cluster # 4209

These datas are free for academic use only, please contact me for any other use.

Schistosoma mansoni
cluster # 4209 cluster # 4209 Sequences # 3 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_4209#0 length = 650 sequences # 2

consensus_4209#1 length = 386 sequences # 1

consensusID : consensus_4209#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 650
fasta sequence

                              [TGAGCGCGAACCACAACATTCGGCAACATGTAGAGATCCTAAATGAGAGTGGGAAGTTCAAGCGTTTACTCAGCCTTCTCAATTCCTTCGACAATGCTCGTGTACTTGTCTTTACGGAGACCAAAAAGCGTACAGACGAACTTTGTCAAAAACTCCAAGATAAGGGTTTTGATGCCACAGCTATGCATGGGGATAAACACCAGAAAGAGCGTGATCGTGCCCTAGACATGTTTCGTGAAGGTCACATATCTGTTCTCGTTGCCACAGATGTCGCATCTAGAGGCTTAGGGTGTGGTGAGTTTTGGCATTCTGGAGTCGTTGGAGCAATTGGCTCCATTATTGGCCTCTGGTTAAACTGGTATAATTTGGTTTCGCCAATCATTTGGTCGTGTATTGGACACAGATTATGTCTGGTCGACCGTCTTAACAGTTGGATTGGTACATTGGCTATTAGTGTAACGAACGATTTGGTGATATAAGAGAGTCACATGAACATCTTGTGTTAAATCATCCAACCTCAATCATCTCGTTCCTCTGGATACGTGTTGGTCCTAAGCTGGTTTTTGTAATTGGTTGGTGAACAAAGTTTCGTTCATTTGAATATTTGGATCGGTAAGCTTGGAACTATGTATTCGTGTCANAATTCTGGG]

[+] EMBL CD123590             [TGAGCGCGAACCACAACATTCGGCAACATGTAGAGATCCTAAATGAGAGTGGGAAGTTCAAGCGTTTACTCAGCCTTCTCAATTCCTTCGACAATGCTCGTGTACTTGTCTTTACGGAGACCAAAAAGCGTACAGACGAACTTTGTCAAAAACTCCAAGATAAGGGTTTTGATGCCACAGCTATGCATGGGGATAAACACCAGAAAGAGCGTGATCGTGCCCTAGACATGTTTCGTGAAGGTCACATATCTGTTCTCGTTGCCACAGATGTCGCATCTAGAGGCTTAGGGTGTGGTGAGTTTTGGCATTCTGGAGTCGTTGGAGCAATTGGCTCCATTATTGGCCTCTGGTTAAACTGGTATAATTTGGTTTCGCCAATCATTTGGTCGTGTATTGGACACAGATTATGTCTGGTCGACCGTCTTAACAGTTGGATTGGTACATTGGCTATTAGTGTAACGAACGATTTGGTGATATAAGAGAGTCACATGAACATCTTGTGTTAAATCATCCAACCTCAATCATCTCGTTCCTCTGGATACGTGTTGGTCCTAAGCTGGTTTTTGTAATTGGTTGGTGAACAAAGTTTCGTTCATTTGAATATTTGGATCGGTAAGCTTGGAACTATGTATTCGTGTCANAATTCTGGG]
[+] EMBL CD123568             [TGAGCGCGAACCACAACATTCGGCAACATGTAGAGATCCTAAATGAGAGTGGGAAGTTCAAGCGTTTACTCAGCCTTCTCAATTCCTTCGACAATGCTCGTGTACTTGTCTTTACGGAGACCAAAAAGCGTACAGACGAACTTTGTCAAAAACTCCAAGATAAGGGTTTTGATGCCACAGCTATGCATGGGGATAAACACCAGAAAGAGCGTGATCGTGCCCTAGACATGTTTCGTGAAGGTCACATATCTGTTCTCGTTGCCACAGATGTCGCATCTAGAGGCTTAGGGTGTGGTGAGTTTTGGCATTCTGGAGTCGTTGGAGCAATTGGCTCCATTATTGGCCTCTGGTTAAACTGGTATAATTTGGTTTCGCCAATCATTTGGTCGTGTATTGGACACAGATTATGTCTGGTCGACCGTCTTAACAGTTGGATTGGTACATTGGCTATTAGTGTAACGAACGATTTGGTGATATAAGAGAGTCACATGAACATCTTGTGTTAAATCATCCAACCTCAATCATCTCGTTCCTCTGGATACGTGTTGGTCCTAAGCTGGTTTTTGTAATTGGTTGGTGAACAAAGTTTCGTTCATTTGAATATTTGGATCGGGTAGCTTGGGACTATGTA                   ]




