cluster # 4271

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Schistosoma mansoni
cluster # 4271 cluster # 4271 Sequences # 3 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_4271#0 length = 643 sequences # 2

consensus_4271#1 length = 620 sequences # 1

consensusID : consensus_4271#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 643
fasta sequence

                              [ATACAAAAATTGCTTAAACTGAATTGTGTGAAACCAGTTCCCGAGTTAAAGGATACTCAAAATACCCCAGTGGTTTCAGATAGTAACTCGAAGGTCACTTGCAATCTTCCGGTCTCTTCAAAAGCATGTATTTCGACCAATGTACGTATCAAGTTGGATGATTTAAAACGGTTTGAAAGCCCTTCAAATCAAGTGATTCAGAAGGGAAACACGCATTTTGATTTAACGAAAAATACACGAGTAGTAACAAGCCCGTCATCCAACCGTCGCACTCTTTTACCTACTCCTGATGGACCAATTGAGAACACCAAGACTTCTTTGTTCAACTTTCATCGTCCGCCTCTCTTAAAAACTCCTTATAAACCAGTGGATGTTCAAGAAGTAATAAGAATAATCGATGACGTTCATATGGTTTTTGTGGATGAGTTGCGAGGAATCATACATCGGGATATAACCCGAAAGCTTGTTGAAGGTCAGGCATCTAAATTATTTTCCGATTGGTGGGATTCAAAAGAACAAGACTGCAGACAAAATCATGCCAGTAGTCATCACAATACTAAAGAGGAGAGTGTGAGTAGTCATTCTGTAGACCATCCANATACATCTCATGATTCTACCGTTCCATCATATCNAAACCAAAGTG]

[+] EMBL CD189973             [ATACAAAAATTGCTTAAACTGAATTGTGTGAAACCAGTTCCCGAGTTAAAGGATACTCAAAATACCCCAGTGGTTTCAGATAGTAACTCGAAGGTCACTTGCAATCTTCCGGTCTCTTCAAAAGCATGTATTTCGACCAATGTACGTATCAAGTTGGATGATTTAAAACGGTTTGAAAGCCCTTCAAATCAAGTGATTCAGAAGGGAAACACGCATTTTGATTTAACGAAAAATACACGAGTAGTAACAAGCCCGTCATCCAACCGTCGCACTCTTTTACCTACTCCTGATGGACCA                                                                                                                                                                                                                                                                                                                                                          ]
[+] EMBL CD116129             [                                                                                     ACTCGAAGGTCACTTGCAATCTTCCGGTCTCTTCAGAAGCATGTATTTCGACCAATGTACGTATCAAGTTGGATGATTTAAAACGGTTTGAAAGCCCTTCAAATCAAGTGATTCAGAAGGGAAACACGCATTTTGATTCAACGAAAAATACACGAGTAGTAACAAGCCCGTCATCCAACCGTCGCACTCTTTTACCTACTCCTGATGGACCAATTGAGAACACCAAGACTTCTTTGTTCAACTTTCATCGTCCGCCTCTCTTAAAAACTCCTTATAAACCAGTGGATGTTCAAGAAGTAATAAGAATAATCGATGACGTTCATATGGTTTTTGTGGATGAGTTGCGAGGAATCATACATCGGGATATAACCCGAAAGCTTGTTGAAGGTCAGGCATCTAAATTATTTTCCGATTGGTGGGATTCAAAAGAACAAGACTGCAGACAAAATCATGCCAGTAGTCATCACAATACTAAAGAGGAGAGTGTGAGTAGTCATTCTGTAGACCATCCANATACATCTCATGATTCTACCGTTCCATCATATCNAAACCAAAGTG]




>consensus_4271#0
ATACAAAAATTGCTTAAACTGAATTGTGTGAAACCAGTTCCCGAGTTAAAGGATACTCAA
AATACCCCAGTGGTTTCAGATAGTAACTCGAAGGTCACTTGCAATCTTCCGGTCTCTTCA
AAAGCATGTATTTCGACCAATGTACGTATCAAGTTGGATGATTTAAAACGGTTTGAAAGC
CCTTCAAATCAAGTGATTCAGAAGGGAAACACGCATTTTGATTTAACGAAAAATACACGA
GTAGTAACAAGCCCGTCATCCAACCGTCGCACTCTTTTACCTACTCCTGATGGACCAATT
GAGAACACCAAGACTTCTTTGTTCAACTTTCATCGTCCGCCTCTCTTAAAAACTCCTTAT
AAACCAGTGGATGTTCAAGAAGTAATAAGAATAATCGATGACGTTCATATGGTTTTTGTG
GATGAGTTGCGAGGAATCATACATCGGGATATAACCCGAAAGCTTGTTGAAGGTCAGGCA
TCTAAATTATTTTCCGATTGGTGGGATTCAAAAGAACAAGACTGCAGACAAAATCATGCC
AGTAGTCATCACAATACTAAAGAGGAGAGTGTGAGTAGTCATTCTGTAGACCATCCANAT
ACATCTCATGATTCTACCGTTCCATCATATCNAAACCAAAGTG

