cluster # 4273

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Schistosoma mansoni
cluster # 4273 cluster # 4273 Sequences # 3 consensus # 3

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_4273#0 length = 516 sequences # 1

consensus_4273#1 length = 407 sequences # 1
consensus_4273#2 length = 199 sequences # 1

consensusID : consensus_4273#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 516
fasta sequence

                              [AACTAAAGTAAGTGATTAAGCATAACTTTTCATGTGTATGCAGTAACTGTTCTATTGTAATCAGATTCATCGAGAAATGACTTCAATTTGTCTACTGACTATCATGTGGATACATCTGCGAGTAAAGGCTTCCTGTTATAGCAATTTGCTTGAGTGCCCTGTTTGATATATGAAGTTATAAGACCGCCAATCAGAGAGCAGTGAATTATCGATCAGAGCAATAATACACAAAATCGTATGAGCAGTCTTAAGTACTTATCAGTCTTGCTTTCTGCCTAGCCCAGCCAGTTAAGTCCAGAACACCAATAGCAGCCTCTGCAATATGAATCATTATTCTCAAACATACTGAGTCTATATACCAAACAGACTGACCACATCGTACAAATAAAATAGGAAATAACATTTGTACAAGATTTGGCCAAATGTGGCTGTGAATGTAGGAGGCAGCAATTAATAGACTAGGGATAACTCAGGAATGGTAAATCGTATAATAATAGTCTATAGGTCAAAATAAAG]

[+] EMBL CD088155             [AACTAAAGTAAGTGATTAAGCATAACTTTTCATGTGTATGCAGTAACTGTTCTATTGTAATCAGATTCATCGAGAAATGACTTCAATTTGTCTACTGACTATCATGTGGATACATCTGCGAGTAAAGGCTTCCTGTTATAGCAATTTGCTTGAGTGCCCTGTTTGATATATGAAGTTATAAGACCGCCAATCAGAGAGCAGTGAATTATCGATCAGAGCAATAATACACAAAATCGTATGAGCAGTCTTAAGTACTTATCAGTCTTGCTTTCTGCCTAGCCCAGCCAGTTAAGTCCAGAACACCAATAGCAGCCTCTGCAATATGAATCATTATTCTCAAACATACTGAGTCTATATACCAAACAGACTGACCACATCGTACAAATAAAATAGGAAATAACATTTGTACAAGATTTGGCCAAATGTGGCTGTGAATGTAGGAGGCAGCAATTAATAGACTAGGGATAACTCAGGAATGGTAAATCGTATAATAATAGTCTATAGGTCAAAATAAAG]




>consensus_4273#0
AACTAAAGTAAGTGATTAAGCATAACTTTTCATGTGTATGCAGTAACTGTTCTATTGTAA
TCAGATTCATCGAGAAATGACTTCAATTTGTCTACTGACTATCATGTGGATACATCTGCG
AGTAAAGGCTTCCTGTTATAGCAATTTGCTTGAGTGCCCTGTTTGATATATGAAGTTATA
AGACCGCCAATCAGAGAGCAGTGAATTATCGATCAGAGCAATAATACACAAAATCGTATG
AGCAGTCTTAAGTACTTATCAGTCTTGCTTTCTGCCTAGCCCAGCCAGTTAAGTCCAGAA
CACCAATAGCAGCCTCTGCAATATGAATCATTATTCTCAAACATACTGAGTCTATATACC
AAACAGACTGACCACATCGTACAAATAAAATAGGAAATAACATTTGTACAAGATTTGGCC
AAATGTGGCTGTGAATGTAGGAGGCAGCAATTAATAGACTAGGGATAACTCAGGAATGGT
AAATCGTATAATAATAGTCTATAGGTCAAAATAAAG

consensusID : consensus_4273#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 407
fasta sequence

                              [GTAGACATACTGAGTTTATATGCCAAACAGACTGACCACTTCGTATCGATGAAATAGGAAATAACATTTGTACAAGATTTAGCTAAATATGGCTGTGAATGTGGGAGGCAGAAATTAATAGACTAGGGATAACTCAAGAATGGTAAATCGTACAATAATAGTCTATAGGTCAAAATAAAGCTTATAAGGGGAACATGAGTATGGATAGTTTAGTTATATAGCAATTATACGACAATAAATATATGCATAATACTGGTCCATAAATGGATCGCAAAGTTACCATTCACCATTGTTATCGGGACAACAGACGGATCGTATCTAACTACCGGCCCGTCAGCCTAACTAGCATGGTCGTTAAGATTCGTACAATCTGTTAACTCCCGAACAACATGGGTTTCGTAACAACG]

[-] EMBL CD060840             [GTAGACATACTGAGTTTATATGCCAAACAGACTGACCACTTCGTATCGATGAAATAGGAAATAACATTTGTACAAGATTTAGCTAAATATGGCTGTGAATGTGGGAGGCAGAAATTAATAGACTAGGGATAACTCAAGAATGGTAAATCGTACAATAATAGTCTATAGGTCAAAATAAAGCTTATAAGGGGAACATGAGTATGGATAGTTTAGTTATATAGCAATTATACGACAATAAATATATGCATAATACTGGTCCATAAATGGATCGCAAAGTTACCATTCACCATTGTTATCGGGACAACAGACGGATCGTATCTAACTACCGGCCCGTCAGCCTAACTAGCATGGTCGTTAAGATTCGTACAATCTGTTAACTCCCGAACAACATGGGTTTCGTAACAACG]




