These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_4190#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 519 fasta sequence [TCTGGATCTCGAGAAAGATCCGAAAGCTTGTTTAAAAGATTTTGACTTCAGCGTAGTTGGATTCTCAATTTTCGGGCAGGTAACTACTTCTGGAATGAAAACCGGGCCACCTGGTTTGTCAGTTCGATTAACTGACCCAACCTCTCACAAACCAATACTTCATAATTTTACACAGAATCAAGGTTATTTCATGATATCTCCTGTGACGCCTGGTAACTATTTATTGACCGTCAGCAATCAAGATCGTAGTGATAAAGATCATACAAGAGCATCTATCAATATTAGAATCCAGTCTGTTAGTATCAACTTGTCAGAAGCAATCATTTTACTTGGTCATTTTCTCCGCGGACGTGTGACAGACTTCAATCAGAATCCTTTGGTCGATGCAAAAGTTTTCCTGTTATGTGATAAAGATAAGACATTATCGAAATCCTCTACCACTTTAGACAAGCCAGTATATTCATATATAGTCGAAACACTTGGTGAAATCCATTATAAATNNTTAACAATACAAGAGTC] [+] EMBL CD201355 [TCTGGATCTCGAGAAAGATCCGAAAGCTTGTTTAAAAGATTTTGACTTCAGCGTAGTTGGATTCTCAATTTTCGGGCAGGTAACTACTTCTGGAATGAAAACCGGGCCACCTGGTTTGTCAGTTCGATTAACTGACCCAACCTCTCACAAACCAATACTTCATAATTTTACACAGAATCAAGGTTATTTCATGATATCTCCTGTGACGCCTGGTAACTATTTATTGACCGTCAGCAATCAAGATCGTAGTGATAAAGATCATACAAGAGCATCTATCAATATTAGAATCCAGTCTGTTAGTATCAACTTGTCAGAAGCAATCATTTTACTTGGTCATTTTCTCCGCGGACGTGTGACAGACTTCAATCAGAATCCTTTGGTCGATGCAAAAGTTTTCCTGTTATGTGATAAAGATAAGACATTATCGAAATCCTCTACCACTTTAGACAAGCCAGTATATTCATATATAGTCGAAACACTTGGTGAAATCCATTATAAATNNTTAACAATACAAGAGTC] consensusID : consensus_4190#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 405 fasta sequence [CATCGACCAAAGGATTCTGATTGAAGTCTGTCACACGTCCGCGGAGAAAATGACCCTAAGTATAGAGAATAAACATATTAATAATTAACAGTGATATGAAATAACGATGTTCATGGGTTTGTTTCATTTTTGATGTTATATCCAACAAATGATTGATACTAAATAAGATGTATTTAATACCATAATTTTCAAGAGGAAAATTAATTAAAATAATGAAAGTATAACAAGACTGTGATACGTCTCCAAACTCCTAATTATATACTTCCGCAATTGTTAAACACTATCTTCCCATCAATAAGTAATGTTAAAAGGACAGGCATATTTAATCGTGATAATGTCTAATCTACTACCAACTAAATAGGCTGAAAAAGAGTTCATAGCAGTTAAAACTCCATGCAAGATGAA] [+] EMBL CD066338 [CATCGACCAAAGGATTCTGATTGAAGTCTGTCACACGTCCGCGGAGAAAATGACCCTAAGTATAGAGAATAAACATATTAATAATTAACAGTGATATGAAATAACGATGTTCATGGGTTTGTTTCATTTTTGATGTTATATCCAACAAATGATTGATACTAAATAAGATGTATTTAATACCATAATTTTCAAGAGGAAAATTAATTAAAATAATGAAAGTATAACAAGACTGTGATACGTCTCCAAACTCCTAATTATATACTTCCGCAATTGTTAAACACTATCTTCCCATCAATAAGTAATGTTAAAAGGACAGGCATATTTAATCGTGATAATGTCTAATCTACTACCAACTAAATAGGCTGAAAAAGAGTTCATAGCAGTTAAAACTCCATGCAAGATGAA] [+] EMBL CD067213 [CATCGACCAAAGGATTCTGATTGAAGTCTGTCACACGTCCGCGGAGAAAATGACCCTAAGTATAGAGAATAAACATATTAATAATTAACAGTGATATGAAATAACGATGTTCATGGGTTTGTTTCATTTTTGATGTTATATCCAACAAATGATTGATACTAAATAAGATGTATTTAATACCATAATTTTCAAGAGGAAAATTATTTAAAATAATGAAGGTtt ] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_4190#0 TCTGGATCTCGAGAAAGATCCGAAAGCTTGTTTAAAAGATTTTGACTTCAGCGTAGTTGG 60 consensus_4190#1 ------------------------------------------------------------ consensus_4190#0 ATTCTCAATTTTCGGGCAGGTAACTACTTCTGGAATGAAAACCGGGCCACCTGGTTTGTC 120 consensus_4190#1 ---------CATCGACCAAAGGA----TTCTG-ATTGAAGTCTGTCACACGTCCGCGGAG 46 *** ** * ***** * **** * * *** * * consensus_4190#0 AGTTCGATTAACTGACCCAACCTCTCACAAACCAATACTTCATAATTTTACACAGAATCA 180 consensus_4190#1 AAAATGACCCTAAGTATAGAGAATAAACATATTAATAATTAACAGTGATATGAAATAACG 106 * ** * * *** * **** ** * * * ** * * * consensus_4190#0 AGGTT-ATTTCATGATATCTCCTGTGACGCCTGGTAACTATTTATTGACCGTCAGCAATC 239 consensus_4190#1 ATGTTCATGGGTTTGTTTCATTTTTGATGTT--ATATCCAACAAATGATTGATACTAAAT 164 * *** ** * * ** * *** * ** * * * *** * * ** consensus_4190#0 AAGATCGTAGTGATAAAGATCATACAAGAGCATCTATCAATATTAGAATCCAGTCTGTTA 299 consensus_4190#1 AAGAT----GTATTTAATACCATA-------ATTT-TCAAGAGGAAAATTAATTAAAATA 212 ***** ** * ** * **** ** * **** * * *** * * ** consensus_4190#0 GTATCAACTTGTCAGAAGCAATCATTTTACTTGGTCATTTTCTCCGCGGACGTGTGACAG 359 consensus_4190#1 ATGAAAGTATAACA-AGACTGTGATACGTCTCCAAACTCCTAATTATATACTTCCG-CAA 270 * * * ** * * * ** ** * * ** * * ** consensus_4190#0 ACTTCAATCAGAATCCTTTGGTCGATGCAAAA-GTTTTCCTGTTATGTG-ATAAAGATAA 417 consensus_4190#1 TTGTTAAACACTATCTTCCCATCAATAAGTAATGTTAAAAGGACAGGCATATTTAATCGT 330 * ** ** *** * ** ** ** *** * * * ** * consensus_4190#0 GACATTATCGAAATCCTCTACCACTTTAGACAAGCCAGTATA---TTCATATATAGTCGA 474 consensus_4190#1 GATAATGTCTAA-TCTACTACCAACT-AAATAGGCTGAAAAAGAGTTCATA-GCAGTTAA 387 ** * * ** ** ** ****** * * * * ** * * ****** *** * consensus_4190#0 AACACTTGGTGAAATCCATTATAAATNNTTAACAATACAAGAGTC 519 consensus_4190#1 AACTCCATGCAAGATGAA--------------------------- 405 *** * * * ** * |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||