cluster # 4263

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Schistosoma mansoni
cluster # 4263 cluster # 4263 Sequences # 3 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_4263#0 length = 720 sequences # 2

consensus_4263#1 length = 255 sequences # 1

consensusID : consensus_4263#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 720
fasta sequence

                              [CTCGNAGACCAAAATTGGGCACGAGGTTTTCATTCGCTGCATCTGAATTTGTAAATTTTCGTTGGATTGAATTCAAGTCTTTGGCTGAAATGGAACAACTTAGTTATTCTGTTAGTGAATCCAAAGATGATTGGTTGAGACCATTTGTTGTGATCGAAATGGAAAATGATGATTCTGTTTTGTCAATTATTAAACGCAGCGTTTTAATCAAGTCTGCTTTTCATTTATGGTGTGATGCAGCAACCTTATCAGAATTAATTGAACAGGTTGCCAATCTTCCTAGTGAGTTGGTAGATCCTTATTTAAATGGTTGTGACACTTTCAAAATAGTCTTAAGTTCTGCACATAAGAAGCTCAAACAAGAGGAGAAAATACCTATAATAGAGACTATTCTTGATGCCCATAAGAGAATCGACGCTCAAGTTTCTTTATCATCACCAGATCATCAAATCAACATTCTACTAGAATACACCCCTAAGAACCTTGGAAAGAATACAGTTAGCTCTGGGGGTCATTTGTGTCGACTTTTATATGGACGGTTGATTGGAGGCAGTATAAGGAGAATTATGATGAACGACTATCGTCTATCAGAAAGAGCTCACTTAGGCAATACAACTATGAATGTGACATTAGCAGCAATAATGGCTAATGTGGGGCTTTGTCGAAATCGTCTTTCGTTTGGGATCCTTTTATTGGTACCGGAAGTACAGNTATAGCAGC]

[+] EMBL CD081221             [CTCGNAGACCAAAATTGGGCACGAGGTTTTCATTCGCTGCATCTGAATTTGTAAATTTTCGTTGGATTGAATTCAAGTCTTTGGCTGAAATGGAACAACTTAGTTATTCTGTTAGTGAATCCAAAGATGATTGGTTGAGACCATTTGTTGTGATCGAAATGGAAAATGATGATTCTGTTTTGTCAATTATTAAACGCAGCGTTTTAATCAAGTCTGCTTTTCATTTATGGTGTGATGCAGCAACCTTATCAGAATTAATTGAACAGGTTGCCAATCTTCCTAGTGAGTTGGTAGATCCTTATTTAAATGGTTGTGACACTTTCAAAATAGTCTTAAGTTCTGCACATAAGAAGCTCAAACAAGAGGAGAAAATACCTATAATAGAGACTATTCTTGATGCCCATAAGAGAATCGACGCTCAAGTTTCTTTATCATCACCAGATCATCAAATCAACATTCTACTAGAATACACCCCTAAGAACCTTGGAAAGAATACAGTTAGCTCTGGGGGTCATTTGTGTCGACTTTTATATGGACGGTTGATTGGAGGCAGTATAAGGAGAATTATGATGAACGACTATCGTCTATCAGAAAGAGCTCACTTAGGCAATACAACTATGAATGTGACATTAGCAGCAATAATGGCTAATGTGGGGCTTTGTCGAAATCGTCTTTCGTTTGGGATCCTTTTATTGGTACCGGAAGTACAGNTATAGCAGC]
[-] EMBL CD164836             [                                                                                                                                                                                   TTGTCAATTATTAAACGCAGCGTTTTAATCAAGTCTGCTTTTCATTTATGGTGTGATGCAGCAACCTTATCAGAATTAATTGAACAGGTTGCCAATCTTCCTAGTGAGTTGGTAGATCCTTATTTAAATGGTTGTGACACTTTCAAAATAGTCTTAAGTTCTGCACATAAGAAGCTCAAACAAGAGGAGAAAATACCTATAATAGAGACTATTCTTGATGCCCATAAGAGAATCGACGCTCAAGTTTCTTTATCATCACCAGATCATCAAATCAACATTCTACTTGAATACACCCCTAAGAACCTTGGAAAGAATACAGTTAGCTCTGGGGGTCATTTGTGTCGACTTTTATATGGACGGTTGATTGGAGGCAGTATAAGGAGAATTATGATGAACGACTATCGTCTATCAGAAAGAGCTCACTTAGGCAATACAACTATGAAT                                                                                                 ]




>consensus_4263#0
CTCGNAGACCAAAATTGGGCACGAGGTTTTCATTCGCTGCATCTGAATTTGTAAATTTTC
GTTGGATTGAATTCAAGTCTTTGGCTGAAATGGAACAACTTAGTTATTCTGTTAGTGAAT
CCAAAGATGATTGGTTGAGACCATTTGTTGTGATCGAAATGGAAAATGATGATTCTGTTT
TGTCAATTATTAAACGCAGCGTTTTAATCAAGTCTGCTTTTCATTTATGGTGTGATGCAG
CAACCTTATCAGAATTAATTGAACAGGTTGCCAATCTTCCTAGTGAGTTGGTAGATCCTT
ATTTAAATGGTTGTGACACTTTCAAAATAGTCTTAAGTTCTGCACATAAGAAGCTCAAAC
AAGAGGAGAAAATACCTATAATAGAGACTATTCTTGATGCCCATAAGAGAATCGACGCTC
AAGTTTCTTTATCATCACCAGATCATCAAATCAACATTCTACTAGAATACACCCCTAAGA
ACCTTGGAAAGAATACAGTTAGCTCTGGGGGTCATTTGTGTCGACTTTTATATGGACGGT
TGATTGGAGGCAGTATAAGGAGAATTATGATGAACGACTATCGTCTATCAGAAAGAGCTC
ACTTAGGCAATACAACTATGAATGTGACATTAGCAGCAATAATGGCTAATGTGGGGCTTT
GTCGAAATCGTCTTTCGTTTGGGATCCTTTTATTGGTACCGGAAGTACAGNTATAGCAGC

consensusID : consensus_4263#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 255
fasta sequence

