cluster # 4200

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Schistosoma mansoni
cluster # 4200 cluster # 4200 Sequences # 3 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_4200#0 length = 442 sequences # 1

consensus_4200#1 length = 434 sequences # 2

consensusID : consensus_4200#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 442
fasta sequence

                              [CAGGCTAAGCTGTCAATAATTCCTGTAAGGAAAGGATACTGGGGTAATCATTCAGGCTAAGCTGTCAATAATTCCTGTAAGGAAAGGATACTGGGGTAATCAAATTGGTAAACCACACACTGTTCCATGTAAAGTGACTGGAAAATGTGGTTCTGTGTCAGTACGTTTGATTCCAGCCCCTCGTGGAACAGGCATTGTTGGTGCCCCAGTTCCCAAAAAGCTTCTTCAAATGGCTGGTATCGAAGATGTCTACACAAGTGCTCGTGGTCAGACCTCAACCTTGGGAAATTTCGCCAAAGCAACATACGCAGCCATACGAGCTACCTATGAGTATCTAACACCTGATTTATGGAACGTGGTTCCAAAATCAAAACACATATTTGTTGAGTATGCTGGATTTCTTAACAAAATTGCTAAAGAAGTTTGAATGATAATATATATT]

[+] EMBL CD080063             [CAGGCTAAGCTGTCAATAATTCCTGTAAGGAAAGGATACTGGGGTAATCATTCAGGCTAAGCTGTCAATAATTCCTGTAAGGAAAGGATACTGGGGTAATCAAATTGGTAAACCACACACTGTTCCATGTAAAGTGACTGGAAAATGTGGTTCTGTGTCAGTACGTTTGATTCCAGCCCCTCGTGGAACAGGCATTGTTGGTGCCCCAGTTCCCAAAAAGCTTCTTCAAATGGCTGGTATCGAAGATGTCTACACAAGTGCTCGTGGTCAGACCTCAACCTTGGGAAATTTCGCCAAAGCAACATACGCAGCCATACGAGCTACCTATGAGTATCTAACACCTGATTTATGGAACGTGGTTCCAAAATCAAAACACATATTTGTTGAGTATGCTGGATTTCTTAACAAAATTGCTAAAGAAGTTTGAATGATAATATATATT]




>consensus_4200#0
CAGGCTAAGCTGTCAATAATTCCTGTAAGGAAAGGATACTGGGGTAATCATTCAGGCTAA
GCTGTCAATAATTCCTGTAAGGAAAGGATACTGGGGTAATCAAATTGGTAAACCACACAC
TGTTCCATGTAAAGTGACTGGAAAATGTGGTTCTGTGTCAGTACGTTTGATTCCAGCCCC
TCGTGGAACAGGCATTGTTGGTGCCCCAGTTCCCAAAAAGCTTCTTCAAATGGCTGGTAT
CGAAGATGTCTACACAAGTGCTCGTGGTCAGACCTCAACCTTGGGAAATTTCGCCAAAGC
AACATACGCAGCCATACGAGCTACCTATGAGTATCTAACACCTGATTTATGGAACGTGGT
TCCAAAATCAAAACACATATTTGTTGAGTATGCTGGATTTCTTAACAAAATTGCTAAAGA
AGTTTGAATGATAATATATATT

consensusID : consensus_4200#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 434
fasta sequence

                              [CACTTTCAAGCCATGAGTGTTCTGATCGTTACTTTCTATACATTTCTTCCCTTTTTGACACCAAATACATGCCATATTCGATGTCTTTGCACTTTGACATGTTTCACTTGTATTGTATTGCGAACAAATTTCTATGGAAAGAATAGGCTGAATTCATTTAAAGTTAATGAATAAAAGAACAGAGAGATAAGAAACCTGTAAATATAACTCAATGACGTGATGGTGATTTCTGAGTTCAGTGACTTATCCATTCGGTGGTAAATGGTCAACATGGTGCATCATGCAAAACTCAGTACACTTCAATTTCTCTTCTATTTCAAGACTGCATTTTTGGATTGAATGAAATTACCTTGAGTACAAAGAACAAGTGACGATTTTTTGACAAGGGGAAATTGTTCACTTTTAATAACTGTTCACATTCAGATATGTGCACA]

