATCATAAGAAGCAATATTAAT
ATATGGATGAACCAAATGCGACACATGTAAATGCGAAGGGGTTTGATTTAGCTGCTGTCG
TGATTCCGACGATCCTGAATGAGTTGGACTTCTGCAAGTTGAGGGATCGTTAGTTGGATA
ATTTAACAGAATTTGCACAGCTTTCATATTATTTGCTTGACAAGCTACAAGCAAAGGTGT
ACGACCAGCATTATCGGTTTCTTCTAAATTCGCCCCGGCGTCTAACAACAGGCGCACCAC
TTCTTCACAGCATTCATCTCGATTGTCTAAATTTTCTGTAGCAAATTCACCGGTAATCAA
ATTTTCCACAGCTAAATGTAATGGAGTACAACCTGAATGATCTTTATGTGCTTCATC

consensusID : consensus_4173#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 364
fasta sequence

                              [ATCAACACAAACAAATAATCAAAGACTTAAAGAACAGACGTGATTCGGATAAAGTTGCACAGCTTTCAACAATTCTACAACAGAAGTACTCAATAGAAAGTGAACAAATTCCATCAGATAGTCTTGAAAAAATGGATAGTAATGAGATTCATAGATTAAGAAATCAAACGTTAAATCAAAGCGTTTCATCCCATCAACCTATGAATTTATCGAAATTGTATTACGAGGATGATGATCCATATGCAAGACCACCTGAATTATTTACGGTCCGATTTGTTCCATCGAAAACAAATGTAGGTAGTGGAGGACAATTTCAAACCTCCAGCTTACGTGATAACCTTCATATGTCCGAAGTGAAAGGAAA]

[+] EMBL CD192354             [ATCAACACAAACAAATAATCAAAGACTTAAAGAACAGACGTGATTCGGATAAAGTTGCACAGCTTTCAACAATTCTACAACAGAAGTACTCAATAGAAAGTGAACAAATTCCATCAGATAGTCTTGAAAAAATGGATAGTAATGAGATTCATAGATTAAGAAATCAAACGTTAAATCAAAGCGTTTCATCCCATCAACCTATGAATTTATCGAAATTGTATTACGAGGATGATGATCCATATGCAAGACCACCTGAATTATTTACGGTCCGATTTGTTCCATCGAAAACAAATGTAGGTAGTGGAGGACAATTTCAAACCTCCAGCTTACGTGATAACCTTCATATGTCCGAAGTGAAAGGAAA]




>consensus_4173#2
ATCAACACAAACAAATAATCAAAGACTTAAAGAACAGACGTGATTCGGATAAAGTTGCAC
AGCTTTCAACAATTCTACAACAGAAGTACTCAATAGAAAGTGAACAAATTCCATCAGATA
GTCTTGAAAAAATGGATAGTAATGAGATTCATAGATTAAGAAATCAAACGTTAAATCAAA
GCGTTTCATCCCATCAACCTATGAATTTATCGAAATTGTATTACGAGGATGATGATCCAT
ATGCAAGACCACCTGAATTATTTACGGTCCGATTTGTTCCATCGAAAACAAATGTAGGTA
GTGGAGGACAATTTCAAACCTCCAGCTTACGTGATAACCTTCATATGTCCGAAGTGAAAG
GAAA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_4173#0      GGAGCCATTAATTCGGCACGACGCACCTTTGCGAGCTGCAGCATTTCATAATAATCATGA 60
consensus_4173#2      ------------------------------------------------------------
consensus_4173#1      ------------------------------------------------------------
                                                                                  

consensus_4173#0      TATGGTAAAGTTTTTGCTTTCCTTTGGGGCTGATCCATATCATCAGGATGCCTACGGTCG 120
consensus_4173#2      ------------------------------------------------------------
consensus_4173#1      ------------------------------------------------------------
                                                                                  

consensus_4173#0      AACTGCCCTTTACATGTTAGCTTTAGAAGGCCAACTTGATATGGCTGATTTACTTTTACA 180
consensus_4173#2      ------------------------------------------------------------
consensus_4173#1      ------------------------------------------------------------
                                                                                  

consensus_4173#0      CTGTCCAGCTCCCGGTGCATCATCACGTCCAGGCTCAAGTCGATTAATTGGGGCCAATCC 240
consensus_4173#2      ------------------------------------------------------------
consensus_4173#1      ------------------------------------------------------------
                                                                                  

consensus_4173#0      CGTTTTATCAGATGATGAAGGACGTTTCCCACTTCATGTAGTTACATGGCTTGGAAATGT 300
consensus_4173#2      ------------------------------------------------------------
consensus_4173#1      ------------------------------------------------------------
                                                                                  

consensus_4173#0      TAATTTCGTTCGTATATTGTTACAGGCTGGAACACCAGTAGATATTCGTGACCGGGAAGG 360
consensus_4173#2      ------------------------------------------------------------
consensus_4173#1      ------------------------------------------------------------
                                                                                  

