cluster # 4196

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Schistosoma mansoni
cluster # 4196 cluster # 4196 Sequences # 3 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_4196#0 length = 133 sequences # 2

consensus_4196#1 length = 121 sequences # 1

consensusID : consensus_4196#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 133
fasta sequence

                              [ATATAAATCCAGGTACCAAAAGAAACAAAACAAATCATTAATAATCCCATCTATTAAGTCACAATAAGTCTTCACTACAAACTAATACTAAAATAAGTGTATGANACAAACAAATCTTCTAAAANNNTTGTCA]

[+] EMBL SMRAP117             [ATATAAATCCAGGTACCAAAAGAAACAAAACAAATCATTAATAATCCCATCTATTAAGTCACAATAAGTCTTCACTACAAACTAATACTAAAATAAGTGTATGANACAAACAAATCTTCTAAAANNNTTGTCA]
[+] EMBL SMRAP105             [ATATAAATCCAGGTACCAAAAGAAACAAAACAAATCATTAATAATCCCATCTATTAAGTCACAATAAGTCTTCACTACAAACTAAAACTAAAATAAGTGTATGAAACAAACAAATCTACTAAAAAACTTGT  ]




>consensus_4196#0
ATATAAATCCAGGTACCAAAAGAAACAAAACAAATCATTAATAATCCCATCTATTAAGTC
ACAATAAGTCTTCACTACAAACTAATACTAAAATAAGTGTATGANACAAACAAATCTTCT
AAAANNNTTGTCA

consensusID : consensus_4196#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 121
fasta sequence

                              [NTCATACACTTATTYAGTTTAGTTTKTAGTGAAGACTTATTGTGACTTAATAGATGGGATTATTAATGATTYSTCTGGCTCTCTYGGTACCTGGATTTATATCTACAAATAACTGATCAAC]

[+] EMBL SMRAP042             [NTCATACACTTATTYAGTTTAGTTTKTAGTGAAGACTTATTGTGACTTAATAGATGGGATTATTAATGATTYSTCTGGCTCTCTYGGTACCTGGATTTATATCTACAAATAACTGATCAAC]




>consensus_4196#1
NTCATACACTTATTYAGTTTAGTTTKTAGTGAAGACTTATTGTGACTTAATAGATGGGAT
TATTAATGATTYSTCTGGCTCTCTYGGTACCTGGATTTATATCTACAAATAACTGATCAA
C

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_4196#0      -ATATAAATCCAGGTACCAAAAGAAACAAAACAAATCATTAATAATCCCATCTATTAAGT 59
consensus_4196#1      NTCATACACTTATTYAGTTTAGTTTKTAGTGAAGACTTATTGTGACTTAATAGATGGGAT 60
                         *** *   *   *    *      *    * *    *  * *    **  **    *

consensus_4196#0      CAC-AATAAGTCTTCACTACAAACTAATACTAAAATAAGTGTATGANACAAACAAATCTT 118
consensus_4196#1      TATTAATGATTYSTCTGGCTCTCTYGGTACCTGGATTTATATCTACAAATAACTGATCAA 120
                       *  *** * *  **            ***    **   * * *   *  ***  ***  

consensus_4196#0      CTAAAANNNTTGTCA 133
consensus_4196#1      C-------------- 121
                      *