These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_4243#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 458 fasta sequence [ACTGGTCAGAGCAATTAAGCTCCAAAGGCAAGATATACTTTTACAACTGTATGACTGAGGTTTCCCAATGGCAAAAGCCTCCGGAGTGGGATTTACCTGAAATGAACAGGAGAGATCTACTAAAGCTGCTCAGTGATCATAAACACACTGAAGGTACCTCTCAAAATGTGCCTCACTTATTTTAGAAAACAATCTGAAAAGATCACATAGTATATCCGAAAGTGAACCTGGTGCAATTTAAAGATGAACGTTCACTTCTATCTAGTGAACTAAAACGCATAAAGTATTCGGTTAATGCGGAAGTTCGGCGTCCAAGTTCATCACATCTGAGCATTAATATGTCCAACCATACCGCTGATGTATGTCATATTACAGGAATTTCCCACAATGACGAAAAAAACCATGGTTTGTCGCTATTTGTGCTAACATGGCTTTCCGATTAGTTAGCCGTCCTGTGT] [+] EMBL CD066531 [ACTGGTCAGAGCAATTAAGCTCCAAAGGCAAGATATACTTTTACAACTGTATGACTGAGGTTTCCCAATGGCAAAAGCCTCCGGAGTGGGATTTACCTGAAATGAACAGGAGAGATCTACTAAAGCTGCTCAGTGATCATAAACACACTGAAGGTACCTCTCAAAATGTGCCTCACTTATTTTAGAAAACAATCTGAAAAGATCACATAGTATATCCGAAAGTGAACCTGGTGCAATTTAAAGATGAACGTTCACTTCTATCTAGTGAACTAAAACGCATAAAGTATTCGGTTAATGCGGAAGTTCGGCGTCCAAGTTCATCACATCTGAGCATTAATATGTCCAACCATACCGCTGATGTATGTCATATTACAGGAATTTCCCACAATGACGAAAAAAACCATGGTTTGTCGCTATTTGTGCTAACATGGCTTTCCGATTAGTTAGCCGTCCTGTGT] [+] EMBL CD066877 [ACTGGTCAGAGCAATTAAGCTCCAAAGGCAAGATATACTTTTACAACTGTATGACTGAGGTTTCCCAATGGCAAAAGCCTCCGGAGTGGGATTTACCTGAAATGAACATGAGAGATCTACTAAAGCTGCTCAGTGATCATAAACACACTGAAGGTACCTCTCAAAATGTGCCTCACTTATTTTAGAAAACAATCTGAAAAGATCACATAGTATATCCGAAAGTGAACCTGGTGCAA TTAAAGATGAACGTTCACTTCTATCTAGTGAACTAAAACGCATAAAGTATTCGGTTAATGCGGAGGTTCGGCGTCCAAGTTCATCACATCTGAG ] consensusID : consensus_4243#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 380 fasta sequence [AAAGGCAAGATATACTTTTACAACTGTATGACTGAGGTTTCCCAATGGCAAAAGCCTCCGGAGTGGGATTTACCTGAAATGAACAGGAGAGATCTACTAAAGCTGCTCGGTGATCGTAAACACACTGAAGAAAACAATCTGAAAAGATCACATAGTATATCCGAAAGTGAACCTGGTGCAATTAAAGATGAACGTTCACTTCTATCTAGTGAACTAAAACGCATAAAGTATTCGGTTAATGCGGAGGTTCGGCGTCCAAGTTCATCACATCTGAGCATTAATATGTCCAACCATACCGCTGATGTAGGTCATATTACAGGAATTTCCCACAATGACGAAAAAAACCATGGTTTGTCGCTATTTGTGCTAACATGGCTTTC] [-] EMBL CD160020 [AAAGGCAAGATATACTTTTACAACTGTATGACTGAGGTTTCCCAATGGCAAAAGCCTCCGGAGTGGGATTTACCTGAAATGAACAGGAGAGATCTACTAAAGCTGCTCGGTGATCGTAAACACACTGAAGAAAACAATCTGAAAAGATCACATAGTATATCCGAAAGTGAACCTGGTGCAATTAAAGATGAACGTTCACTTCTATCTAGTGAACTAAAACGCATAAAGTATTCGGTTAATGCGGAGGTTCGGCGTCCAAGTTCATCACATCTGAGCATTAATATGTCCAACCATACCGCTGATGTAGGTCATATTACAGGAATTTCCCACAATGACGAAAAAAACCATGGTTTGTCGCTATTTGTGCTAACATGGCTTTC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_4243#0 ACTGGTCAGAGCAATTAAGCTCCAAAGGCAAGATATACTTTTACAACTGTATGACTGAGG 60 consensus_4243#1 -----------------------AAAGGCAAGATATACTTTTACAACTGTATGACTGAGG 37 ************************************* consensus_4243#0 TTTCCCAATGGCAAAAGCCTCCGGAGTGGGATTTACCTGAAATGAACAGGAGAGATCTAC 120 consensus_4243#1 TTTCCCAATGGCAAAAGCCTCCGGAGTGGGATTTACCTGAAATGAACAGGAGAGATCTAC 97 ************************************************************ consensus_4243#0 TAAAGCTGCTCAGTGATCATAAACACACTGAAGGTACCTCTCAAAATGTGCCTCACTTAT 180 consensus_4243#1 TAAAGCTGCTCGGTGATCGTAAACACACTGAAG--------------------------- 130 *********** ****** ************** consensus_4243#0 TTTAGAAAACAATCTGAAAAGATCACATAGTATATCCGAAAGTGAACCTGGTGCAATTTA 240 consensus_4243#1 -----AAAACAATCTGAAAAGATCACATAGTATATCCGAAAGTGAACCTGGTGCAATT-A 184 ***************************************************** * consensus_4243#0 AAGATGAACGTTCACTTCTATCTAGTGAACTAAAACGCATAAAGTATTCGGTTAATGCGG 300 consensus_4243#1 AAGATGAACGTTCACTTCTATCTAGTGAACTAAAACGCATAAAGTATTCGGTTAATGCGG 244 ************************************************************ consensus_4243#0 AAGTTCGGCGTCCAAGTTCATCACATCTGAGCATTAATATGTCCAACCATACCGCTGATG 360 consensus_4243#1 AGGTTCGGCGTCCAAGTTCATCACATCTGAGCATTAATATGTCCAACCATACCGCTGATG 304 * ********************************************************** consensus_4243#0 TATGTCATATTACAGGAATTTCCCACAATGACGAAAAAAACCATGGTTTGTCGCTATTTG 420 consensus_4243#1 TAGGTCATATTACAGGAATTTCCCACAATGACGAAAAAAACCATGGTTTGTCGCTATTTG 364 ** ********************************************************* consensus_4243#0 TGCTAACATGGCTTTCCGATTAGTTAGCCGTCCTGTGT 458 consensus_4243#1 TGCTAACATGGCTTTC---------------------- 380 **************** |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||