consensus_4173#0      TAGAACACCTTTACAACTTGCAGCATGGCAAGGTCACGCTGAAATATGTCATATATTACT 420
consensus_4173#2      ------------------------------------------------------------
consensus_4173#1      ------------------------------------------------------------
                                                                                  

consensus_4173#0      GAATGAAGGAAATGCTCGAGTGGATGTAGTTTGTAGTCAAGGCGCAACAGCTTTATGCAT 480
consensus_4173#2      ------------------------------------------------------------
consensus_4173#1      ------------------------------------------------------------
                                                                                  

consensus_4173#0      CGCTGCACAAGAAGGTCATTTGGATGTTTGTAAAGTTTTACTCAATGCTAATGCTAATCC 540
consensus_4173#2      ------------------------------------------------------------
consensus_4173#1      ------------------------------------------------------------
                                                                                  

consensus_4173#0      ATCACAAACTGATTCACATGGACGTACACCATATCGTGTTGCACTGAAAGCAGGACATTT 600
consensus_4173#2      ------------------------------------------------------------
consensus_4173#1      --------------------------GTAGGCATCCTGATGATCTGGATCAGCCCCAAAG 34
                                                                                  

consensus_4173#0      AGAAATATGTAAACTTTTAGAGTTATGTCACTCTAATTTCAATATGGTCAGTAGTCATTG 660
consensus_4173#2      ------------------------------------------------------------
consensus_4173#1      GAAAGCAAAAACTTTACCATATCATGATTATTATGAAATGCTGCAGCTCGCAAAGGTGTT 94
                                                                                  

consensus_4173#0      GACAAATAATAGTAATCATGAACTATATCAACACAAACAAATAATCAAAGACTTAAA--- 717
consensus_4173#2      --------------------------ATCAACACAAACAAATAATCAAAGACTTAAA--- 31
consensus_4173#1      TGACCATCATAAGAAGCAATATTAATATATGGATGAACCAAATGCGACACATGTAAATGC 154
                                                **    *  *** **     * * *  ****   

consensus_4173#0      GAACAGACGTGATTCGGATAAAGTTGCACAGCTTTCAACAATTCTACAACAGAAGTACTC 777
consensus_4173#2      GAACAGACGTGATTCGGATAAAGTTGCACAGCTTTCAACAATTCTACAACAGAAGTACTC 91
consensus_4173#1      GAAGGGGTTTGATTTAGCTGCTGTCGT---GATTCCGACGATCCTGAATGAGTTGGACTT 211
                      ***  *   *****  * *   ** *    * ** * ** ** **  *  **  * *** 

consensus_4173#0      AATAGAAAGTGAACAAATTCCA-TCAGATAGTCTTGAAAAAATGG-ATAGNTATGAGATT 835
consensus_4173#2      AATAGAAAGTGAACAAATTCCA-TCAGATAGTCTTGAAAAAATGG-ATAGTAATGAGATT 149
consensus_4173#1      C-TGCAAGTTGAGGGATCGTTAGTTGGATAATTTAACAGAATTTGCACAGCTTTCATATT 270
                        *  **  ***   *     * *  **** * *   * ** * * * **   * * ***

consensus_4173#0      CATAGATTAAGAAATCAAACGTNTAATCAAAGCGTTTCATCCCATCAA---CCTATGAAT 892
consensus_4173#2      CATAGATTAAGAAATCAAACGTTAAATCAAAGCGTTTCATCCCATCAA---CCTATGAAT 206
consensus_4173#1      ATTTGCTTGACAAGCTACAAGCAAAGGTGTA-CGACCAGCATTATCGGTTTCTTCTAAAT 329
                        * * ** * **   * * *   *     * **         ***     * * * ***

consensus_4173#0      TTATC--GAAATGGTAGT-TAACTATTTTGGTTGAGTATATGTATTTGATTGG-TAGTGT 948
consensus_4173#2      TTATC--GAAATTGTATTACGAGGATGATGATCCA-TATGCAAGACCACCTGAATTATTT 263
consensus_4173#1      TCGCCCCGGCGTCTAACAACAGGCGCACCACTTCTTCACA-GCATTCATCTCGATTGTCT 388
                      *   *  *   *   *               *     *            *   *  * *

consensus_4173#0      TTGATATAAATTCCACNTANAAATTTTAATATATATTACCT------------------- 989
consensus_4173#2      ACGGTCCGATTTGTTCCATCGAAAACAAATGTAGGTAGTGGAGGACAATTTCAAACCTCC 323
consensus_4173#1      AAATTTTCTGTAGCAAATTCACCGGTAATCAAATTTTCCACAGCTAAATGT--AATGGAG 446
                          *     *                *    *  *                        

consensus_4173#0      -----------------------------------------
consensus_4173#2      AGCTTACGTGATAACCTTCATATGTCCGAAGTGAAAGGAAA 364
consensus_4173#1      TACAACCTGAATGATCTTTATGTGCTTCATC---------- 477