cluster # 424

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Schistosoma mansoni
cluster # 424 cluster # 424 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_424#0 length = 470 sequences # 1

consensus_424#1 length = 440 sequences # 1

consensusID : consensus_424#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 470
fasta sequence

                              [GGTTGCATTCAATTGAGTTGTTAGCCAAGGGGGTCCCACTGAGATTCCCAAACTACCCAGGCTGCTGCTAAGACAAGGCGTGCTCTCTGAATGCTGACAGCAGGGCCCCATCTCTGAGGACAGCACCCACACAACTCATTGCACATGGAGACGCTGAGTTGATGCCCACCTGGGGCCTTCGTCTCTGCATTCCAGTGTCTTTGATGCTGGCAGACACTCTGCAGAGAAATGGAAACACCAATCTAGCCACAAAACCTTTGACTAACATCTGTCCTGTCTGCAAAACATGCTTAGGCAATGGTGGCACAAAAGCTTGTGGAGGGCTAGAGAGACGGCTCAGTGGTTAAGAGCACTGGCTGCTCTTCTGGAGGTCCTGAGTTCAATTCCCAGCAACCACATGACAGCTCACAACTGACTATAACTCCAGTTCCAGGGGATCCTTCACTCTCACACAGATATGCAGGCAAAAC]

[+] EMBL AI740377             [GGTTGCATTCAATTGAGTTGTTAGCCAAGGGGGTCCCACTGAGATTCCCAAACTACCCAGGCTGCTGCTAAGACAAGGCGTGCTCTCTGAATGCTGACAGCAGGGCCCCATCTCTGAGGACAGCACCCACACAACTCATTGCACATGGAGACGCTGAGTTGATGCCCACCTGGGGCCTTCGTCTCTGCATTCCAGTGTCTTTGATGCTGGCAGACACTCTGCAGAGAAATGGAAACACCAATCTAGCCACAAAACCTTTGACTAACATCTGTCCTGTCTGCAAAACATGCTTAGGCAATGGTGGCACAAAAGCTTGTGGAGGGCTAGAGAGACGGCTCAGTGGTTAAGAGCACTGGCTGCTCTTCTGGAGGTCCTGAGTTCAATTCCCAGCAACCACATGACAGCTCACAACTGACTATAACTCCAGTTCCAGGGGATCCTTCACTCTCACACAGATATGCAGGCAAAAC]




>consensus_424#0
GGTTGCATTCAATTGAGTTGTTAGCCAAGGGGGTCCCACTGAGATTCCCAAACTACCCAG
GCTGCTGCTAAGACAAGGCGTGCTCTCTGAATGCTGACAGCAGGGCCCCATCTCTGAGGA
CAGCACCCACACAACTCATTGCACATGGAGACGCTGAGTTGATGCCCACCTGGGGCCTTC
GTCTCTGCATTCCAGTGTCTTTGATGCTGGCAGACACTCTGCAGAGAAATGGAAACACCA
ATCTAGCCACAAAACCTTTGACTAACATCTGTCCTGTCTGCAAAACATGCTTAGGCAATG
GTGGCACAAAAGCTTGTGGAGGGCTAGAGAGACGGCTCAGTGGTTAAGAGCACTGGCTGC
TCTTCTGGAGGTCCTGAGTTCAATTCCCAGCAACCACATGACAGCTCACAACTGACTATA
ACTCCAGTTCCAGGGGATCCTTCACTCTCACACAGATATGCAGGCAAAAC

consensusID : consensus_424#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 440
fasta sequence

                              [ACGTAACATTCAAATCAATGAGTGATCAGGCTGCTGCTAAGACAAGGCGTGCTCTCTGAATGCTGACAGCAGGGCCCCATCTCTGAGGACAGCACCCACACAACTCATTGCACATGGAGACGCTGAGTTGATGCCCACCTGGGGCCTTCGTCTCTGCATTCCAGTGTCTTTGATGCTGGCAGACACTCTGCAGAGAAATGGAAACACCAATCTAGCCACAAAACCTTTGACTAACATCTGTCCTGTCTGCAAAACATGCTTAGGCAATGGTGGCACAAAAGCTTGTGGAGGGCTAGAGAGACGGCTCAGTGGTTAAGAGCACTGGCTGCTCTTCTGGAGGTCCTGAGTTCAATTCCCAGCAACCACATGACAGCTCACAACTGACTATAACTCCAGTTCCAGGGGATCCTTCACTCTCACACAGATATGCAGGCAAAACA]

