cluster # 4266

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Schistosoma mansoni
cluster # 4266 cluster # 4266 Sequences # 3 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_4266#0 length = 1078 sequences # 2

consensus_4266#1 length = 307 sequences # 1

consensusID : consensus_4266#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 1078
fasta sequence

                              [ATGTTCCTCTTTACTGATAGCCAAGGCAAGTTGAAGATGTAATTGTTCTTCTCCAGCAGACTGAGGTCTAACGGATTCTAGTTCAGTTGCGGCATGAGAAACAGATTCTAAAAATTAAGATATATTATCCAAACATAGCAAAATATTCAATACCAAAAATAACAGTTATCTAATGCCAGCATCACGACTTTGTGCATAGACAGTATCAGTATACGGGATCAAGTGATAAGAATTGCTTATAAATGTACCTGAGACATTCAGTCAGTCAGTCAGCTACAACGTAGGACAAGGCACATATATGCATCGGTCCAAGTTGCCATACCTCGTTAGCACAACAAGATGAACACCGGATTCATAGAAGTAGTTAATTTAGTGGTGGTAATATATAAAAGAAAGGTTGTATATAAGGATATAGTATAGGAAGGAAGACAGATATGAAGCAATTTTAATCTCAAGGTTTAAGGGAAGATAAAGAGTGTATACACCTACGCCATTGTGATTGATTCTGAGCCATGTCACCCAGAGTCTCCAACCATTGGTTACGATAATCACGCGTACCCCAACTAAGTAGTCTCCATCTGTCAACATGACTCAGACTAGAAGTTAGTGACTTCAAGCACTGATGCCACGTTTTGGTTTGGCCGCCCCTAACTCTCTTTCAACCATCCCCTACACTGGTCAACATTGCGCGTCGCAGTAATCGGTGTTCAGGCATACGTAACACGTGGTCCAGCCATCTCAATGGATGAAGATTCATGACCTCATCAACTGATTTACCATCATTCCCTAACACCCTGTGTCTAACCTCACTATTACTTACTCGGTGATCCCAGCAGATGTGAGCAATATTTTTAAGGCATCTACTCAACACAACAGAAAAGCGGAAGTATGAGAAGGGGTTGTAGTGATTGTAGAATTTCCATAGTTTATATCGGGAAATCATATCAGCTAACCCTCCGCTGGNAAATTGATAGCACTGGACAGTTTTTGTAGTATGGAAGTCCTAATCAGTACTTCACGCTTATCGGGATCCAAAGCTGGGGCCTACGATCTCGCTCTCGAATGCTTAAATCCTAGA]

[+] EMBL CD184478             [ATGTTCCTCTTTACTGATAGCCAAGGCAAGTTGAAGATGTAATTGTTCTTCTCCAGCAGACTGAGGTCTAACGGATTCTAGTTCAGTTGCGGCATGAGAAACAGATTCTAAAAATTAAGATATATTATCCAAACATAGCAAAATATTCAATACCAAAAATAACAGTTATCTAATGCCAGCATCACGACTTTGTGCATAGACAGTATCAGTATACGGGATCAAGTGATAAGAATTGCTTATAAATGTACCTGAGACATTCAGTCAGTCAGTCAGCTACAACGTAGGACAAGGCACATATATGCATCGGTCCAAGTTGCCATACCTCGTTAGCACAACAAGATGAACACCGGATTCATAGAAGTAGTTAATTTAGTGGTGGTAATATATAAAAGAAAGGTTGTATATAAGGATATAGTATAGGAAGGAAGACAGATATGAAGCAATTTTAATCTCAAGGTTTAAGGGAAGATAAAGAGTGTATACACCTACGC                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                           ]
[+] EMBL CD127181             [                                                                                                                                                                                                                                                                                                                                                                                                                       GGATATAGTATAGGAAGAAAGAGAGATATGAAGCAATTTTAATCTCAAGGTTTAAGGGAAGATAAAGAGTGTCTACACCTACACCATTGTGATTGATTCTGAGCCATGTCACCCAGAGTCTCCAACCATTGGTTACGATAATCACGCGTACCCCAACTAAGTAGTCTCCATCTGTCAACATGACTCAGACTAGAAGTTAGTGACTTCAAGCACTGATGCCACGTTTTGGTTTGGCCGCCCCTAACTCTCTTTCAACCATCCCCTACACTGGTCAACATTGCGCGTCGCAGTAATCGGTGTTCAGGCATACGTAACACGTGGTCCAGCCATCTCAATGGATGAAGATTCATGACCTCATCAACTGATTTACCATCATTCCCTAACACCCTGTGTCTAACCTCACTATTACTTACTCGGTGATCCCAGCAGATGTGAGCAATATTTTTAAGGCATCTACTCAACACAACAGAAAAGCGGAAGTATGAGAAGGGGTTGTAGTGATTGTAGAATTTCCATAGTTTATATCGGGAAATCATATCAGCTAACCCTCCGCTGGNAAATTGATAGCACTGGACAGTTTTTGTAGTATGGAAGTCCTAATCAGTACTTCACGCTTATCGGGATCCAAAGCTGGGGCCTACGATCTCGCTCTCGAATGCTTAAATCCTAGA]




