These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_4267#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 631 fasta sequence [TGTTGGCTGAGTGATTTGTTCTAACGTACAGAAAAGAGACAGTGAAAAACAGTGTGAATACGAAGGAATGCAACATAGAGTATATGTGAGGTTGTGAACTTGATTTTGGATTGATGGTATTGGATCAGGAAGCGAGAGGGAGAGAGAGATTGAGTAGTTTGTGGTTCATCAGCGATTGGCAATGTGGACATATGATGTGGTCTAGTGAAGCGATCCTATCGGTCATGCGTCACGATGATACCGGTGTGTGTTGTGTGGTGTTGGCTGAGTGATTTGTTCTAACGTACAGAAAAGAGACAGTGAAAAACAGTGTGAATACGAAGGAATGCAACATAGAGTATATGTGAGATTGTGAACTTGATTTTGGATTGGCATATCGAGATTGTCTGTTGATTGTGCCAGGTGTCGTGGTGGTCGATGTAGTTGACTTGAGTTTTCTACTTATGAGTAATTGTGAGGTGATAGTGTGTGGATTGATGGTATTGGATCANGAAGCGAGAGGGAGAGAGAGATTGNAGTAGTTGTGGTTCATCAGCGATTGGGCATGTGGACATATGATGTGGTCTAGTGAAGCGATCCTATCGGTCATGCGTCACGATGATACCGGTGTGTGTNGNGTGGTGTTGCTGAG] [+] EMBL CD191676 [TGTTGGCTGAGTGATTTGTTCTAACGTACAGAAAAGAGACAGTGAAAAACAGTGTGAATACGAAGGAATGCAACATAGAGTATATGTGAGGTTGTGAACTTGATTTTGGATTGATGGTATTGGATCAGGAAGCGAGAGGGAGAGAGAGATTGAGTAGTTTGTGGTTCATCAGCGATTGGCAATGTGGACATATGATGTGGTCTAGTGAAGCGATCCTATCGGTCATGCGTCACGATGATACCGGTGTGTGTTGTGTGGTGTTGGCTGAGTGATTTGTTCTAACGTACAGAAAAGAGACAGTGAAAAACAGTGTGAATACGAAGGAATGCAACATAGAGTATATGTGAGATTGTGAACTTGATTTTGGATTGGCATATCGAGATTGTCTGTTGATTGTGCCAGGTGTCGTGGTGGTCGATGTAGTTGACTTGAGTTTTCTACTTATGAGTAATTGTGAGGTGATAGTGTGTGGATTGATGGTATTGGATCANGAAGCGAGAGGGAGAGAGAGATTGNAGTAGTTGTGGTTCATCAGCGATTGGGCATGTGGACATATGATGTGGTCTAGTGAAGCGATCCTATCGGTCATGCGTCACGATGATACCGGTGTGTGTNGNGTGGTGTTGCTGAG] [+] EMBL CD191753 [TGTTGGCTGAGTGATTTGTTCTAACGTACAGAAAAGAGACAGTGAAAAACAGTGTGAATACGAAGGAATGCAACATAGAGTATATGTGAGGTTGTGAACTTGATTTTGGATTGATGGTATTGGATCAGGAAGCGAGAGGGAGAGAGAGATTGAGTAGTTTGTGGTTCATCAGCGATTGGCAATGTGGACATATGATGTGGTCTAGTGAAGCGATCCTATCGGTCATGCGTCACGATGATACCGGTGTGTGTTGTGTGGTGTTGGCTGAGTGATTTGTTCTAACGTACAGAAAAGAGACAGTGAAAAACAGTGTGAATACGAAGGAATGCAACATAGAGTATATGTGAGATTGTGAACTTGATTTTGGATTGGCATATCGAGATTGTCTGTTGATTGTGCCAGGTGTCGTGGTGGTCGATGTAGTTGACTTGAGTTTTCTACTTATGAGTAATTGTGAGGTGATAGTGTGTGGATTGATGGTATTGGATCANGAAGCGAGAGGGAGAGAG ] consensusID : consensus_4267#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 471 fasta sequence [GCGATTGGCAATGTGGACATATGATGTGGTCTAGTGAAGCGATCCTATCGGTCATGCGTCACGATGATACCGGTGTGTGTTGTGTGGTGTTGGCTGAGTGATTTGTTCTAACGTACAGAAAAGAGACAGTGAAAAACAGTGTGAATACGAAGGAATGCTACTTATGAGTAATTGCGAGGTGATAGTGTGTGGATTGATGGTCTTGGATCAGGAAGCGAGAGGGAGAGAGAGATTGAGTAGTTTGTGGTTCATCAGCGATTGGCAATGTGGACATATGATGTGGTCTAGTGAAGCGATCCTATCGGTCATGCGTTACGATGATACCGGTGTGTGTTGAGTGGTGTAGGCTGAGTGATTGGTTCTTATCGTCAGAAAAGAGACAGTTGACTACAGTGTGACTACGAAGGACTGCCCGGTATAGTCTATGTGACGTTGCGAACTTGATTTTGGATTGACATATCTAGATTGTCT] [+] EMBL CD133474 [GCGATTGGCAATGTGGACATATGATGTGGTCTAGTGAAGCGATCCTATCGGTCATGCGTCACGATGATACCGGTGTGTGTTGTGTGGTGTTGGCTGAGTGATTTGTTCTAACGTACAGAAAAGAGACAGTGAAAAACAGTGTGAATACGAAGGAATGCTACTTATGAGTAATTGCGAGGTGATAGTGTGTGGATTGATGGTCTTGGATCAGGAAGCGAGAGGGAGAGAGAGATTGAGTAGTTTGTGGTTCATCAGCGATTGGCAATGTGGACATATGATGTGGTCTAGTGAAGCGATCCTATCGGTCATGCGTTACGATGATACCGGTGTGTGTTGAGTGGTGTAGGCTGAGTGATTGGTTCTTATCGTCAGAAAAGAGACAGTTGACTACAGTGTGACTACGAAGGACTGCCCGGTATAGTCTATGTGACGTTGCGAACTTGATTTTGGATTGACATATCTAGATTGTCT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_4267#0 ------------------------------------------------------------ consensus_4267#1 GCGATTGGCAATGTGGACATATGATGTGGTCTAGTGAAGCGATCCTATCGGTCATGCGTC 60 consensus_4267#0 ---------------------------TGTTGGCTGAGTGATTTGTTCTAACGTACAGAA 33 consensus_4267#1 ACGATGATACCGGTGTGTGTTGTGTGGTGTTGGCTGAGTGATTTGTTCTAACGTACAGAA 120 ********************************* consensus_4267#0 AAGAGACAGTGAAAAACAGTGTGAATACGAAGGAATGCAACATA-GAGTATATGTGAGGT 92 consensus_4267#1 AAGAGACAGTGAAAAACAGTGTGAATACGAAGGAATGCTACTTATGAGTAATTGCGAGGT 180 ************************************** ** ** ***** ** ***** consensus_4267#0 TGTGAACTTGATTTTGGATTGATGGTATTGGATCAGGAAGCGAGAGGGAGAGAGAGATTG 152 consensus_4267#1 GATA-----GTGTGTGGATTGATGGTCTTGGATCAGGAAGCGAGAGGGAGAGAGAGATTG 235 * * * ************ ********************************* consensus_4267#0 AGTAGTTTGTGGTTCATCAGCGATTGGCAATGTGGACATATGATGTGGTCTAGTGAAGCG 212 consensus_4267#1 AGTAGTTTGTGGTTCATCAGCGATTGGCAATGTGGACATATGATGTGGTCTAGTGAAGCG 295 ************************************************************ consensus_4267#0 ATCCTATCGGTCATGCGTCACGATGATACCGGTGTGTGTTGTGTGGTGTTGGCTGAGTGA 272 consensus_4267#1 ATCCTATCGGTCATGCGTTACGATGATACCGGTGTGTGTTGAGTGGTGTAGGCTGAGTGA 355 ****************** ********************** ******* ********** consensus_4267#0 TTTGTTCTAACGTACAGAAAAGAGACAGTGAAAAACAGTGTGAATACGAAGGAATGCAAC 332 consensus_4267#1 TTGGTTCTTATCGTCAGAAAAGAGACAGTTGACTACAGTGTGACTACGAAGGACTGCCCG 415 ** ***** * *************** * ********* ********* *** consensus_4267#0 ATAGAGTATATGTGAGATTGTGAACTTGATTTTGGATTGGCATATCGAGATTGTCTGTTG 392 consensus_4267#1 GTATAGTCTATGTGACGTTGCGAACTTGATTTTGGATTGACATATCTAGATTGTCT---- 471 ** *** ******* *** ****************** ****** ********* consensus_4267#0 ATTGTGCCAGGTGTCGTGGTGGTCGATGTAGTTGACTTGAGTTTTCTACTTATGAGTAAT 452 consensus_4267#1 ------------------------------------------------------------ consensus_4267#0 TGTGAGGTGATAGTGTGTGGATTGATGGTATTGGATCANGAAGCGAGAGGGAGAGAGAGA 512 consensus_4267#1 ------------------------------------------------------------ consensus_4267#0 TTGNAGTAGTTGTGGTTCATCAGCGATTGGGCATGTGGACATATGATGTGGTCTAGTGAA 572 consensus_4267#1 ------------------------------------------------------------ consensus_4267#0 GCGATCCTATCGGTCATGCGTCACGATGATACCGGTGTGTGTNGNGTGGTGTTGCTGAG 631 consensus_4267#1 ----------------------------------------------------------- |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||