These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_4263#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 720 fasta sequence [CTCGNAGACCAAAATTGGGCACGAGGTTTTCATTCGCTGCATCTGAATTTGTAAATTTTCGTTGGATTGAATTCAAGTCTTTGGCTGAAATGGAACAACTTAGTTATTCTGTTAGTGAATCCAAAGATGATTGGTTGAGACCATTTGTTGTGATCGAAATGGAAAATGATGATTCTGTTTTGTCAATTATTAAACGCAGCGTTTTAATCAAGTCTGCTTTTCATTTATGGTGTGATGCAGCAACCTTATCAGAATTAATTGAACAGGTTGCCAATCTTCCTAGTGAGTTGGTAGATCCTTATTTAAATGGTTGTGACACTTTCAAAATAGTCTTAAGTTCTGCACATAAGAAGCTCAAACAAGAGGAGAAAATACCTATAATAGAGACTATTCTTGATGCCCATAAGAGAATCGACGCTCAAGTTTCTTTATCATCACCAGATCATCAAATCAACATTCTACTAGAATACACCCCTAAGAACCTTGGAAAGAATACAGTTAGCTCTGGGGGTCATTTGTGTCGACTTTTATATGGACGGTTGATTGGAGGCAGTATAAGGAGAATTATGATGAACGACTATCGTCTATCAGAAAGAGCTCACTTAGGCAATACAACTATGAATGTGACATTAGCAGCAATAATGGCTAATGTGGGGCTTTGTCGAAATCGTCTTTCGTTTGGGATCCTTTTATTGGTACCGGAAGTACAGNTATAGCAGC] [+] EMBL CD081221 [CTCGNAGACCAAAATTGGGCACGAGGTTTTCATTCGCTGCATCTGAATTTGTAAATTTTCGTTGGATTGAATTCAAGTCTTTGGCTGAAATGGAACAACTTAGTTATTCTGTTAGTGAATCCAAAGATGATTGGTTGAGACCATTTGTTGTGATCGAAATGGAAAATGATGATTCTGTTTTGTCAATTATTAAACGCAGCGTTTTAATCAAGTCTGCTTTTCATTTATGGTGTGATGCAGCAACCTTATCAGAATTAATTGAACAGGTTGCCAATCTTCCTAGTGAGTTGGTAGATCCTTATTTAAATGGTTGTGACACTTTCAAAATAGTCTTAAGTTCTGCACATAAGAAGCTCAAACAAGAGGAGAAAATACCTATAATAGAGACTATTCTTGATGCCCATAAGAGAATCGACGCTCAAGTTTCTTTATCATCACCAGATCATCAAATCAACATTCTACTAGAATACACCCCTAAGAACCTTGGAAAGAATACAGTTAGCTCTGGGGGTCATTTGTGTCGACTTTTATATGGACGGTTGATTGGAGGCAGTATAAGGAGAATTATGATGAACGACTATCGTCTATCAGAAAGAGCTCACTTAGGCAATACAACTATGAATGTGACATTAGCAGCAATAATGGCTAATGTGGGGCTTTGTCGAAATCGTCTTTCGTTTGGGATCCTTTTATTGGTACCGGAAGTACAGNTATAGCAGC] [-] EMBL CD164836 [ TTGTCAATTATTAAACGCAGCGTTTTAATCAAGTCTGCTTTTCATTTATGGTGTGATGCAGCAACCTTATCAGAATTAATTGAACAGGTTGCCAATCTTCCTAGTGAGTTGGTAGATCCTTATTTAAATGGTTGTGACACTTTCAAAATAGTCTTAAGTTCTGCACATAAGAAGCTCAAACAAGAGGAGAAAATACCTATAATAGAGACTATTCTTGATGCCCATAAGAGAATCGACGCTCAAGTTTCTTTATCATCACCAGATCATCAAATCAACATTCTACTTGAATACACCCCTAAGAACCTTGGAAAGAATACAGTTAGCTCTGGGGGTCATTTGTGTCGACTTTTATATGGACGGTTGATTGGAGGCAGTATAAGGAGAATTATGATGAACGACTATCGTCTATCAGAAAGAGCTCACTTAGGCAATACAACTATGAAT ] consensusID : consensus_4263#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 255 fasta sequence [GTGTTAATTCAGTTTGTGGGAAATACATAATTACCAAGTACGCAAAATTCAGTACTGGACGCTGTTTATATGTTTCTCAATCAAAAGCTAAAATGAAAAAATATGTATTTTCATTCGCTGCATCTGAGTTTGTAAATTTTCGTTGGATTGAATTCAAGTCTTTGGCTGAAATGGAACAACTTAGTTATTCTGTTAGTGAATCCAAAGATGATTGGTTGAGACCATTTGTTGTGATCGAAATGGAAAATGATGATT] [+] EMBL CD152563 [GTGTTAATTCAGTTTGTGGGAAATACATAATTACCAAGTACGCAAAATTCAGTACTGGACGCTGTTTATATGTTTCTCAATCAAAAGCTAAAATGAAAAAATATGTATTTTCATTCGCTGCATCTGAGTTTGTAAATTTTCGTTGGATTGAATTCAAGTCTTTGGCTGAAATGGAACAACTTAGTTATTCTGTTAGTGAATCCAAAGATGATTGGTTGAGACCATTTGTTGTGATCGAAATGGAAAATGATGATT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_4263#0 ------------------------------------------------------------ consensus_4263#1 GTGTTAATTCAGTTTGTGGGAAATACATAATTACCAAGTACGCAAAATTCAGTACTGGAC 60 consensus_4263#0 -------------------CTCGNAGACCAAAATTGGGCACGAGGT--TTTCATTCGCTG 39 consensus_4263#1 GCTGTTTATATGTTTCTCAATCAAAAGCTAAAATGAAAAAATATGTATTTTCATTCGCTG 120 ** * * ***** * * ** ************ consensus_4263#0 CATCTGAATTTGTAAATTTTCGTTGGATTGAATTCAAGTCTTTGGCTGAAATGGAACAAC 99 consensus_4263#1 CATCTGAGTTTGTAAATTTTCGTTGGATTGAATTCAAGTCTTTGGCTGAAATGGAACAAC 180 ******* **************************************************** consensus_4263#0 TTAGTTATTCTGTTAGTGAATCCAAAGATGATTGGTTGAGACCATTTGTTGTGATCGAAA 159 consensus_4263#1 TTAGTTATTCTGTTAGTGAATCCAAAGATGATTGGTTGAGACCATTTGTTGTGATCGAAA 240 ************************************************************ consensus_4263#0 TGGAAAATGATGATTCTGTTTTGTCAATTATTAAACGCAGCGTTTTAATCAAGTCTGCTT 219 consensus_4263#1 TGGAAAATGATGATT--------------------------------------------- 255 *************** consensus_4263#0 TTCATTTATGGTGTGATGCAGCAACCTTATCAGAATTAATTGAACAGGTTGCCAATCTTC 279 consensus_4263#1 ------------------------------------------------------------ consensus_4263#0 CTAGTGAGTTGGTAGATCCTTATTTAAATGGTTGTGACACTTTCAAAATAGTCTTAAGTT 339 consensus_4263#1 ------------------------------------------------------------ consensus_4263#0 CTGCACATAAGAAGCTCAAACAAGAGGAGAAAATACCTATAATAGAGACTATTCTTGATG 399 consensus_4263#1 ------------------------------------------------------------ consensus_4263#0 CCCATAAGAGAATCGACGCTCAAGTTTCTTTATCATCACCAGATCATCAAATCAACATTC 459 consensus_4263#1 ------------------------------------------------------------ consensus_4263#0 TACTAGAATACACCCCTAAGAACCTTGGAAAGAATACAGTTAGCTCTGGGGGTCATTTGT 519 consensus_4263#1 ------------------------------------------------------------ consensus_4263#0 GTCGACTTTTATATGGACGGTTGATTGGAGGCAGTATAAGGAGAATTATGATGAACGACT 579 consensus_4263#1 ------------------------------------------------------------ consensus_4263#0 ATCGTCTATCAGAAAGAGCTCACTTAGGCAATACAACTATGAATGTGACATTAGCAGCAA 639 consensus_4263#1 ------------------------------------------------------------ consensus_4263#0 TAATGGCTAATGTGGGGCTTTGTCGAAATCGTCTTTCGTTTGGGATCCTTTTATTGGTAC 699 consensus_4263#1 ------------------------------------------------------------ consensus_4263#0 CGGAAGTACAGNTATAGCAGC 720 consensus_4263#1 --------------------- |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||