These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_4174#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 432 fasta sequence [TAATGTCCGTCATAAGTCCATTGTTGATCGATTGGAGGACATCGATGATGAAATTTTGGAACTGGAAAGTGATCGATCAAGCAGTATAGACTCAGAAAAACAGTTCGTTTTCCGACTGCTTTTCTACTCATTCATATTCTTTGGCTTGAGTTTTATAACGGTTTATTACTACTACTGGCCAAGAACAGTAACCGGGAAGGTGGTGATATGTATGATATTTGCTGTATATCCTTTTTGTATATATTTCCTGAAGTATATTTTTCGGATGATGTTCTCTAGACGCGTAAATAAGACGAATGAGAAACTAAAAAGGCTGCGGGCTGATAAACAAAAATTGTTAGAAGAGGTGATGGAAAAGGAGACGTTCAACAAGGCCCAACAAATCCTCAAACGTTTTGATCCATTAACATTTGCTTCGATAACTGTTGAGGA] [+] EMBL CD150491 [TAATGTCCGTCATAAGTCCATTGTTGATCGATTGGAGGACATCGATGATGAAATTTTGGAACTGGAAAGTGATCGATCAAGCAGTATAGACTCAGAAAAACAGTTCGTTTTCCGACTGCTTTTCTACTCATTCATATTCTTTGGCTTGAGTTTTATAACGGTTTATTACTACTACTGGCCAAGAACAGTAACCGGGAAGGTGGTGATATGTATGATATTTGCTGTATATCCTTTTTGTATATATTTCCTGAAGTATATTTTTCGGATGATGTTCTCTAGACGCGTAAATAAGACGAATGAGAAACTAAAAAGGCTGCGGGCTGATAAACAAAAATTGTTAGAAGAGGTGATGGAAAAGGAGACGTTCAACAAGGCCCAACAAATCCTCAAACGTTTTGATCCATTAACATTTGCTTCGATAACTGTTGAGGA] consensusID : consensus_4174#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 359 fasta sequence [AGATAAAAGCCATAAATAGTATTTTAGGGGTCCAAAAAGTCCATTGTTGATCGATTAGAGGACATCGACGATGTAACTCTTTTGACATTTAATTATCAGTAATTAGGAAATTTTGGAACTGGAAAGTGATCGATCAAGCAGTATAGACTCAGAAAAACAGTTCGTTCTCCGACTGCTTTTCTACTCATTCATATTCTTTGGCTTGAGTCTTATAACGGTTTATTACTACTACTGGCCAAGAACAGTAACCGGGAAGGTGGTGATATGTATGATATTTGCTGTATATCCTTTTTGGTACTTCTATTTAAAGCTGACTAACTTTCTAGTATATATTTCCTGAAGTATATTTTTCGGATGAA] [+] EMBL CD168351 [AGATAAAAGCCATAAATAGTATTTTAGGGGTCCAAAAAGTCCATTGTTGATCGATTAGAGGACATCGACGATGTAACTCTTTTGACATTTAATTATCAGTAATTAGGAAATTTTGGAACTGGAAAGTGATCGATCAAGCAGTATAGACTCAGAAAAACAGTTCGTTCTCCGACTGCTTTTCTACTCATTCATATTCTTTGGCTTGAGTCTTATAACGGTTTATTACTACTACTGGCCAAGAACAGTAACCGGGAAGGTGGTGATATGTATGATATTTGCTGTATATCCTTTTTGGTACTTCTATTTAAAGCTGACTAACTTTCTAGTATATATTTCCTGAAGTATATTTTTCGGATGAA] consensusID : consensus_4174#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 263 fasta sequence [AGCGCCTCTATCAAACTTTATAAAGGTCATGGTTGTGCTGTCGTCCAATGAGCTGGGCTAAGAAATACCTGTTTTGGATCTTCAAGGGGTCCAAAAAGTCCATTGTTGATCGATTGGAGGACATCGATGATGAAATTTTGGAACTGGAAAGTGATCGATCAAGCAGTATAGACTCAGAAAAACAGTTCGTTTTCCGACTGCTTTTCTACTCATTCATATTCTTTGGCTTGAGTTTTATAACGGTTTATTACTACTACTGGCCA] [+] EMBL CD189064 [AGCGCCTCTATCAAACTTTATAAAGGTCATGGTTGTGCTGTCGTCCAATGAGCTGGGCTAAGAAATACCTGTTTTGGATCTTCAAGGGGTCCAAAAAGTCCATTGTTGATCGATTGGAGGACATCGATGATGAAATTTTGGAACTGGAAAGTGATCGATCAAGCAGTATAGACTCAGAAAAACAGTTCGTTTTCCGACTGCTTTTCTACTCATTCATATTCTTTGGCTTGAGTTTTATAACGGTTTATTACTACTACTGGCCA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_4174#0 ------------------------------------------------------------ consensus_4174#1 -----------------------------------------------------------A 1 consensus_4174#2 AGCGCCTCTATCAAACTTTATAAAGGTCATGGTTGTGCTGTCGTCCAATGAGCTGGGCTA 60 consensus_4174#0 ----------------------TAATGTCCGTCATAAGTCCATTGTTGATCGATTGGAGG 38 consensus_4174#1 GATAAAAGCCATAAATAGTATTTTAGGGGTCCAAAAAGTCCATTGTTGATCGATTAGAGG 61 consensus_4174#2 AGAAATACCTGTTTTGGATCTTCAAGGGGTCCAAAAAGTCCATTGTTGATCGATTGGAGG 120 * * * ******************** **** consensus_4174#0 ACATCGATGATG----------------------------------AAATTTTGGAACTG 64 consensus_4174#1 ACATCGACGATGTAACTCTTTTGACATTTAATTATCAGTAATTAGGAAATTTTGGAACTG 121 consensus_4174#2 ACATCGATGATG----------------------------------AAATTTTGGAACTG 146 ******* **** ************** consensus_4174#0 GAAAGTGATCGATCAAGCAGTATAGACTCAGAAAAACAGTTCGTTTTCCGACTGCTTTTC 124 consensus_4174#1 GAAAGTGATCGATCAAGCAGTATAGACTCAGAAAAACAGTTCGTTCTCCGACTGCTTTTC 181 consensus_4174#2 GAAAGTGATCGATCAAGCAGTATAGACTCAGAAAAACAGTTCGTTTTCCGACTGCTTTTC 206 ********************************************* ************** consensus_4174#0 TACTCATTCATATTCTTTGGCTTGAGTTTTATAACGGTTTATTACTACTACTGGCCAAGA 184 consensus_4174#1 TACTCATTCATATTCTTTGGCTTGAGTCTTATAACGGTTTATTACTACTACTGGCCAAGA 241 consensus_4174#2 TACTCATTCATATTCTTTGGCTTGAGTTTTATAACGGTTTATTACTACTACTGGCCA--- 263 *************************** ***************************** consensus_4174#0 ACAGTAACCGGGAAGGTGGTGATATGTATGATATTTGCTGTATATCCTTTTTGTATATAT 244 consensus_4174#1 ACAGTAACCGGGAAGGTGGTGATATGTATGATATTTGCTGTATATCCTTTTTGGTACTTC 301 consensus_4174#2 ------------------------------------------------------------ consensus_4174#0 TTCCTGAAGTATATT---TTTCGGATG-ATGTTCTCTAGACGCGTAAATAAGACGAATGA 300 consensus_4174#1 TATTTAAAGCTGACTAACTTTCTAGTATATATTTCCTGAA---GTATATTTTTCGGATGA 358 consensus_4174#2 ------------------------------------------------------------ consensus_4174#0 GAAACTAAAAAGGCTGCGGGCTGATAAACAAAAATTGTTAGAAGAGGTGATGGAAAAGGA 360 consensus_4174#1 A----------------------------------------------------------- 359 consensus_4174#2 ------------------------------------------------------------ consensus_4174#0 GACGTTCAACAAGGCCCAACAAATCCTCAAACGTTTTGATCCATTAACATTTGCTTCGAT 420 consensus_4174#1 ------------------------------------------------------------ consensus_4174#2 ------------------------------------------------------------ consensus_4174#0 AACTGTTGAGGA 432 consensus_4174#1 ------------ consensus_4174#2 ------------ |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||