>consensus_4266#0
ATGTTCCTCTTTACTGATAGCCAAGGCAAGTTGAAGATGTAATTGTTCTTCTCCAGCAGA
CTGAGGTCTAACGGATTCTAGTTCAGTTGCGGCATGAGAAACAGATTCTAAAAATTAAGA
TATATTATCCAAACATAGCAAAATATTCAATACCAAAAATAACAGTTATCTAATGCCAGC
ATCACGACTTTGTGCATAGACAGTATCAGTATACGGGATCAAGTGATAAGAATTGCTTAT
AAATGTACCTGAGACATTCAGTCAGTCAGTCAGCTACAACGTAGGACAAGGCACATATAT
GCATCGGTCCAAGTTGCCATACCTCGTTAGCACAACAAGATGAACACCGGATTCATAGAA
GTAGTTAATTTAGTGGTGGTAATATATAAAAGAAAGGTTGTATATAAGGATATAGTATAG
GAAGGAAGACAGATATGAAGCAATTTTAATCTCAAGGTTTAAGGGAAGATAAAGAGTGTA
TACACCTACGCCATTGTGATTGATTCTGAGCCATGTCACCCAGAGTCTCCAACCATTGGT
TACGATAATCACGCGTACCCCAACTAAGTAGTCTCCATCTGTCAACATGACTCAGACTAG
AAGTTAGTGACTTCAAGCACTGATGCCACGTTTTGGTTTGGCCGCCCCTAACTCTCTTTC
AACCATCCCCTACACTGGTCAACATTGCGCGTCGCAGTAATCGGTGTTCAGGCATACGTA
ACACGTGGTCCAGCCATCTCAATGGATGAAGATTCATGACCTCATCAACTGATTTACCAT
CATTCCCTAACACCCTGTGTCTAACCTCACTATTACTTACTCGGTGATCCCAGCAGATGT
GAGCAATATTTTTAAGGCATCTACTCAACACAACAGAAAAGCGGAAGTATGAGAAGGGGT
TGTAGTGATTGTAGAATTTCCATAGTTTATATCGGGAAATCATATCAGCTAACCCTCCGC
TGGNAAATTGATAGCACTGGACAGTTTTTGTAGTATGGAAGTCCTAATCAGTACTTCACG
CTTATCGGGATCCAAAGCTGGGGCCTACGATCTCGCTCTCGAATGCTTAAATCCTAGA

consensusID : consensus_4266#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 307
fasta sequence

                              [GTCACACAGAGTCTCCAGCCATTGGTTACGATAGTCACGCGGACCCCAACCAAGTAGTCTGCATCTGCTAACATGGCTCAGACTAGAAGTTAGTGACTTCAAACACTGGTGCCATGTTTCGGTTTGGCCGCCCCTAACTCTCTTCCAACCATCCCCAACACTAGTCAACATTGCGCGTCGTAGTAATCGGTGTTTAGGCATACGTAACACGTGGGCCAACCATCTCAGTCGATGAAGATTCGTGACCTCATCAACTGATTTAGCATCGTTCCCTAATACCCTGCGTCTAACCTCACTATTACTTACC]

[+] EMBL BG930962             [GTCACACAGAGTCTCCAGCCATTGGTTACGATAGTCACGCGGACCCCAACCAAGTAGTCTGCATCTGCTAACATGGCTCAGACTAGAAGTTAGTGACTTCAAACACTGGTGCCATGTTTCGGTTTGGCCGCCCCTAACTCTCTTCCAACCATCCCCAACACTAGTCAACATTGCGCGTCGTAGTAATCGGTGTTTAGGCATACGTAACACGTGGGCCAACCATCTCAGTCGATGAAGATTCGTGACCTCATCAACTGATTTAGCATCGTTCCCTAATACCCTGCGTCTAACCTCACTATTACTTACC]




>consensus_4266#1
GTCACACAGAGTCTCCAGCCATTGGTTACGATAGTCACGCGGACCCCAACCAAGTAGTCT
GCATCTGCTAACATGGCTCAGACTAGAAGTTAGTGACTTCAAACACTGGTGCCATGTTTC
GGTTTGGCCGCCCCTAACTCTCTTCCAACCATCCCCAACACTAGTCAACATTGCGCGTCG
TAGTAATCGGTGTTTAGGCATACGTAACACGTGGGCCAACCATCTCAGTCGATGAAGATT
CGTGACCTCATCAACTGATTTAGCATCGTTCCCTAATACCCTGCGTCTAACCTCACTATT
ACTTACC