>consensus_4209#0
TGAGCGCGAACCACAACATTCGGCAACATGTAGAGATCCTAAATGAGAGTGGGAAGTTCA
AGCGTTTACTCAGCCTTCTCAATTCCTTCGACAATGCTCGTGTACTTGTCTTTACGGAGA
CCAAAAAGCGTACAGACGAACTTTGTCAAAAACTCCAAGATAAGGGTTTTGATGCCACAG
CTATGCATGGGGATAAACACCAGAAAGAGCGTGATCGTGCCCTAGACATGTTTCGTGAAG
GTCACATATCTGTTCTCGTTGCCACAGATGTCGCATCTAGAGGCTTAGGGTGTGGTGAGT
TTTGGCATTCTGGAGTCGTTGGAGCAATTGGCTCCATTATTGGCCTCTGGTTAAACTGGT
ATAATTTGGTTTCGCCAATCATTTGGTCGTGTATTGGACACAGATTATGTCTGGTCGACC
GTCTTAACAGTTGGATTGGTACATTGGCTATTAGTGTAACGAACGATTTGGTGATATAAG
AGAGTCACATGAACATCTTGTGTTAAATCATCCAACCTCAATCATCTCGTTCCTCTGGAT
ACGTGTTGGTCCTAAGCTGGTTTTTGTAATTGGTTGGTGAACAAAGTTTCGTTCATTTGA
ATATTTGGATCGGTAAGCTTGGAACTATGTATTCGTGTCANAATTCTGGG

consensusID : consensus_4209#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 386
fasta sequence

                              [AGTGATTGAGTAAACTCTGCCCTGGATGTGTTTGATGTACAAACAACTGGCTTCTCCTCCTTTTATGTCTTTGTATACACCATTGCTGAATGCTTTGTGCAAAAGCTGAAGTAGCATTTGAGCAAACTTTTTGGGCCATCTACCCTGAGTTGTTTTCCAGACTTTTGCTTGAGCATGACGACCAACGCCACCATTAAATCGGCGGAAAGGAATAATCTCTTTCTTCTCAATGACATTTTTTAAGTAAGTTTGTGCTCGCTGGAGAGTCATTCCCTTCACCGCACAAGCACACTCATGCATGTTTTTGAAATGAGTCCTCAGGTATGGGATTCTTGCTTTGCAAGTTTTACCTTCATCCTCATCTTTTGGTTCCCACGAGTACTTTA]

[+] EMBL CD190025             [AGTGATTGAGTAAACTCTGCCCTGGATGTGTTTGATGTACAAACAACTGGCTTCTCCTCCTTTTATGTCTTTGTATACACCATTGCTGAATGCTTTGTGCAAAAGCTGAAGTAGCATTTGAGCAAACTTTTTGGGCCATCTACCCTGAGTTGTTTTCCAGACTTTTGCTTGAGCATGACGACCAACGCCACCATTAAATCGGCGGAAAGGAATAATCTCTTTCTTCTCAATGACATTTTTTAAGTAAGTTTGTGCTCGCTGGAGAGTCATTCCCTTCACCGCACAAGCACACTCATGCATGTTTTTGAAATGAGTCCTCAGGTATGGGATTCTTGCTTTGCAAGTTTTACCTTCATCCTCATCTTTTGGTTCCCACGAGTACTTTA]




