These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_4194#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 390 fasta sequence [GGACGAGGTCGTGGTCGTGGAGTTGCAACAAAAGAATGGAAGCCTGTTACCCAGTTGGGACGTCTAGTAAACGAAAGGAAAATTACTACATTAGAAGAAATATACATGTTCAGTCTCCCGATTAAGGAGTGTGAAATTATAGATACCATATTGGGTTCAAGTTTAAAAGATGAAGTACTTAAAATCATGCCAGTTCAAAAGCAGACTTGTGCTGGCCAGAGAACCCGCTTTAAAGCAATTGTTGCAATGGGAGACCATAACTGTCACGTTGGGCTAGGAGTAAAATGTGCTAAGGAGGTCGCTACAGCAATTAGAGGCGCTATCATTCAGGCTAAGCTGTCAATAATTCCTGTAAGGAAAGGATACTGGGAGAAACCCTGTAAACTACAC] [-] EMBL CD185004 [GGACGAGGTCGTGGTCGTGGAGTTGCAACAAAAGAATGGAAGCCTGTTACCCAGTTGGGACGTCTAGTAAACGAAAGGAAAATTACTACATTAGAAGAAATATACATGTTCAGTCTCCCGATTAAGGAGTGTGAAATTATAGATACCATATTGGGTTCAAGTTTAAAAGATGAAGTACTTAAAATCATGCCAGTTCAAAAGCAGACTTGTGCTGGCCAGAGAACCCGCTTTAAAGCAATTGTTGCAATGGGAGACCATAACTGTCACGTTGGGCTAGGAGTAAAATGTGCTAAGGAGGTCGCTACAGCAATTAGAG ] [+] EMBL CD059576 [ GGACGTCTAGTAAACGAAAGGAAAATTACTACATTAGAAGAAATATACATGTTCAGTCTCCCGATTAAGGAGTGTGAAATTATAGATACCATATTGGGTTCAAGTTTAAAAGATGAAGTACTTAAAATCATGCCAGTTCAAAAGCAGACTTGTGCTGGCCAGAGAACCCGCTTTAAAGCAATTGTTGCAATGGGAGACCATAACTGTCACGTTGGGCTAGGAGTAAAATGTGCTAAGGAGGTCGCTACAGCAATTAGAGGCGCTATCATTCAGGCTAAGCTGTCAATAATTCCTGTAAGGAAAGGATACTGGGAGAAACCCTGTAAACTACAC] consensusID : consensus_4194#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 102 fasta sequence [ACCGAAAATAATCCCAGCTATAAAGGATGCGAGTGTGATTCATGAACCACATCACGTACACACAGTCAACAAGAAACTTCAAGCTGTGGTATATCATCCATC] [+] EMBL CD064343 [ACCGAAAATAATCCCAGCTATAAAGGATGCGAGTGTGATTCATGAACCACATCACGTACACACAGTCAACAAGAAACTTCAAGCTGTGGTATATCATCCATC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_4194#0 GGACGAGGTCGTGGTCGTGGAGTTGCAACAAAAGAATGGAAGCCTGTTACCCAGTTGGGA 60 consensus_4194#1 ------------------------------------------------------------ consensus_4194#0 CGTCTAGTAAACGAAAGGAAAATTACTACATTAGAAGAAATATACATGTTCAGTCTCCCG 120 consensus_4194#1 ------------------------------------------------------------ consensus_4194#0 ATTAAGGAGTGTGAAATTATAGATACCATATTGGGTTCAAGTTTAAAAGATGAAGTACTT 180 consensus_4194#1 --------ACCGAAAATAATCCCAGCTATAAAGGATGCGAGTGTGATTCATGAACCACAT 52 **** ** * *** ** * * *** * * ***** ** * consensus_4194#0 AAAATCATGCCAGTTCAAAAGCAGACTTGTGCTG-GCCAGAGAACCCGCTTTAAAGCAAT 239 consensus_4194#1 CACGTACACACAGTCAACAAGAAACTTCAAGCTGTGGTATATCATCCATC---------- 102 * * **** * *** * * **** * * * * ** consensus_4194#0 TGTTGCAATGGGAGACCATAACTGTCACGTTGGGCTAGGAGTAAAATGTGCTAAGGAGGT 299 consensus_4194#1 ------------------------------------------------------------ consensus_4194#0 CGCTACAGCAATTAGAGGCGCTATCATTCAGGCTAAGCTGTCAATAATTCCTGTAAGGAA 359 consensus_4194#1 ------------------------------------------------------------ consensus_4194#0 AGGATACTGGGAGAAACCCTGTAAACTACAC 390 consensus_4194#1 ------------------------------- |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||