consensusID : consensus_4271#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 620
fasta sequence

                              [CTCCAGGCCAANAATTTGGCACGAGGAAAATACACGAGTAGTAACAAGCCCGTCATCCAACCGTCGCACTCTTTTACCTACTCCTGATGGACCAATTGAGAACACCAAGACTTCTTTGTTCAACTTTCATCGTCCGCCTCTCTTAAAAACTCCTTATAAACCAGTGGATGTTCAAGAAGTAATAAGAATAATCGATGACGTTCATATGGTTTTTGTGGATGAGTTGCGAGGAATCATACATCGGGATATAACCCGAAAGCTTGTTGAAGGTCAGGCATTTAAATTATTTTCCGATTGGTGGGATTCAAAAGAACAAGACTGCAGACAAAATCATGCCAGTAGTCATCACAATACTAAAGAGGAGAGTGTGAGTAGTCATTCTGTAGACCATCCAAATACATCTCATGATTCTACCGTTCCATCATATCAAAACCAAAGTGTTAGTGGGAACATGTCTAATTCCTCATTTGCTCCTACTTCAGTTTCTTCTAGTATTCCTGTGTCAACCATGTCTGACAGTAACTCCGTATCTTCAAACTNTAAACTTTTTGGTTTGGGTATGTTTACAACCTTAAGATCTGCTNTACCAAAAATTAAACGCAAACCTCGTCCACCAAGTC]

[+] EMBL CD081072             [CTCCAGGCCAANAATTTGGCACGAGGAAAATACACGAGTAGTAACAAGCCCGTCATCCAACCGTCGCACTCTTTTACCTACTCCTGATGGACCAATTGAGAACACCAAGACTTCTTTGTTCAACTTTCATCGTCCGCCTCTCTTAAAAACTCCTTATAAACCAGTGGATGTTCAAGAAGTAATAAGAATAATCGATGACGTTCATATGGTTTTTGTGGATGAGTTGCGAGGAATCATACATCGGGATATAACCCGAAAGCTTGTTGAAGGTCAGGCATTTAAATTATTTTCCGATTGGTGGGATTCAAAAGAACAAGACTGCAGACAAAATCATGCCAGTAGTCATCACAATACTAAAGAGGAGAGTGTGAGTAGTCATTCTGTAGACCATCCAAATACATCTCATGATTCTACCGTTCCATCATATCAAAACCAAAGTGTTAGTGGGAACATGTCTAATTCCTCATTTGCTCCTACTTCAGTTTCTTCTAGTATTCCTGTGTCAACCATGTCTGACAGTAACTCCGTATCTTCAAACTNTAAACTTTTTGGTTTGGGTATGTTTACAACCTTAAGATCTGCTNTACCAAAAATTAAACGCAAACCTCGTCCACCAAGTC]




>consensus_4271#1
CTCCAGGCCAANAATTTGGCACGAGGAAAATACACGAGTAGTAACAAGCCCGTCATCCAA
CCGTCGCACTCTTTTACCTACTCCTGATGGACCAATTGAGAACACCAAGACTTCTTTGTT
CAACTTTCATCGTCCGCCTCTCTTAAAAACTCCTTATAAACCAGTGGATGTTCAAGAAGT
AATAAGAATAATCGATGACGTTCATATGGTTTTTGTGGATGAGTTGCGAGGAATCATACA
TCGGGATATAACCCGAAAGCTTGTTGAAGGTCAGGCATTTAAATTATTTTCCGATTGGTG
GGATTCAAAAGAACAAGACTGCAGACAAAATCATGCCAGTAGTCATCACAATACTAAAGA
GGAGAGTGTGAGTAGTCATTCTGTAGACCATCCAAATACATCTCATGATTCTACCGTTCC
ATCATATCAAAACCAAAGTGTTAGTGGGAACATGTCTAATTCCTCATTTGCTCCTACTTC
AGTTTCTTCTAGTATTCCTGTGTCAACCATGTCTGACAGTAACTCCGTATCTTCAAACTN
TAAACTTTTTGGTTTGGGTATGTTTACAACCTTAAGATCTGCTNTACCAAAAATTAAACG
CAAACCTCGTCCACCAAGTC