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_4266#0      ATGTTCCTCTTTACTGATAGCCAAGGCAAGTTGAAGATGTAATTGTTCTTCTCCAGCAGA 60
consensus_4266#1      ------------------------------------------------------------
                                                                                  

consensus_4266#0      CTGAGGTCTAACGGATTCTAGTTCAGTTGCGGCATGAGAAACAGATTCTAAAAATTAAGA 120
consensus_4266#1      ------------------------------------------------------------
                                                                                  

consensus_4266#0      TATATTATCCAAACATAGCAAAATATTCAATACCAAAAATAACAGTTATCTAATGCCAGC 180
consensus_4266#1      ------------------------------------------------------------
                                                                                  

consensus_4266#0      ATCACGACTTTGTGCATAGACAGTATCAGTATACGGGATCAAGTGATAAGAATTGCTTAT 240
consensus_4266#1      ------------------------------------------------------------
                                                                                  

consensus_4266#0      AAATGTACCTGAGACATTCAGTCAGTCAGTCAGCTACAACGTAGGACAAGGCACATATAT 300
consensus_4266#1      ------------------------------------------------------------
                                                                                  

consensus_4266#0      GCATCGGTCCAAGTTGCCATACCTCGTTAGCACAACAAGATGAACACCGGATTCATAGAA 360
consensus_4266#1      ------------------------------------------------------------
                                                                                  

consensus_4266#0      GTAGTTAATTTAGTGGTGGTAATATATAAAAGAAAGGTTGTATATAAGGATATAGTATAG 420
consensus_4266#1      ------------------------------------------------------------
                                                                                  

consensus_4266#0      GAAGGAAGACAGATATGAAGCAATTTTAATCTCAAGGTTTAAGGGAAGATAAAGAGTGTA 480
consensus_4266#1      ------------------------------------------------------------
                                                                                  

consensus_4266#0      TACACCTACGCCATTGTGATTGATTCTGAGCCATGTCACCCAGAGTCTCCAACCATTGGT 540
consensus_4266#1      ----------------------------------GTCACACAGAGTCTCCAGCCATTGGT 26
                                                        ***** *********** ********

consensus_4266#0      TACGATAATCACGCGTACCCCAACTAAGTAGTCTCCATCTGTCAACATGACTCAGACTAG 600
consensus_4266#1      TACGATAGTCACGCGGACCCCAACCAAGTAGTCTGCATCTGCTAACATGGCTCAGACTAG 86
                      ******* ******* ******** ********* ******  ****** **********

consensus_4266#0      AAGTTAGTGACTTCAAGCACTGATGCCACGTTTTGGTTTGGCCGCCCCTAACTCTCTTTC 660
consensus_4266#1      AAGTTAGTGACTTCAAACACTGGTGCCATGTTTCGGTTTGGCCGCCCCTAACTCTCTTCC 146
                      **************** ***** ***** **** ************************ *

consensus_4266#0      AACCATCCCCTACACTGGTCAACATTGCGCGTCGCAGTAATCGGTGTTCAGGCATACGTA 720
consensus_4266#1      AACCATCCCCAACACTAGTCAACATTGCGCGTCGTAGTAATCGGTGTTTAGGCATACGTA 206
                      ********** ***** ***************** ************* ***********

consensus_4266#0      ACACGTGGTCCAGCCATCTCAATGGATGAAGATTCATGACCTCATCAACTGATTTACCAT 780
consensus_4266#1      ACACGTGGGCCAACCATCTCAGTCGATGAAGATTCGTGACCTCATCAACTGATTTAGCAT 266
                      ******** *** ******** * *********** ******************** ***

consensus_4266#0      CATTCCCTAACACCCTGTGTCTAACCTCACTATTACTTACTCGGTGATCCCAGCAGATGT 840
consensus_4266#1      CGTTCCCTAATACCCTGCGTCTAACCTCACTATTACTTACC------------------- 307
                      * ******** ****** **********************                    

consensus_4266#0      GAGCAATATTTTTAAGGCATCTACTCAACACAACAGAAAAGCGGAAGTATGAGAAGGGGT 900
consensus_4266#1      ------------------------------------------------------------
                                                                                  

consensus_4266#0      TGTAGTGATTGTAGAATTTCCATAGTTTATATCGGGAAATCATATCAGCTAACCCTCCGC 960
consensus_4266#1      ------------------------------------------------------------
                                                                                  

consensus_4266#0      TGGNAAATTGATAGCACTGGACAGTTTTTGTAGTATGGAAGTCCTAATCAGTACTTCACG 1020
consensus_4266#1      ------------------------------------------------------------
                                                                                  

consensus_4266#0      CTTATCGGGATCCAAAGCTGGGGCCTACGATCTCGCTCTCGAATGCTTAAATCCTAGA 1078
consensus_4266#1      ----------------------------------------------------------