[+] EMBL AI740376             [ACGTAACATTCAAATCAATGAGTGATCAGGCTGCTGCTAAGACAAGGCGTGCTCTCTGAATGCTGACAGCAGGGCCCCATCTCTGAGGACAGCACCCACACAACTCATTGCACATGGAGACGCTGAGTTGATGCCCACCTGGGGCCTTCGTCTCTGCATTCCAGTGTCTTTGATGCTGGCAGACACTCTGCAGAGAAATGGAAACACCAATCTAGCCACAAAACCTTTGACTAACATCTGTCCTGTCTGCAAAACATGCTTAGGCAATGGTGGCACAAAAGCTTGTGGAGGGCTAGAGAGACGGCTCAGTGGTTAAGAGCACTGGCTGCTCTTCTGGAGGTCCTGAGTTCAATTCCCAGCAACCACATGACAGCTCACAACTGACTATAACTCCAGTTCCAGGGGATCCTTCACTCTCACACAGATATGCAGGCAAAACA]




>consensus_424#1
ACGTAACATTCAAATCAATGAGTGATCAGGCTGCTGCTAAGACAAGGCGTGCTCTCTGAA
TGCTGACAGCAGGGCCCCATCTCTGAGGACAGCACCCACACAACTCATTGCACATGGAGA
CGCTGAGTTGATGCCCACCTGGGGCCTTCGTCTCTGCATTCCAGTGTCTTTGATGCTGGC
AGACACTCTGCAGAGAAATGGAAACACCAATCTAGCCACAAAACCTTTGACTAACATCTG
TCCTGTCTGCAAAACATGCTTAGGCAATGGTGGCACAAAAGCTTGTGGAGGGCTAGAGAG
ACGGCTCAGTGGTTAAGAGCACTGGCTGCTCTTCTGGAGGTCCTGAGTTCAATTCCCAGC
AACCACATGACAGCTCACAACTGACTATAACTCCAGTTCCAGGGGATCCTTCACTCTCAC
ACAGATATGCAGGCAAAACA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_424#0      GGTTGCATTCAATTGAGTTGTTAGCCAAGGGGGTCCCACTGAGATTCCCAAACTACCCAG 60
consensus_424#1      ------------------------------ACGTAACATTCAAATCAATGAG-TGATCAG 29
                                                     **  ** * * **     *  *   ***

consensus_424#0      GCTGCTGCTAAGACAAGGCGTGCTCTCTGAATGCTGACAGCAGGGCCCCATCTCTGAGGA 120
consensus_424#1      GCTGCTGCTAAGACAAGGCGTGCTCTCTGAATGCTGACAGCAGGGCCCCATCTCTGAGGA 89
                     ************************************************************

consensus_424#0      CAGCACCCACACAACTCATTGCACATGGAGACGCTGAGTTGATGCCCACCTGGGGCCTTC 180
consensus_424#1      CAGCACCCACACAACTCATTGCACATGGAGACGCTGAGTTGATGCCCACCTGGGGCCTTC 149
                     ************************************************************

consensus_424#0      GTCTCTGCATTCCAGTGTCTTTGATGCTGGCAGACACTCTGCAGAGAAATGGAAACACCA 240
consensus_424#1      GTCTCTGCATTCCAGTGTCTTTGATGCTGGCAGACACTCTGCAGAGAAATGGAAACACCA 209
                     ************************************************************

consensus_424#0      ATCTAGCCACAAAACCTTTGACTAACATCTGTCCTGTCTGCAAAACATGCTTAGGCAATG 300
consensus_424#1      ATCTAGCCACAAAACCTTTGACTAACATCTGTCCTGTCTGCAAAACATGCTTAGGCAATG 269
                     ************************************************************

consensus_424#0      GTGGCACAAAAGCTTGTGGAGGGCTAGAGAGACGGCTCAGTGGTTAAGAGCACTGGCTGC 360
consensus_424#1      GTGGCACAAAAGCTTGTGGAGGGCTAGAGAGACGGCTCAGTGGTTAAGAGCACTGGCTGC 329
                     ************************************************************

consensus_424#0      TCTTCTGGAGGTCCTGAGTTCAATTCCCAGCAACCACATGACAGCTCACAACTGACTATA 420
consensus_424#1      TCTTCTGGAGGTCCTGAGTTCAATTCCCAGCAACCACATGACAGCTCACAACTGACTATA 389
                     ************************************************************

consensus_424#0      ACTCCAGTTCCAGGGGATCCTTCACTCTCACACAGATATGCAGGCAAAAC- 470
consensus_424#1      ACTCCAGTTCCAGGGGATCCTTCACTCTCACACAGATATGCAGGCAAAACA 440
                     **************************************************