These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_4246#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 537 fasta sequence [GGTTCTCCGCGAAATCTATTTAGGTAGAGCCTCGAGTGAATACCTTGCGGGGTAGAGCACTGGAAGGGCTAGGGGGTCTTACCGATCTACCAATCCCTACCAAACTCCGAATACGCAAGAGTACTGCTCGGGAGACACACGGCGGGTGCTAACGTCCGTCGTGAAAAGGGAAACAACCCTAATCGCCAGTTAAGGCCCCTAAGTCATGGCTAAGTGGGAAAGGATGTGGAAATCCATAAACAACCAGGAGGTTGGCTTAGAAGCAGCCATCCTTTAAAGAAAGCGTAACAGCTCACTGGTCTAGGGTTTCTGCGCCGAAGATGTACCGGGGCTCAAGCCATGCGCCGAAACTGCGAACTCCTGCGGGAGTGGTAGCGGAGCGTTCCGTAAGCCTGCGAAGGGACAGCCGTGAGGCATCCTGGAGGTATCGGAAGTGCGAATGCAGACATGAGTAACGCGAAAAAGTGTGAGAGACACTTTCGCCGTAAGTCCAAGGGTTCCTGCGTAAAGCTAATCTGCGCAGGGTCAGCCGGTCCC] [+] EMBL CD086887 [GGTTCTCCGCGAAATCTATTTAGGTAGAGCCTCGAGTGAATACCTTGCGGGGTAGAGCACTGGAAGGGCTAGGGGGTCTTACCGATCTACCAATCCCTACCAAACTCCGAATACGCAAGAGTACTGCTCGGGAGACACACGGCGGGTGCTAACGTCCGTCGTGAAAAGGGAAACAACCCTAATCGCCAGTTAAGGCCCCTAAGTCATGGCTAAGTGGGAAAGGATGTGGAAATCCATAAACAACCAGGAGGTTGGCTTAGAAGCAGCCATCCTTTAAAGAAAGCGTAACAGCTCACTGGTCTAGGGTTTCTGCGCCGAAGATGTACCGGGGCTCAAGCCATGCGCCGAAACTGCGAACTCCTGCGGGAGTGGTAGCGGAGCGTTCCGTAAGCCTGCGAAGGGACAGCCGTGAGGCATCCTGGAGGTATCGGAAGTGCGAATGCAGACATGAGTAACGCGAAAAAGTGTGAGAGACACTTTCGCCGTAAGTCCAAGGGTTCCTGCGTAAAGCTAATCTGCGCAGGGTCAGCCGGTCCC] [+] EMBL CD086862 [GGTTCTCCGCGAAATCTATTTAGGTAGAGCCTCGAGTGAATACCTTGCGGGGTAGAGCACTGGAAGGGCTAGGGGGTCTTACCGATCTACCAATCCCTACCAAACTCCGAATACGCAAGAGTACTGCTCGGGAGACACACGGCGGGTGCTAACGTCCGTCGTGAAAAGGGAAACAACCCTAATCGCCAGTTAAGGCCCCTAAGTCATGGCTAAGTGGGAAAGGATGTGGAAATCCATAAACAACCAGGAGGTTGGCTTAGAAGCAGCCATCCTTTAAAGAAAGCGTAACAGCTCACTGGTCTAGGGTTTCTGCGCCGAAGATGTACCGGGGCTCAAGCCATGCGCCGAAACTGCGAACTCCTGCGGGAGTGGTAGCGGAGCGTTCCGTAAGCCTGCGAAGGGACAGCCGTGAGGCATCCTGGAGGTATCGGAAGTG ] consensusID : consensus_4246#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 406 fasta sequence [TCAGCGACTTAAAGTAGCGAGCAAGCATAAGCCGATAGGTGGATGCGCAGCGAAAGCGAGTCTGAACAGGGCGTTCAGTTCGTTGCTTTAGACCCGAAACCTAGTGATCTAGCCATGTGCAGGATGAAGGTGAGGTAACACTCACTGGAGGTCCGAACCGGTGCCTGTTGAAAAAGGCTCGGATGATGTGTGGCTAGGGGTGAAAGGCCAATCAAACTGGGAAATAGCTGGTTCTCCGCGAAATCTATTTAGGTAGAGCCTCGGATGAATACCTCAGGGGGTAGAGCTACTGGAAGGGCTAGGGGGTCTTACCGATCTACCGATCCCTACCAAACTCCGAATACCTGAGAGTACTATCCGGGAGACACACGGCGGGTGCTAACGTCCGTCGTGAAAAGGGAAACAA] [-] EMBL CD084571 [TCAGCGACTTAAAGTAGCGAGCAAGCATAAGCCGATAGGTGGATGCGCAGCGAAAGCGAGTCTGAACAGGGCGTTCAGTTCGTTGCTTTAGACCCGAAACCTAGTGATCTAGCCATGTGCAGGATGAAGGTGAGGTAACACTCACTGGAGGTCCGAACCGGTGCCTGTTGAAAAAGGCTCGGATGATGTGTGGCTAGGGGTGAAAGGCCAATCAAACTGGGAAATAGCTGGTTCTCCGCGAAATCTATTTAGGTAGAGCCTCGGATGAATACCTCAGGGGGTAGAGCTACTGGAAGGGCTAGGGGGTCTTACCGATCTACCGATCCCTACCAAACTCCGAATACCTGAGAGTACTATCCGGGAGACACACGGCGGGTGCTAACGTCCGTCGTGAAAAGGGAAACAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_4246#0 --GGTTCTCCGCGAAATCTATTTAGGTAGAGCCT-CGAGTGAATACCTTGCGGGGTAGAG 57 consensus_4246#1 TCAGCGACTTAAAGTAGCGAGCAAGCATAAGCCGATAGGTGGATGCGCAGCGAAAGCGAG 60 * * * * ** **** *** ** * *** *** consensus_4246#0 CACTGGAAGGGCTAGGGGGTCTTACCGATCTACC-AATCCCTACCAAACTCCGAATACGC 116 consensus_4246#1 TCTGAACAGGGCGTTCAGTTCGTTGCTTTAGACCCGAAACCTAGTGATCTAGCCATGTGC 120 ***** * ** * * * *** * **** * ** ** ** consensus_4246#0 AAGAGTACTGCTCGGGAG-ACACACGGCGGGTGCTAAC--GTCCGTCGTGAAAAGGGAAA 173 consensus_4246#1 AGGATGAAGGTGAGGTAACACTCACTGGAGGTCCGAACCGGTGCCTGTTGAAAAAGGCTC 180 * ** * * ** * ** *** * *** * *** ** * * ****** ** consensus_4246#0 CAACCCTAATCGCCAGTTAAGGCCCCTAAGTCATGGCTAAGTGGGAAAGGATGTGGAAAT 233 consensus_4246#1 GGA---TGATGTGTGGCTAGGGGTGAAAGGCCA--ATCAAACTGGGAAATAGCTGGTTCT 235 * * ** * ** ** * * ** ** ** ** * *** * consensus_4246#0 CCATAAACAACCAGGAGGTTGGCTTAGAAGCAGCCATCCTTTAAAGAAAGCGTAACAGCT 293 consensus_4246#1 CCGCGAAATCTATTTAGGTAGAGCCTCGGATGAATACCTC----AGGGGGTAGAGCTACT 291 ** ** **** * * * ** * * * ** consensus_4246#0 CACTGGTCTAGGGTTTCTGCGCCGAAGATGTACCGGGGCTCAAGCCATGCGCCGAA-ACT 352 consensus_4246#1 GGAAGGGCTAGGGGGTCT-TACCGA---TCTACCGATCCCTA--CCAAACTCCGAATACC 345 ** ****** *** **** * ***** * * *** * ***** ** consensus_4246#0 GCGAACTCCTGCGGGAGTGGTA-GCGGAGCGTTCCGTAAGCCTGCGAAGGGACAGCCGTG 411 consensus_4246#1 TGAGAGTACTATCCGGGAGACACACGGCGGGTGCTAACGTCCGTCGTGAAAAGGGAAACA 405 * * ** * * * * *** * ** * ** ** * * consensus_4246#0 AGGCATCCTGGAGGTATCGGAAGTGCGAATGCAGACATGAGTAACGCGAAAAAGTGTGAG 471 consensus_4246#1 A----------------------------------------------------------- 406 * consensus_4246#0 AGACACTTTCGCCGTAAGTCCAAGGGTTCCTGCGTAAAGCTAATCTGCGCAGGGTCAGCC 531 consensus_4246#1 ------------------------------------------------------------ consensus_4246#0 GGTCCC 537 consensus_4246#1 ------ |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||