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These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_4195#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 859 fasta sequence
[GAGCCTNATTCGGCACCAGGCGTTTGTCAGGGGATATTTTCATTAGCCATGACGGATTCCAGAGATGAAGTTGTCTTAGCTTTGACAGATGATATGGATACTGGATCATCGGACGGACCTCATAGCCCATCAACCCGACGCTCAGCTGTAATCGGTCATTTCCTCTTCCGTTCTTCTGCTTTGGTCATATATATACTATGCGCTTGGTTTACAACGTCTTTCGTTCTTCCGTTTATCTTTATACTTGTTTGCTTATCACTCGATTTTTGGGTTGTAAAAAATATTTCTGGACGCATCTTAGTTGGCTTACGTTGGTCAAGTTATACCGATGACGCCGGAGTGGTACATTGGCGATATGACTCACGTAAACCTTCACCTATAGATTCTGCTGATGTTTCCTCCCTTAGTCGGCGCGAATTGGCCGCTCGTATGGCTAGACAACAATTATCTCGTTTATTTTGGATGGGTTTAATTGGAAGTCCAGCAATATGGTGTGTATTTTTCTTGGCGTCATTATTTTCACTGCATATTCGTTGGGCTTTTGTTTGCACCATCGCATTGTGTATGAATATAGCGAATGTTTATGGTTATATTCGTTGTTGGATGTCTAATATGAATGAAAGTGAATCAAATATTTTGAAAGTAATCAAATCTACAGCAACCAGCANAATGTCTAATTTATGGCCTTTGTCTCAAACTAAATCCGGTTCAAATACCACATCTGGGGGTGGTCTACCATTAGTTGCCTAAGAAAAAAACAACACATCTCACGTATTCCTCTATACATAATGTAAAAAAAGAGACTAAGTAAATATGTTATGATTTTTTGAATTTTAACTGTGATACTACCATATAATTT]
[+] EMBL CD081486 [GAGCCTNATTCGGCACCAGGCGTTTGTCAGGGGATATTTTCATTAGCCATGACGGATTCCAGAGATGAAGTTGTCTTAGCTTTGACAGATGATATGGATACTGGATCATCGGACGGACCTCATAGCCCATCAACCCGACGCTCAGCTGTAATCGGTCATTTCCTCTTCCGTTCTTCTGCTTTGGTCATATATATACTATGCGCTTGGTTTACAACGTCTTTCGTTCTTCCGTTTATCTTTATACTTGTTTGCTTATCACTCGATTTTTGGGTTGTAAAAAATATTTCTGGACGCATCTTAGTTGGCTTACGTTGGTCAAGTTATACCGATGACGCCGGAGTGGTACATTGGCGATATGACTCACGTAAACCTTCACCTATAGATTCTGCTGATGTTTCCTCCCTTAGTCGGCGCGAATTGGCCGCTCGTATGGCTAGACAACAATTATCTCGTTTATTTTGGATGGGTTTAATTGGAAGTCCAGCAATATGGTGTGTATTTTTCTTGGCGTCATTATTTTCACTGCATATTCGTTGGGCTTTTGTTTGCACCATCGCATTGTGTATGAATATAGCGAATGTTTATGGTTATATTCGTTGTTGGATGTCTAATATGAATGAAAGTGAATCAAATATTTTGAAAGTAATCAAATCTACAGCAACCAGCANAATGTCTAATTTATGGCCTTTGTCTCAAACTAAATCCGGTTCAAATACCACATCTGGGGGTGGTCTACCATTAGTTGCCTAAGAAAAAAACAACACATCTCACGTATTCCTCTATACATAATGTAAAAAAAGAGACTAAGTAAATATGTTATGATTTTTTGAATTTTAACTGTGATACTACCATATAATTT]
[+] EMBL CD083805 [ gGTTTGTCAGGGCATATTTTCATTAGCCATGATGGATTCCAGAGATGAAGTTGTCTTAGCTTTGACAGATGATATGGATACTGGATCATCGGACGGACCTCATAGCCCATCAACCCGACGCTCAGCTGTAATCGGTCATTTCCTCTTCCGTTCTTCTGCTTTGGTCATATATATACTATGCGCTTGGTTTACAACGTCTTTCGTTCTTCCGTTTATCTTTATACTTGTTTGCTTATCACTCGATTTTTGGGTTGTAAAAAATATTTCTGGACGCATCTTAGTTGGCTTACGTTGGTCAAGTTATACCGATGACGCCGGAGTGGTACATTGGCGATATGACTCACGTAAACCTTCACCTATAGATTCTGCTGATGTTTCCTCCCTTAGTCGGCGCGAATTGGCCGCTCGTATGGCTAGACAACAATTATCTCGTTTATTTTGGATGG ]
