cluster # 4188

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Schistosoma mansoni
cluster # 4188 cluster # 4188 Sequences # 3 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_4188#0 length = 620 sequences # 1

consensus_4188#1 length = 490 sequences # 2

consensusID : consensus_4188#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 620
fasta sequence

                              [GGCACGACGGTTTTTTNATTGAACACAAATGTAACATNNATTCTATTTGGAATTCGTAATCAACGCACAATCAAGTACAAAAGAATTGTCAGTTGGTACAAATACCACAACCGCCACAGCTAAAATGGGAATCAAGACTTCCGCAATCTGATGTATGTCTTCTCCTCAGGTCCATCATATATCTGTTCAGCTGTGTATCAGGTAGGAACTCTTTATGATCTAGAATGTACTTATTAGTATCAGGATTAATAACGGAAATAGGGATGGACTCACCTGGGTCCCTGTAATGTTGTTGCGACTGGCTTGCATATGAACTACAGATTTACTAACCTGTTTTAGCAGACATTTCGTAGACTGTGCAAAATCAATTTGTCAATAGAATGTAACATTGAAAGACTATAAACTCTCTCTATTTGGATGAAAATGTCAGTGTTTAAGCAATTCCATTGTCGCTTTTCAAGTACGGTCTGGTAATTCTGCACCGAAAGACTTTATATACTGTCCTCTCCTACGCATCTCTCCAGGATGGACTTCATAAAGCTGATCGATATCATCTTTACCTCCACCGTTCCTGGGTGCGAAGCACTGGATGACAATTATTGCAATTCTTTTCTTCGTTG]

[+] EMBL CD081650             [GGCACGACGGTTTTTTNATTGAACACAAATGTAACATNNATTCTATTTGGAATTCGTAATCAACGCACAATCAAGTACAAAAGAATTGTCAGTTGGTACAAATACCACAACCGCCACAGCTAAAATGGGAATCAAGACTTCCGCAATCTGATGTATGTCTTCTCCTCAGGTCCATCATATATCTGTTCAGCTGTGTATCAGGTAGGAACTCTTTATGATCTAGAATGTACTTATTAGTATCAGGATTAATAACGGAAATAGGGATGGACTCACCTGGGTCCCTGTAATGTTGTTGCGACTGGCTTGCATATGAACTACAGATTTACTAACCTGTTTTAGCAGACATTTCGTAGACTGTGCAAAATCAATTTGTCAATAGAATGTAACATTGAAAGACTATAAACTCTCTCTATTTGGATGAAAATGTCAGTGTTTAAGCAATTCCATTGTCGCTTTTCAAGTACGGTCTGGTAATTCTGCACCGAAAGACTTTATATACTGTCCTCTCCTACGCATCTCTCCAGGATGGACTTCATAAAGCTGATCGATATCATCTTTACCTCCACCGTTCCTGGGTGCGAAGCACTGGATGACAATTATTGCAATTCTTTTCTTCGTTG]




>consensus_4188#0
GGCACGACGGTTTTTTNATTGAACACAAATGTAACATNNATTCTATTTGGAATTCGTAAT
CAACGCACAATCAAGTACAAAAGAATTGTCAGTTGGTACAAATACCACAACCGCCACAGC
TAAAATGGGAATCAAGACTTCCGCAATCTGATGTATGTCTTCTCCTCAGGTCCATCATAT
ATCTGTTCAGCTGTGTATCAGGTAGGAACTCTTTATGATCTAGAATGTACTTATTAGTAT
CAGGATTAATAACGGAAATAGGGATGGACTCACCTGGGTCCCTGTAATGTTGTTGCGACT
GGCTTGCATATGAACTACAGATTTACTAACCTGTTTTAGCAGACATTTCGTAGACTGTGC
AAAATCAATTTGTCAATAGAATGTAACATTGAAAGACTATAAACTCTCTCTATTTGGATG
AAAATGTCAGTGTTTAAGCAATTCCATTGTCGCTTTTCAAGTACGGTCTGGTAATTCTGC
ACCGAAAGACTTTATATACTGTCCTCTCCTACGCATCTCTCCAGGATGGACTTCATAAAG
CTGATCGATATCATCTTTACCTCCACCGTTCCTGGGTGCGAAGCACTGGATGACAATTAT
TGCAATTCTTTTCTTCGTTG

consensusID : consensus_4188#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 490
fasta sequence