[-] EMBL CD135565             [CACTTTCAAGCCATGAGTGTTCTGATCGTTACTTTCTATACATTTCTTCCCTTTTTGACACCAAATACATGCCATATTCGATGTCTTTGCACTTTGACATGTTTCACTTGTATTGTATTGCGAACAAATTTCTATGGAAAGAATAGGCTGAATTCATTTAAAGTTAATGAATAAAAGAACAGAGAGATAAGAAACCTGTAAATATAACTCAATGACGTGATGGTGATTTCTGAGTTCAGTGACTTATCCATTCGGTGGTAAATGGTCAACATGGTGCATCATGCAAAACTCAGTACACTTCAATTTCTCTTCTATTTCAAGACTGCATTTTTGGATTGAATGAAATTACCTTGAGTACAAAGAACAAGTGACGATTTTTTGACAAGGGGAAATTGTTCACTTTTAATAACTGTTCACATTCAGATATGTGCACA]
[+] EMBL CD154635             [                                                                                                             GTATTGTATTGCGAACAAATTTCTATGGAAAGAATAGGCTGAATTCATTTAAAGTTAATGAGTAAAAGAACAGAGAGATAAGAAACCTGTAAATATAACTCAATGACGTGATGGTGATTTCTGAGTTCAGTGACTTATCCATTCGGTGGTAAATGGTCAACATGGTGCATCATGCAATACTCAGTACACTTCAATTTCTCTTCTATTTCAAGACTGCATTTTTGGATTGAATGAAATTACCTTGAGTACAAAGAACAAGTGACGATTTTTTGACAAGGGGAAATTGTTCACTTTTAATAACTGTTC                   ]




>consensus_4200#1
CACTTTCAAGCCATGAGTGTTCTGATCGTTACTTTCTATACATTTCTTCCCTTTTTGACA
CCAAATACATGCCATATTCGATGTCTTTGCACTTTGACATGTTTCACTTGTATTGTATTG
CGAACAAATTTCTATGGAAAGAATAGGCTGAATTCATTTAAAGTTAATGAATAAAAGAAC
AGAGAGATAAGAAACCTGTAAATATAACTCAATGACGTGATGGTGATTTCTGAGTTCAGT
GACTTATCCATTCGGTGGTAAATGGTCAACATGGTGCATCATGCAAAACTCAGTACACTT
CAATTTCTCTTCTATTTCAAGACTGCATTTTTGGATTGAATGAAATTACCTTGAGTACAA
AGAACAAGTGACGATTTTTTGACAAGGGGAAATTGTTCACTTTTAATAACTGTTCACATT
CAGATATGTGCACA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_4200#0      CAGGCTAAGCTGTCAATAATTCCTGTAAGGAAAGGATACTGGGGTAATCATTCAGGCTAA 60
consensus_4200#1      -------------------CACTTTCAAGCCATGAGTGTTCTGATCGTTACTTTCTATAC 41
                                           * *  ***  * *  *  *  * *  * * *     ** 

consensus_4200#0      GCTGTCAATAATTCCTGTAAGGAAAGGATACTGGGGTAATCAAATTGGTAAACCACACAC 120
consensus_4200#1      ATTTCTTCCCTTTTTGACACCAAATACATGCCATATTCGATGTCTTTGCACTTTG-ACA- 99
                        *        **     *   **   ** *     *       ** * *      *** 

consensus_4200#0      TGTTCCATGTAAAGTGACTGGAAAATGTGGTTCTGTGTCAGTAC--GTTTGATTCCAGCC 178
consensus_4200#1      TGTTTCACTTGTATTGTATTGCGAACAAATTTCTATGGAAAGAATAGGCTGAATTCATTT 159
                      **** **  *  * **  * *  **     **** **  *  *   *  *** * **   

consensus_4200#0      C---CTCGTGGAACAGGCATTGTTGGTGCCCCAGTTCCCAAAA---AGCTTCTTCAAATG 232
consensus_4200#1      AAAGTTAATGAATAAAAGAACAGAGAGATAAGAAACCTGTAAATATAACTCAATGACGTG 219
                           *  ** *  *   *     *       *   *   ***   * **   * *  **

consensus_4200#0      GC--TGGTATCGAAGATGTCT-ACACAAGTGCTCGTGGTCAGACCTCAACCTTGGGAAAT 289
consensus_4200#1      ATGGTGATTTCTGAGTTCAGTGACTTATCCATTCGGTGGTAAATGGTCAACATGGTGCAT 279
                          ** * **  ** *   * **  *     ***  *  * *     * * ***   **

consensus_4200#0      TTCGCCAAAGCAACATACGCAGCCATACGAGCTACCTATGAGTATCTAACACCTGATTT- 348
consensus_4200#1      CATGC-AAAACTCAGTACACTTCAATTTCTCTTCTATTTCAAGACTGCATTTTTGGATTG 338
                         ** *** *    *** *  * **      *   * * *  *    *    **  ** 

consensus_4200#0      -ATGGAA----CGTGGTTCCAAAATCAAAACACATATTTGTTGAGTATGCTGGATTTCTT 403
consensus_4200#1      AATGAAATTACCTTGAGTACAAAGAACAAGTGACGATTTTTTGACAAGGGGAAATTGTTC 398
                       *** **    * **  * ****    **      **** ****  * *    ***  * 

consensus_4200#0      AACAA-AATTGCTAAAGAAGTTTGAATGATAATATATATT 442
consensus_4200#1      ACTTTTAATAACTGTTCACATTCAGATATGTGCACA---- 434
                      *     ***  **    *  **   **      * *