cluster # 4243

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Schistosoma mansoni
cluster # 4243 cluster # 4243 Sequences # 3 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_4243#0 length = 458 sequences # 2

consensus_4243#1 length = 380 sequences # 1

consensusID : consensus_4243#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 458
fasta sequence

                              [ACTGGTCAGAGCAATTAAGCTCCAAAGGCAAGATATACTTTTACAACTGTATGACTGAGGTTTCCCAATGGCAAAAGCCTCCGGAGTGGGATTTACCTGAAATGAACAGGAGAGATCTACTAAAGCTGCTCAGTGATCATAAACACACTGAAGGTACCTCTCAAAATGTGCCTCACTTATTTTAGAAAACAATCTGAAAAGATCACATAGTATATCCGAAAGTGAACCTGGTGCAATTTAAAGATGAACGTTCACTTCTATCTAGTGAACTAAAACGCATAAAGTATTCGGTTAATGCGGAAGTTCGGCGTCCAAGTTCATCACATCTGAGCATTAATATGTCCAACCATACCGCTGATGTATGTCATATTACAGGAATTTCCCACAATGACGAAAAAAACCATGGTTTGTCGCTATTTGTGCTAACATGGCTTTCCGATTAGTTAGCCGTCCTGTGT]

[+] EMBL CD066531             [ACTGGTCAGAGCAATTAAGCTCCAAAGGCAAGATATACTTTTACAACTGTATGACTGAGGTTTCCCAATGGCAAAAGCCTCCGGAGTGGGATTTACCTGAAATGAACAGGAGAGATCTACTAAAGCTGCTCAGTGATCATAAACACACTGAAGGTACCTCTCAAAATGTGCCTCACTTATTTTAGAAAACAATCTGAAAAGATCACATAGTATATCCGAAAGTGAACCTGGTGCAATTTAAAGATGAACGTTCACTTCTATCTAGTGAACTAAAACGCATAAAGTATTCGGTTAATGCGGAAGTTCGGCGTCCAAGTTCATCACATCTGAGCATTAATATGTCCAACCATACCGCTGATGTATGTCATATTACAGGAATTTCCCACAATGACGAAAAAAACCATGGTTTGTCGCTATTTGTGCTAACATGGCTTTCCGATTAGTTAGCCGTCCTGTGT]
[+] EMBL CD066877             [ACTGGTCAGAGCAATTAAGCTCCAAAGGCAAGATATACTTTTACAACTGTATGACTGAGGTTTCCCAATGGCAAAAGCCTCCGGAGTGGGATTTACCTGAAATGAACATGAGAGATCTACTAAAGCTGCTCAGTGATCATAAACACACTGAAGGTACCTCTCAAAATGTGCCTCACTTATTTTAGAAAACAATCTGAAAAGATCACATAGTATATCCGAAAGTGAACCTGGTGCAA TTAAAGATGAACGTTCACTTCTATCTAGTGAACTAAAACGCATAAAGTATTCGGTTAATGCGGAGGTTCGGCGTCCAAGTTCATCACATCTGAG                                                                                                                               ]




>consensus_4243#0
ACTGGTCAGAGCAATTAAGCTCCAAAGGCAAGATATACTTTTACAACTGTATGACTGAGG
TTTCCCAATGGCAAAAGCCTCCGGAGTGGGATTTACCTGAAATGAACAGGAGAGATCTAC
TAAAGCTGCTCAGTGATCATAAACACACTGAAGGTACCTCTCAAAATGTGCCTCACTTAT
TTTAGAAAACAATCTGAAAAGATCACATAGTATATCCGAAAGTGAACCTGGTGCAATTTA
AAGATGAACGTTCACTTCTATCTAGTGAACTAAAACGCATAAAGTATTCGGTTAATGCGG
AAGTTCGGCGTCCAAGTTCATCACATCTGAGCATTAATATGTCCAACCATACCGCTGATG
TATGTCATATTACAGGAATTTCCCACAATGACGAAAAAAACCATGGTTTGTCGCTATTTG
TGCTAACATGGCTTTCCGATTAGTTAGCCGTCCTGTGT

consensusID : consensus_4243#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 380
fasta sequence

                              [AAAGGCAAGATATACTTTTACAACTGTATGACTGAGGTTTCCCAATGGCAAAAGCCTCCGGAGTGGGATTTACCTGAAATGAACAGGAGAGATCTACTAAAGCTGCTCGGTGATCGTAAACACACTGAAGAAAACAATCTGAAAAGATCACATAGTATATCCGAAAGTGAACCTGGTGCAATTAAAGATGAACGTTCACTTCTATCTAGTGAACTAAAACGCATAAAGTATTCGGTTAATGCGGAGGTTCGGCGTCCAAGTTCATCACATCTGAGCATTAATATGTCCAACCATACCGCTGATGTAGGTCATATTACAGGAATTTCCCACAATGACGAAAAAAACCATGGTTTGTCGCTATTTGTGCTAACATGGCTTTC]