                              [TGAGTAGCACT-ATAAAATCTCTCTATTTGGATGAAAATGTCAGTGTTTAAGCAATTCCATTGTCGCTTTTCAAGTACGGTCTGGTAATTCTGCACCGAAAGACTTTATATACTGTCCTCTCCTACGCATCTCTCTCCACCGTTCCTGGGTGCGAAGCACTGGATGACAATTATTGCAATTCTTTTCTTCGTTGTTTTTAAGGTCAGTCAATAATATGCAGCATAAAAACTGAGAAATATGTGAGTCGGTAGATTCGTCACTCCATATTTGCAGTCGCATAACAATATCAAGAAAAATCCAAAAGTATCAGAAATAGTTACAATATGCGAAATAGCAGAAAAGATTGCGTGTAGAAAAAGATAGAAGGTTTAGATCGGCATAAGTGCCTTTCTTGAAATGTATCATTTTCTTCAAGTTGGCTATCATTTCGATTTGGAAGGGAAAGAGGTGCAAATCAATTAATTCCGATCACTAAGTTGATATCAAATCA]

[+] EMBL CD113728             [TGAGTAGCACT ATAAAATCTCTCTATTTGGATGAAAATGTCAGTGTTTAAGCAATTCCATTGTCGCTTTTCAAGTACGGTCTGGTAATTCTGCACCGAAAGACTTTATATACTGTCCTCTCCTACGCATCTCTCTCCACCGTTCCTGGGTGCGAAGCACTGGATGACAATTATTGCAATTCTTTTCTTCGTTGTTTTTAAGGTCAGTCAATAATATGCAGCATAAAAACTGAGAAATATGTGAGTCGGTAGATTCGTCACTCCATATTTGCAGTCGCATAACAATATCAAGAAAAATCCAAAAGTATCAGAAATAGTTACAATATGCGAAATAGCAGAAAAGATTGCGTGTAGAAAAAGATAGAAGGTTTAGATCGGCATAAGTGCCTTTCTTGAAATGTATCATTTTCTTCAAGTTGGCTATCATTTCGATTTGGAAGGGAAAGAGGTGCAAATCAATTAATTCCGATCACTAAGTTGATATCAAATCA]
[+] EMBL CD113866             [tcgGTATCACTGATATAATCTCTCTATTTGGATGAAAATGTCAGTGTTTAAGCAATTCCATTGTCGCTTTTCAAGTACGGTCTGGTAATTCTGCACCGAAAGACTTTATATACTGTCCTCTCCTACGCATCTCTCTCCACCGTTCCTGGGTGCGAAGCACTGGATGACAATTATTGCAATTCTTTTCTTCGTTGTTTTTAAGGTCAGTCAATAATATGCAGCATAAAAACTGAGAAATATGTGAGTCGGTAGATTCGTCACTCCATATTTGCAGTCGCATAACAATATCAAGAAAAATCCAAAAGTATCAGAAATAGTTACAATATGCGAAATAGCAGAAAAGATTGCGTGTAGAAAAAGATAGAAGGTTTAGATCGGCATAAGTGCCTTTCTTGAAATGTATCATTTTCTTCAAGTTGGCTATCATTTCGATTTGGAAGGGACAGAGGTGCAAATCAATTAATTCCGATCACTAAGTTGATATCACATC ]




>consensus_4188#1
TGAGTAGCACTATAAAATCTCTCTATTTGGATGAAAATGTCAGTGTTTAAGCAATTCCAT
TGTCGCTTTTCAAGTACGGTCTGGTAATTCTGCACCGAAAGACTTTATATACTGTCCTCT
CCTACGCATCTCTCTCCACCGTTCCTGGGTGCGAAGCACTGGATGACAATTATTGCAATT
CTTTTCTTCGTTGTTTTTAAGGTCAGTCAATAATATGCAGCATAAAAACTGAGAAATATG
TGAGTCGGTAGATTCGTCACTCCATATTTGCAGTCGCATAACAATATCAAGAAAAATCCA
AAAGTATCAGAAATAGTTACAATATGCGAAATAGCAGAAAAGATTGCGTGTAGAAAAAGA
TAGAAGGTTTAGATCGGCATAAGTGCCTTTCTTGAAATGTATCATTTTCTTCAAGTTGGC
TATCATTTCGATTTGGAAGGGAAAGAGGTGCAAATCAATTAATTCCGATCACTAAGTTGA
TATCAAATCA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_4188#0      GGCACGACGGTTTTTTNATTGAACACAAATGTAACATNNATTCTATTTGGAATTCGTAAT 60
consensus_4188#1      -------------------TGAGTAGCACTATAAAATCT-CTCTATTTGGATGAAAATGT 40
                                         ***  *  * * *** **    **********        *

