These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_4266#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 1078 fasta sequence [ATGTTCCTCTTTACTGATAGCCAAGGCAAGTTGAAGATGTAATTGTTCTTCTCCAGCAGACTGAGGTCTAACGGATTCTAGTTCAGTTGCGGCATGAGAAACAGATTCTAAAAATTAAGATATATTATCCAAACATAGCAAAATATTCAATACCAAAAATAACAGTTATCTAATGCCAGCATCACGACTTTGTGCATAGACAGTATCAGTATACGGGATCAAGTGATAAGAATTGCTTATAAATGTACCTGAGACATTCAGTCAGTCAGTCAGCTACAACGTAGGACAAGGCACATATATGCATCGGTCCAAGTTGCCATACCTCGTTAGCACAACAAGATGAACACCGGATTCATAGAAGTAGTTAATTTAGTGGTGGTAATATATAAAAGAAAGGTTGTATATAAGGATATAGTATAGGAAGGAAGACAGATATGAAGCAATTTTAATCTCAAGGTTTAAGGGAAGATAAAGAGTGTATACACCTACGCCATTGTGATTGATTCTGAGCCATGTCACCCAGAGTCTCCAACCATTGGTTACGATAATCACGCGTACCCCAACTAAGTAGTCTCCATCTGTCAACATGACTCAGACTAGAAGTTAGTGACTTCAAGCACTGATGCCACGTTTTGGTTTGGCCGCCCCTAACTCTCTTTCAACCATCCCCTACACTGGTCAACATTGCGCGTCGCAGTAATCGGTGTTCAGGCATACGTAACACGTGGTCCAGCCATCTCAATGGATGAAGATTCATGACCTCATCAACTGATTTACCATCATTCCCTAACACCCTGTGTCTAACCTCACTATTACTTACTCGGTGATCCCAGCAGATGTGAGCAATATTTTTAAGGCATCTACTCAACACAACAGAAAAGCGGAAGTATGAGAAGGGGTTGTAGTGATTGTAGAATTTCCATAGTTTATATCGGGAAATCATATCAGCTAACCCTCCGCTGGNAAATTGATAGCACTGGACAGTTTTTGTAGTATGGAAGTCCTAATCAGTACTTCACGCTTATCGGGATCCAAAGCTGGGGCCTACGATCTCGCTCTCGAATGCTTAAATCCTAGA] [+] EMBL CD184478 [ATGTTCCTCTTTACTGATAGCCAAGGCAAGTTGAAGATGTAATTGTTCTTCTCCAGCAGACTGAGGTCTAACGGATTCTAGTTCAGTTGCGGCATGAGAAACAGATTCTAAAAATTAAGATATATTATCCAAACATAGCAAAATATTCAATACCAAAAATAACAGTTATCTAATGCCAGCATCACGACTTTGTGCATAGACAGTATCAGTATACGGGATCAAGTGATAAGAATTGCTTATAAATGTACCTGAGACATTCAGTCAGTCAGTCAGCTACAACGTAGGACAAGGCACATATATGCATCGGTCCAAGTTGCCATACCTCGTTAGCACAACAAGATGAACACCGGATTCATAGAAGTAGTTAATTTAGTGGTGGTAATATATAAAAGAAAGGTTGTATATAAGGATATAGTATAGGAAGGAAGACAGATATGAAGCAATTTTAATCTCAAGGTTTAAGGGAAGATAAAGAGTGTATACACCTACGC ] [+] EMBL CD127181 [ GGATATAGTATAGGAAGAAAGAGAGATATGAAGCAATTTTAATCTCAAGGTTTAAGGGAAGATAAAGAGTGTCTACACCTACACCATTGTGATTGATTCTGAGCCATGTCACCCAGAGTCTCCAACCATTGGTTACGATAATCACGCGTACCCCAACTAAGTAGTCTCCATCTGTCAACATGACTCAGACTAGAAGTTAGTGACTTCAAGCACTGATGCCACGTTTTGGTTTGGCCGCCCCTAACTCTCTTTCAACCATCCCCTACACTGGTCAACATTGCGCGTCGCAGTAATCGGTGTTCAGGCATACGTAACACGTGGTCCAGCCATCTCAATGGATGAAGATTCATGACCTCATCAACTGATTTACCATCATTCCCTAACACCCTGTGTCTAACCTCACTATTACTTACTCGGTGATCCCAGCAGATGTGAGCAATATTTTTAAGGCATCTACTCAACACAACAGAAAAGCGGAAGTATGAGAAGGGGTTGTAGTGATTGTAGAATTTCCATAGTTTATATCGGGAAATCATATCAGCTAACCCTCCGCTGGNAAATTGATAGCACTGGACAGTTTTTGTAGTATGGAAGTCCTAATCAGTACTTCACGCTTATCGGGATCCAAAGCTGGGGCCTACGATCTCGCTCTCGAATGCTTAAATCCTAGA] consensusID : consensus_4266#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 307 fasta sequence [GTCACACAGAGTCTCCAGCCATTGGTTACGATAGTCACGCGGACCCCAACCAAGTAGTCTGCATCTGCTAACATGGCTCAGACTAGAAGTTAGTGACTTCAAACACTGGTGCCATGTTTCGGTTTGGCCGCCCCTAACTCTCTTCCAACCATCCCCAACACTAGTCAACATTGCGCGTCGTAGTAATCGGTGTTTAGGCATACGTAACACGTGGGCCAACCATCTCAGTCGATGAAGATTCGTGACCTCATCAACTGATTTAGCATCGTTCCCTAATACCCTGCGTCTAACCTCACTATTACTTACC] [+] EMBL BG930962 [GTCACACAGAGTCTCCAGCCATTGGTTACGATAGTCACGCGGACCCCAACCAAGTAGTCTGCATCTGCTAACATGGCTCAGACTAGAAGTTAGTGACTTCAAACACTGGTGCCATGTTTCGGTTTGGCCGCCCCTAACTCTCTTCCAACCATCCCCAACACTAGTCAACATTGCGCGTCGTAGTAATCGGTGTTTAGGCATACGTAACACGTGGGCCAACCATCTCAGTCGATGAAGATTCGTGACCTCATCAACTGATTTAGCATCGTTCCCTAATACCCTGCGTCTAACCTCACTATTACTTACC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_4266#0 