[-] EMBL CD160020             [AAAGGCAAGATATACTTTTACAACTGTATGACTGAGGTTTCCCAATGGCAAAAGCCTCCGGAGTGGGATTTACCTGAAATGAACAGGAGAGATCTACTAAAGCTGCTCGGTGATCGTAAACACACTGAAGAAAACAATCTGAAAAGATCACATAGTATATCCGAAAGTGAACCTGGTGCAATTAAAGATGAACGTTCACTTCTATCTAGTGAACTAAAACGCATAAAGTATTCGGTTAATGCGGAGGTTCGGCGTCCAAGTTCATCACATCTGAGCATTAATATGTCCAACCATACCGCTGATGTAGGTCATATTACAGGAATTTCCCACAATGACGAAAAAAACCATGGTTTGTCGCTATTTGTGCTAACATGGCTTTC]




>consensus_4243#1
AAAGGCAAGATATACTTTTACAACTGTATGACTGAGGTTTCCCAATGGCAAAAGCCTCCG
GAGTGGGATTTACCTGAAATGAACAGGAGAGATCTACTAAAGCTGCTCGGTGATCGTAAA
CACACTGAAGAAAACAATCTGAAAAGATCACATAGTATATCCGAAAGTGAACCTGGTGCA
ATTAAAGATGAACGTTCACTTCTATCTAGTGAACTAAAACGCATAAAGTATTCGGTTAAT
GCGGAGGTTCGGCGTCCAAGTTCATCACATCTGAGCATTAATATGTCCAACCATACCGCT
GATGTAGGTCATATTACAGGAATTTCCCACAATGACGAAAAAAACCATGGTTTGTCGCTA
TTTGTGCTAACATGGCTTTC

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_4243#0      ACTGGTCAGAGCAATTAAGCTCCAAAGGCAAGATATACTTTTACAACTGTATGACTGAGG 60
consensus_4243#1      -----------------------AAAGGCAAGATATACTTTTACAACTGTATGACTGAGG 37
                                             *************************************

consensus_4243#0      TTTCCCAATGGCAAAAGCCTCCGGAGTGGGATTTACCTGAAATGAACAGGAGAGATCTAC 120
consensus_4243#1      TTTCCCAATGGCAAAAGCCTCCGGAGTGGGATTTACCTGAAATGAACAGGAGAGATCTAC 97
                      ************************************************************

consensus_4243#0      TAAAGCTGCTCAGTGATCATAAACACACTGAAGGTACCTCTCAAAATGTGCCTCACTTAT 180
consensus_4243#1      TAAAGCTGCTCGGTGATCGTAAACACACTGAAG--------------------------- 130
                      *********** ****** **************                           

consensus_4243#0      TTTAGAAAACAATCTGAAAAGATCACATAGTATATCCGAAAGTGAACCTGGTGCAATTTA 240
consensus_4243#1      -----AAAACAATCTGAAAAGATCACATAGTATATCCGAAAGTGAACCTGGTGCAATT-A 184
                           ***************************************************** *

consensus_4243#0      AAGATGAACGTTCACTTCTATCTAGTGAACTAAAACGCATAAAGTATTCGGTTAATGCGG 300
consensus_4243#1      AAGATGAACGTTCACTTCTATCTAGTGAACTAAAACGCATAAAGTATTCGGTTAATGCGG 244
                      ************************************************************

consensus_4243#0      AAGTTCGGCGTCCAAGTTCATCACATCTGAGCATTAATATGTCCAACCATACCGCTGATG 360
consensus_4243#1      AGGTTCGGCGTCCAAGTTCATCACATCTGAGCATTAATATGTCCAACCATACCGCTGATG 304
                      * **********************************************************

consensus_4243#0      TATGTCATATTACAGGAATTTCCCACAATGACGAAAAAAACCATGGTTTGTCGCTATTTG 420
consensus_4243#1      TAGGTCATATTACAGGAATTTCCCACAATGACGAAAAAAACCATGGTTTGTCGCTATTTG 364
                      ** *********************************************************

consensus_4243#0      TGCTAACATGGCTTTCCGATTAGTTAGCCGTCCTGTGT 458
consensus_4243#1      TGCTAACATGGCTTTC---------------------- 380
                      ****************