consensus_4188#0      CAACGCACAATCAAGTACAAAAGAATTGTCAGTTGGTACAAATACCACAACCGCCACAGC 120
consensus_4188#1      CAGTGTTTAAGCAATTCCA------TTGTCGCTT--TTCAAGTACGGT--CTGGTAATTC 90
                      **  *   ** *** * **      *****  **  * *** ***     * *  *   *

consensus_4188#0      TAAAATGGGAATCAAGACTT-CCGCAATCTGATGTATGTCT-TCTCCTCAGGTCCATCAT 178
consensus_4188#1      TGCACCGAAAGACTTTATATACTGTCCTCTCCTACGCATCTCTCTCCACCGTTCCTGGGT 150
                      *  *  *  *  *   *  * * *   ***  *     *** ***** * * ***    *

consensus_4188#0      ATATCTGTTCAGCTGTGTATCAGGTAGGAACTCTTTATGATCTAGAATGTACTTATTAGT 238
consensus_4188#1      GCGAAGCACTGGATGACAATTA--TTGCAATTCTTT----TCTTCGTTGT---TTTTAAG 201
                                 * **   ** *  * * ** *****    ***    ***   * ***  

consensus_4188#0      ATCAGG-ATTAATAACGGAAATAGGGATGGACTCACCTGGGTCCCTGTAATGTTGTTGCG 297
consensus_4188#1      GTCAGTCAATAATATGCAGCATAAAAACTGAGAAATATGTGAGTCGGTAGATTCGTCACT 261
                       ****  * *****      ***   *  **   *  ** *   * ***   * **  * 

consensus_4188#0      ACTGGCTTGCATATGAACTACAGATTTACTAACCTGTTTTAGCAGACATTTCGTAGACTG 357
consensus_4188#1      CCATATTTGCAGTCGCATAACAA---TATCAAGAAAAATC--CAAAAGTATCAGAAATAG 316
                       *    *****   * *  ***    **  **      *   ** *  * **  * *  *

consensus_4188#0      T-GCAAAAT-CAATTTGTCAATAGAATGTAACATTGAAAGACTATAAACTCTCTCTATTT 415
consensus_4188#1      TTACAATATGCGAAATAGCAGAAAAGATTGCGTGTAGAAAAAGATAGAAGGTTTAGATCG 376
                      *  *** ** * *  *  **  * *   *     *  ** *  *** *   * *  **  

consensus_4188#0      GGATGAAAATGTCAGTGTTTAAGCAATTCCATTGTCGCTTTTCAAGTACGGTCTGGTAAT 475
consensus_4188#1      GCAT--AAGTGCCTTTCTTGAAATGTATCATTTTCTTCAAGTTGGCTATCATTTCG--AT 432
                      * **  ** ** *  * ** **     **  **    *   *    **   * * *  **

consensus_4188#0      TCTGCACCGAAAGACTTTATATACTGTCCTCTCCTACGCATCTCTCCAGGATGGACTTCA 535
consensus_4188#1      TTGGAAGGGAAAGAGGT-GCAAATCAATTAATTCCGATCACTAAGTTGATATCAAATCA- 490
                      *  * *  ******  *   * *        * *    **          **  * *   

consensus_4188#0      TAAAGCTGATCGATATCATCTTTACCTCCACCGTTCCTGGGTGCGAAGCACTGGATGACA 595
consensus_4188#1      ------------------------------------------------------------
                                                                                  

consensus_4188#0      ATTATTGCAATTCTTTTCTTCGTTG 620
consensus_4188#1      -------------------------