>consensus_4209#1
AGTGATTGAGTAAACTCTGCCCTGGATGTGTTTGATGTACAAACAACTGGCTTCTCCTCC
TTTTATGTCTTTGTATACACCATTGCTGAATGCTTTGTGCAAAAGCTGAAGTAGCATTTG
AGCAAACTTTTTGGGCCATCTACCCTGAGTTGTTTTCCAGACTTTTGCTTGAGCATGACG
ACCAACGCCACCATTAAATCGGCGGAAAGGAATAATCTCTTTCTTCTCAATGACATTTTT
TAAGTAAGTTTGTGCTCGCTGGAGAGTCATTCCCTTCACCGCACAAGCACACTCATGCAT
GTTTTTGAAATGAGTCCTCAGGTATGGGATTCTTGCTTTGCAAGTTTTACCTTCATCCTC
ATCTTTTGGTTCCCACGAGTACTTTA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_4209#0      TGAGCGCGAACCACAACATTCGGCAACATGTAGAGATCCTAAATGAGAGTGGGAAGTTCA 60
consensus_4209#1      ------------------------------------------------------------
                                                                                  

consensus_4209#0      AGCGTTTACTCAGCCTTCTCAATTCCTTCGACAATGCTCGTGTACTTGTCTTTACGGAGA 120
consensus_4209#1      ------------------------------------------------------------
                                                                                  

consensus_4209#0      CCAAAAAGCGTACAGACGAACTTTGTCAAAAACTCCAAGATAAGGGTTTTGATGCCACAG 180
consensus_4209#1      ------------------------------------------------------------
                                                                                  

consensus_4209#0      CTATGCATGGGGATAAACACCAGAAAGAGCGTGATCG-TGCCCTAGACATGTTTCGTGAA 239
consensus_4209#1      ---------------------AGTGATTGAGTAAACTCTGCCCTGGATGTGTTTGATGTA 39
                                           **  *  * ** * *  ****** **  *****  ** *

consensus_4209#0      GGTCACATATCTGTTCTCGTTGCCACAGATGTCGCATCTAGAGGCTTAGGGTGTGGTGAG 299
consensus_4209#1      ---CAAACAACTGGCTTCTCCTCCTTTTATGTC-TTTGTATACACC---ATTGCTGAATG 92
                         ** * * ***   **    **    *****   * ** *  *      **  *   *

consensus_4209#0      TTTTGGCATTCTGGAGTCGTTGGAGCAATTGGCTCCATTATTGGCCTCTGGTTAAACTGG 359
consensus_4209#1      CTTTG---TGCAAAAGCTGAAGTAGCATTTGAGCAAACT------TTTTGGGCCATCTAC 143
                       ****   * *   **  *  * **** ***     * *       * ***   * **  

consensus_4209#0      TATAATTTGGTTTCGCCAATCATTTGGTCGTGTATTGGACACAGATTATGTCTGGTCGAC 419
consensus_4209#1      CCTGAGTTGTTTTC--CAGACTTTTGCTTGAGCATG----ACGACCAACGCC------AC 191
                        * * *** ****  **  * **** * * * **     **     * * *      **

consensus_4209#0      CGTCTTAACAGTTGGATTGGTACATTGGCTATTAGTGTAACGAACGATTTGGTGATATAA 479
consensus_4209#1      CAT-TAAATCGGCGGAAAGGAATAATCTCTTTCTTCTCAATGACATTTTTTAAGTAAGTT 250
                      * * * **  *  ***  ** * * *  ** *      ** **    ***   *  *   

consensus_4209#0      GAGAGTCACATGAACATCTTGTGTTAAATCATCCAACCTCAATCATCTCGTTCCTCTGGA 539
consensus_4209#1      TGTGCTCGCTGGAGAGTCATTCCCTTCACCGCACAAGCACACTCATG-CATGTTTTTGAA 309
                           ** *  **   ** *    *  * *   *** * ** ****  * *   * ** *

consensus_4209#0      TACGTGTTGGTCCTAAGCTGGTTTTTGTAATTGGTTGGTGAACAAAGTTT-CGTTCATTT 598
consensus_4209#1      -----ATGAGTCCTCAGGTA-----TGGGATTC-TTGCTTTGCAAGTTTTACCTTCATCC 358
                            *  ***** ** *      **  ***  *** *   ***  *** * *****  

consensus_4209#0      GAATATTTGGATCGGTAAGCTTGGAACTATGTATTCGTGTCANAATTCTGGG 650
consensus_4209#1      TCATCTTTTGGTTCCCACG---AGTACTTTA--------------------- 386
                        ** *** * *    * *    * *** *