ATGTTCCTCTTTACTGATAGCCAAGGCAAGTTGAAGATGTAATTGTTCTTCTCCAGCAGA 60 consensus_4266#1 ------------------------------------------------------------ consensus_4266#0 CTGAGGTCTAACGGATTCTAGTTCAGTTGCGGCATGAGAAACAGATTCTAAAAATTAAGA 120 consensus_4266#1 ------------------------------------------------------------ consensus_4266#0 TATATTATCCAAACATAGCAAAATATTCAATACCAAAAATAACAGTTATCTAATGCCAGC 180 consensus_4266#1 ------------------------------------------------------------ consensus_4266#0 ATCACGACTTTGTGCATAGACAGTATCAGTATACGGGATCAAGTGATAAGAATTGCTTAT 240 consensus_4266#1 ------------------------------------------------------------ consensus_4266#0 AAATGTACCTGAGACATTCAGTCAGTCAGTCAGCTACAACGTAGGACAAGGCACATATAT 300 consensus_4266#1 ------------------------------------------------------------ consensus_4266#0 GCATCGGTCCAAGTTGCCATACCTCGTTAGCACAACAAGATGAACACCGGATTCATAGAA 360 consensus_4266#1 ------------------------------------------------------------ consensus_4266#0 GTAGTTAATTTAGTGGTGGTAATATATAAAAGAAAGGTTGTATATAAGGATATAGTATAG 420 consensus_4266#1 ------------------------------------------------------------ consensus_4266#0 GAAGGAAGACAGATATGAAGCAATTTTAATCTCAAGGTTTAAGGGAAGATAAAGAGTGTA 480 consensus_4266#1 ------------------------------------------------------------ consensus_4266#0 TACACCTACGCCATTGTGATTGATTCTGAGCCATGTCACCCAGAGTCTCCAACCATTGGT 540 consensus_4266#1 ----------------------------------GTCACACAGAGTCTCCAGCCATTGGT 26 ***** *********** ******** consensus_4266#0 TACGATAATCACGCGTACCCCAACTAAGTAGTCTCCATCTGTCAACATGACTCAGACTAG 600 consensus_4266#1 TACGATAGTCACGCGGACCCCAACCAAGTAGTCTGCATCTGCTAACATGGCTCAGACTAG 86 ******* ******* ******** ********* ****** ****** ********** consensus_4266#0 AAGTTAGTGACTTCAAGCACTGATGCCACGTTTTGGTTTGGCCGCCCCTAACTCTCTTTC 660 consensus_4266#1 AAGTTAGTGACTTCAAACACTGGTGCCATGTTTCGGTTTGGCCGCCCCTAACTCTCTTCC 146 **************** ***** ***** **** ************************ * consensus_4266#0 AACCATCCCCTACACTGGTCAACATTGCGCGTCGCAGTAATCGGTGTTCAGGCATACGTA 720 consensus_4266#1 AACCATCCCCAACACTAGTCAACATTGCGCGTCGTAGTAATCGGTGTTTAGGCATACGTA 206 ********** ***** ***************** ************* *********** consensus_4266#0 ACACGTGGTCCAGCCATCTCAATGGATGAAGATTCATGACCTCATCAACTGATTTACCAT 780 consensus_4266#1 ACACGTGGGCCAACCATCTCAGTCGATGAAGATTCGTGACCTCATCAACTGATTTAGCAT 266 ******** *** ******** * *********** ******************** *** consensus_4266#0 CATTCCCTAACACCCTGTGTCTAACCTCACTATTACTTACTCGGTGATCCCAGCAGATGT 840 consensus_4266#1 CGTTCCCTAATACCCTGCGTCTAACCTCACTATTACTTACC------------------- 307 * ******** ****** ********************** consensus_4266#0 GAGCAATATTTTTAAGGCATCTACTCAACACAACAGAAAAGCGGAAGTATGAGAAGGGGT 900 consensus_4266#1 ------------------------------------------------------------ consensus_4266#0 TGTAGTGATTGTAGAATTTCCATAGTTTATATCGGGAAATCATATCAGCTAACCCTCCGC 960 consensus_4266#1 ------------------------------------------------------------ consensus_4266#0 TGGNAAATTGATAGCACTGGACAGTTTTTGTAGTATGGAAGTCCTAATCAGTACTTCACG 1020 consensus_4266#1 ------------------------------------------------------------ consensus_4266#0 CTTATCGGGATCCAAAGCTGGGGCCTACGATCTCGCTCTCGAATGCTTAAATCCTAGA 1078 consensus_4266#1 ---------------------------------------------------------- |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||