consensusID : consensus_4195#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 690 fasta sequence
[CCTCGGGCCAANAATTCGGCACGAGGTTTCAAGAGCTATCGCAGTCAAGTGGTTGGACTCCCTCCTATTGGAAATTACTGAAGACTTGGAACAGTACCGAAGCAATAAGGGGCTATCGCAACAAAATTAATCAGTTTGTATTGGATCGTTACGGTGTTGGATATTGAAACCGCATATTTTCATTAGCCATGATGGATTCCAGAGATGAAGTTGTCTTAGCTTTGACAGATGATATGGATACTGGATCATCGGACGGACCTCATAGCCCATCAACCCGACGCTCAGCTGTAATCGGTCATTTCCTCTTCCGTTCTTCTGCTTTGGTCATATATATACTATGCGCTTGGTTTACAACGTCTTTCGTTCTTCCGTTTATCTTTATACTTGTTTGCTTATCACTCGATTTTTGGGTTGTAAAAAATATTTCTGGACGCATCTTAGTTGGCTTACGTTGGTCAAGTTATACCGATGACGCCGGAGTGGTACATTGGCGATATGACTCACGTAAACCTTCACCTATAGATTCTGCTGATGTTTCCTCCCTTAGTCGGCGCGAATTGGCCGCTCGTATGGCTAGACAACAATTATCTCGTTTATTTTGGATGGGTTTAATTGGAAGTCCAGCAATATGGTGTGTATTTTTCTTGGCGTCATTATTTTCACTGCATATTCGTTGGGCTTTTGTTTGCA]
[+] EMBL CD081950 [CCTCGGGCCAANAATTCGGCACGAGGTTTCAAGAGCTATCGCAGTCAAGTGGTTGGACTCCCTCCTATTGGAAATTACTGAAGACTTGGAACAGTACCGAAGCAATAAGGGGCTATCGCAACAAAATTAATCAGTTTGTATTGGATCGTTACGGTGTTGGATATTGAAACCGCATATTTTCATTAGCCATGATGGATTCCAGAGATGAAGTTGTCTTAGCTTTGACAGATGATATGGATACTGGATCATCGGACGGACCTCATAGCCCATCAACCCGACGCTCAGCTGTAATCGGTCATTTCCTCTTCCGTTCTTCTGCTTTGGTCATATATATACTATGCGCTTGGTTTACAACGTCTTTCGTTCTTCCGTTTATCTTTATACTTGTTTGCTTATCACTCGATTTTTGGGTTGTAAAAAATATTTCTGGACGCATCTTAGTTGGCTTACGTTGGTCAAGTTATACCGATGACGCCGGAGTGGTACATTGGCGATATGACTCACGTAAACCTTCACCTATAGATTCTGCTGATGTTTCCTCCCTTAGTCGGCGCGAATTGGCCGCTCGTATGGCTAGACAACAATTATCTCGTTTATTTTGGATGGGTTTAATTGGAAGTCCAGCAATATGGTGTGTATTTTTCTTGGCGTCATTATTTTCACTGCATATTCGTTGGGCTTTTGTTTGCA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_4195#0 ------------------------------------------------------------
consensus_4195#1 CCTCGGGCCAANAATTCGGCACGAGGTTTCAAGAGCTATCGCAGTCAAGTGGTTGGACTC 60
consensus_4195#0 ------------------------------------------------------------
consensus_4195#1 CCTCCTATTGGAAATTACTGAAGACTTGGAACAGTACCGAAGCAATAAGGGGCTATCGCA 120
consensus_4195#0 ---------------------GAGCCTNATTCGGCACCAGGCGTTTGTCAGGGGATATTT 39
consensus_4195#1 ACAAAATTAATCAGTTTGTATTGGATCGTTACGGTGTTGGATATT-GAAACCGCATATTT 179
* * *** * ** * * * ******
consensus_4195#0 TCATTAGCCATGACGGATTCCAGAGATGAAGTTGTCTTAGCTTTGACAGATGATATGGAT 99
consensus_4195#1 TCATTAGCCATGATGGATTCCAGAGATGAAGTTGTCTTAGCTTTGACAGATGATATGGAT 239
************* **********************************************
consensus_4195#0 ACTGGATCATCGGACGGACCTCATAGCCCATCAACCCGACGCTCAGCTGTAATCGGTCAT 159
consensus_4195#1 ACTGGATCATCGGACGGACCTCATAGCCCATCAACCCGACGCTCAGCTGTAATCGGTCAT 299