                              [GTGTTAATTCAGTTTGTGGGAAATACATAATTACCAAGTACGCAAAATTCAGTACTGGACGCTGTTTATATGTTTCTCAATCAAAAGCTAAAATGAAAAAATATGTATTTTCATTCGCTGCATCTGAGTTTGTAAATTTTCGTTGGATTGAATTCAAGTCTTTGGCTGAAATGGAACAACTTAGTTATTCTGTTAGTGAATCCAAAGATGATTGGTTGAGACCATTTGTTGTGATCGAAATGGAAAATGATGATT]

[+] EMBL CD152563             [GTGTTAATTCAGTTTGTGGGAAATACATAATTACCAAGTACGCAAAATTCAGTACTGGACGCTGTTTATATGTTTCTCAATCAAAAGCTAAAATGAAAAAATATGTATTTTCATTCGCTGCATCTGAGTTTGTAAATTTTCGTTGGATTGAATTCAAGTCTTTGGCTGAAATGGAACAACTTAGTTATTCTGTTAGTGAATCCAAAGATGATTGGTTGAGACCATTTGTTGTGATCGAAATGGAAAATGATGATT]




>consensus_4263#1
GTGTTAATTCAGTTTGTGGGAAATACATAATTACCAAGTACGCAAAATTCAGTACTGGAC
GCTGTTTATATGTTTCTCAATCAAAAGCTAAAATGAAAAAATATGTATTTTCATTCGCTG
CATCTGAGTTTGTAAATTTTCGTTGGATTGAATTCAAGTCTTTGGCTGAAATGGAACAAC
TTAGTTATTCTGTTAGTGAATCCAAAGATGATTGGTTGAGACCATTTGTTGTGATCGAAA
TGGAAAATGATGATT

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_4263#0      ------------------------------------------------------------
consensus_4263#1      GTGTTAATTCAGTTTGTGGGAAATACATAATTACCAAGTACGCAAAATTCAGTACTGGAC 60
                                                                                  

consensus_4263#0      -------------------CTCGNAGACCAAAATTGGGCACGAGGT--TTTCATTCGCTG 39
consensus_4263#1      GCTGTTTATATGTTTCTCAATCAAAAGCTAAAATGAAAAAATATGTATTTTCATTCGCTG 120
                                          **  *  * *****     *  * **  ************

consensus_4263#0      CATCTGAATTTGTAAATTTTCGTTGGATTGAATTCAAGTCTTTGGCTGAAATGGAACAAC 99
consensus_4263#1      CATCTGAGTTTGTAAATTTTCGTTGGATTGAATTCAAGTCTTTGGCTGAAATGGAACAAC 180
                      ******* ****************************************************

consensus_4263#0      TTAGTTATTCTGTTAGTGAATCCAAAGATGATTGGTTGAGACCATTTGTTGTGATCGAAA 159
consensus_4263#1      TTAGTTATTCTGTTAGTGAATCCAAAGATGATTGGTTGAGACCATTTGTTGTGATCGAAA 240
                      ************************************************************

consensus_4263#0      TGGAAAATGATGATTCTGTTTTGTCAATTATTAAACGCAGCGTTTTAATCAAGTCTGCTT 219
consensus_4263#1      TGGAAAATGATGATT--------------------------------------------- 255
                      ***************                                             

consensus_4263#0      TTCATTTATGGTGTGATGCAGCAACCTTATCAGAATTAATTGAACAGGTTGCCAATCTTC 279
consensus_4263#1      ------------------------------------------------------------
                                                                                  

consensus_4263#0      CTAGTGAGTTGGTAGATCCTTATTTAAATGGTTGTGACACTTTCAAAATAGTCTTAAGTT 339
consensus_4263#1      ------------------------------------------------------------
                                                                                  

consensus_4263#0      CTGCACATAAGAAGCTCAAACAAGAGGAGAAAATACCTATAATAGAGACTATTCTTGATG 399
consensus_4263#1      ------------------------------------------------------------
                                                                                  

consensus_4263#0      CCCATAAGAGAATCGACGCTCAAGTTTCTTTATCATCACCAGATCATCAAATCAACATTC 459
consensus_4263#1      ------------------------------------------------------------
                                                                                  

consensus_4263#0      TACTAGAATACACCCCTAAGAACCTTGGAAAGAATACAGTTAGCTCTGGGGGTCATTTGT 519
consensus_4263#1      ------------------------------------------------------------
                                                                                  

consensus_4263#0      GTCGACTTTTATATGGACGGTTGATTGGAGGCAGTATAAGGAGAATTATGATGAACGACT 579
consensus_4263#1      ------------------------------------------------------------
                                                                                  

consensus_4263#0      ATCGTCTATCAGAAAGAGCTCACTTAGGCAATACAACTATGAATGTGACATTAGCAGCAA 639
consensus_4263#1      ------------------------------------------------------------
                                                                                  

consensus_4263#0      TAATGGCTAATGTGGGGCTTTGTCGAAATCGTCTTTCGTTTGGGATCCTTTTATTGGTAC 699
consensus_4263#1      ------------------------------------------------------------
                                                                                  

consensus_4263#0      CGGAAGTACAGNTATAGCAGC 720
consensus_4263#1      ---------------------