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_4271#0      ATACAAAAATTGCTTAAACTGAATTGTGTGAAACCAGTTCCCGAGTTAAAGGATACTCAA 60
consensus_4271#1      ------------------------------------------------------------
                                                                                  

consensus_4271#0      AATACCCCAGTGGTTTCAGATAGTAACTCGAAGGTCACTTGCAATCTTCCGGTCTCTTCA 120
consensus_4271#1      ------------------------------------------------------------
                                                                                  

consensus_4271#0      AAAGCATGTATTTCGACCAATGTACGTATCAAGTTGGATGATTTAAAACGGTTTGAAAGC 180
consensus_4271#1      ------------------------------------------------------------
                                                                                  

consensus_4271#0      CCTTCAAATCAAGTGATTCAGAAGGGAAACACGCATTTTGATTTAACGAAAAATACACGA 240
consensus_4271#1      ----------------------CTCCAGGCCAANAATTTGGCACGA-GGAAAATACACGA 37
                                                *  *    * ****     * * ***********

consensus_4271#0      GTAGTAACAAGCCCGTCATCCAACCGTCGCACTCTTTTACCTACTCCTGATGGACCAATT 300
consensus_4271#1      GTAGTAACAAGCCCGTCATCCAACCGTCGCACTCTTTTACCTACTCCTGATGGACCAATT 97
                      ************************************************************

consensus_4271#0      GAGAACACCAAGACTTCTTTGTTCAACTTTCATCGTCCGCCTCTCTTAAAAACTCCTTAT 360
consensus_4271#1      GAGAACACCAAGACTTCTTTGTTCAACTTTCATCGTCCGCCTCTCTTAAAAACTCCTTAT 157
                      ************************************************************

consensus_4271#0      AAACCAGTGGATGTTCAAGAAGTAATAAGAATAATCGATGACGTTCATATGGTTTTTGTG 420
consensus_4271#1      AAACCAGTGGATGTTCAAGAAGTAATAAGAATAATCGATGACGTTCATATGGTTTTTGTG 217
                      ************************************************************

consensus_4271#0      GATGAGTTGCGAGGAATCATACATCGGGATATAACCCGAAAGCTTGTTGAAGGTCAGGCA 480
consensus_4271#1      GATGAGTTGCGAGGAATCATACATCGGGATATAACCCGAAAGCTTGTTGAAGGTCAGGCA 277
                      ************************************************************

consensus_4271#0      TCTAAATTATTTTCCGATTGGTGGGATTCAAAAGAACAAGACTGCAGACAAAATCATGCC 540
consensus_4271#1      TTTAAATTATTTTCCGATTGGTGGGATTCAAAAGAACAAGACTGCAGACAAAATCATGCC 337
                      * **********************************************************

consensus_4271#0      AGTAGTCATCACAATACTAAAGAGGAGAGTGTGAGTAGTCATTCTGTAGACCATCCANAT 600
consensus_4271#1      AGTAGTCATCACAATACTAAAGAGGAGAGTGTGAGTAGTCATTCTGTAGACCATCCAAAT 397
                      ********************************************************* **

consensus_4271#0      ACATCTCATGATTCTACCGTTCCATCATATCNAAACCAAAGTG----------------- 643
consensus_4271#1      ACATCTCATGATTCTACCGTTCCATCATATCAAAACCAAAGTGTTAGTGGGAACATGTCT 457
                      ******************************* ***********                 

consensus_4271#0      ------------------------------------------------------------
consensus_4271#1      AATTCCTCATTTGCTCCTACTTCAGTTTCTTCTAGTATTCCTGTGTCAACCATGTCTGAC 517
                                                                                  

consensus_4271#0      ------------------------------------------------------------
consensus_4271#1      AGTAACTCCGTATCTTCAAACTNTAAACTTTTTGGTTTGGGTATGTTTACAACCTTAAGA 577
                                                                                  

consensus_4271#0      -------------------------------------------
consensus_4271#1      TCTGCTNTACCAAAAATTAAACGCAAACCTCGTCCACCAAGTC 620