************************************************************
consensus_4195#0 TTCCTCTTCCGTTCTTCTGCTTTGGTCATATATATACTATGCGCTTGGTTTACAACGTCT 219
consensus_4195#1 TTCCTCTTCCGTTCTTCTGCTTTGGTCATATATATACTATGCGCTTGGTTTACAACGTCT 359
************************************************************
consensus_4195#0 TTCGTTCTTCCGTTTATCTTTATACTTGTTTGCTTATCACTCGATTTTTGGGTTGTAAAA 279
consensus_4195#1 TTCGTTCTTCCGTTTATCTTTATACTTGTTTGCTTATCACTCGATTTTTGGGTTGTAAAA 419
************************************************************
consensus_4195#0 AATATTTCTGGACGCATCTTAGTTGGCTTACGTTGGTCAAGTTATACCGATGACGCCGGA 339
consensus_4195#1 AATATTTCTGGACGCATCTTAGTTGGCTTACGTTGGTCAAGTTATACCGATGACGCCGGA 479
************************************************************
consensus_4195#0 GTGGTACATTGGCGATATGACTCACGTAAACCTTCACCTATAGATTCTGCTGATGTTTCC 399
consensus_4195#1 GTGGTACATTGGCGATATGACTCACGTAAACCTTCACCTATAGATTCTGCTGATGTTTCC 539
************************************************************
consensus_4195#0 TCCCTTAGTCGGCGCGAATTGGCCGCTCGTATGGCTAGACAACAATTATCTCGTTTATTT 459
consensus_4195#1 TCCCTTAGTCGGCGCGAATTGGCCGCTCGTATGGCTAGACAACAATTATCTCGTTTATTT 599
************************************************************
consensus_4195#0 TGGATGGGTTTAATTGGAAGTCCAGCAATATGGTGTGTATTTTTCTTGGCGTCATTATTT 519
consensus_4195#1 TGGATGGGTTTAATTGGAAGTCCAGCAATATGGTGTGTATTTTTCTTGGCGTCATTATTT 659
************************************************************
consensus_4195#0 TCACTGCATATTCGTTGGGCTTTTGTTTGCACCATCGCATTGTGTATGAATATAGCGAAT 579
consensus_4195#1 TCACTGCATATTCGTTGGGCTTTTGTTTGCA----------------------------- 690
*******************************
consensus_4195#0 GTTTATGGTTATATTCGTTGTTGGATGTCTAATATGAATGAAAGTGAATCAAATATTTTG 639
consensus_4195#1 ------------------------------------------------------------
consensus_4195#0 AAAGTAATCAAATCTACAGCAACCAGCANAATGTCTAATTTATGGCCTTTGTCTCAAACT 699
consensus_4195#1 ------------------------------------------------------------
consensus_4195#0 AAATCCGGTTCAAATACCACATCTGGGGGTGGTCTACCATTAGTTGCCTAAGAAAAAAAC 759
consensus_4195#1 ------------------------------------------------------------
consensus_4195#0 AACACATCTCACGTATTCCTCTATACATAATGTAAAAAAAGAGACTAAGTAAATATGTTA 819
consensus_4195#1 ------------------------------------------------------------
consensus_4195#0 TGATTTTTTGAATTTTAACTGTGATACTACCATATAATTT 859
consensus_4195#1 ----------------------------------------
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| Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||