>consensus_4273#1
GTAGACATACTGAGTTTATATGCCAAACAGACTGACCACTTCGTATCGATGAAATAGGAA
ATAACATTTGTACAAGATTTAGCTAAATATGGCTGTGAATGTGGGAGGCAGAAATTAATA
GACTAGGGATAACTCAAGAATGGTAAATCGTACAATAATAGTCTATAGGTCAAAATAAAG
CTTATAAGGGGAACATGAGTATGGATAGTTTAGTTATATAGCAATTATACGACAATAAAT
ATATGCATAATACTGGTCCATAAATGGATCGCAAAGTTACCATTCACCATTGTTATCGGG
ACAACAGACGGATCGTATCTAACTACCGGCCCGTCAGCCTAACTAGCATGGTCGTTAAGA
TTCGTACAATCTGTTAACTCCCGAACAACATGGGTTTCGTAACAACG

consensusID : consensus_4273#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 199
fasta sequence

                              [GAATTCGGCACGAGGAGAATGTCAACTTGTTCTCTATTCTATTATTTATTTTTTTAAAAATGGCATTATTCATGACTAAACTATTATCAAATTTGTATCTATAATGCATGTCTTAAACAATATCATAATGTTTGCATGTATATATCCTGCTTGAACTGCACATACAAATAATACCCCCATATATTAAGTCAGTCAATCA]

[+] EMBL CD077503             [GAATTCGGCACGAGGAGAATGTCAACTTGTTCTCTATTCTATTATTTATTTTTTTAAAAATGGCATTATTCATGACTAAACTATTATCAAATTTGTATCTATAATGCATGTCTTAAACAATATCATAATGTTTGCATGTATATATCCTGCTTGAACTGCACATACAAATAATACCCCCATATATTAAGTCAGTCAATCA]




>consensus_4273#2
GAATTCGGCACGAGGAGAATGTCAACTTGTTCTCTATTCTATTATTTATTTTTTTAAAAA
TGGCATTATTCATGACTAAACTATTATCAAATTTGTATCTATAATGCATGTCTTAAACAA
TATCATAATGTTTGCATGTATATATCCTGCTTGAACTGCACATACAAATAATACCCCCAT
ATATTAAGTCAGTCAATCA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_4273#0      AACTAAAGTAAGTGATTAAGCATAACTTTTCATGTGTATGCAGTAACTGTTCTATTGTAA 60
consensus_4273#1      -----------GTAGACATAC-TGAGTTTATATGC-CAAACAG--ACTGACCACTTCGTA 45
consensus_4273#2      ------------------------------------------------------------
                                                                                  

consensus_4273#0      TCAGATTCATCGAGAAATGACTTCAATTTGTCTACTGACTATCATGTGGATACATCTGCG 120
consensus_4273#1      TC-GATGAAATAGGAAATAAC----ATTTGTACAAGATTTAGC---TAAATATGGCTGTG 97
consensus_4273#2      ------------------------------------------------------------
                                                                                  

consensus_4273#0      AGTAAAGGCTTCCTGTTATAGCAATTTGCTTGAGTGCCCTGTTTGATATATGAAGTTATA 180
consensus_4273#1      AATGTGGGAGGCAGAAATTAATAGACT-----AGGGATAACTCAAGAATGGTAAATCGTA 152
consensus_4273#2      --------------------------------------------GAATTCGGCACGAGGA 16
                                                                      *    *     *

consensus_4273#0      AGACCGCCAATCAGAGAGCAGTGAATTATCGATCAGAGCAATAATACACAAAATCGTATG 240
consensus_4273#1      CAATAATAGTCTATAGGTCAAAATAAAGCTTATAAGGGGAACATGA---------GTATG 203
consensus_4273#2      GAATGTCAACTTGTTCTCTATTCTATTATTTATTTTTTTAAAAATG---------GCATT 67
                        *                *    *      **      ** *            * ** 

consensus_4273#0      AGCAGTC-TTAAGTACTTATCAGTCTTGCTTTC-TGCCTAGCCCAGCCAGTTAAGTCCAG 298
consensus_4273#1      GATAGT--TTAGTTATATAGCAATTATACGACAATAAATATATGCATAATACTGGTCCAT 261
consensus_4273#2      ATTCATGACTAAACTATTATCAAATTTGTATCTATAA-TGCATGTCTTAAACAATATCAT 126
                           *   **      ** **    *       *   *         *        ** 

consensus_4273#0      AACACCAATAGCAGCCTCTGCAATATGAATCATTATTCTCAAACATACTGAGTCTATATA 358
consensus_4273#1      AA-ATGGATCGCAAAGT---TACCATTCACCATTGTTATCGGGACAACAGACGGATCGTA 317
consensus_4273#2      AATGTTTGCATGTATATATCCTGCTTGAACTGCACATACAAATAATAC---CCCCATATA 183
                      **              *        *  *       *         **          **

consensus_4273#0      CCAAACAGACTGACCACATCGTACAAATAAAATAGGAAATAACATTTGTACAAGATTTGG 418
consensus_4273#1      TCTAACT-ACCGGCCCGTCAGCCTAACTAGCATGGTCGTTAAGATTCGTACAA---TCTG 373
consensus_4273#2      TTAAGTCAGTCAATCA-------------------------------------------- 199
                         *          *                                             

consensus_4273#0      CCAAATGTGGCTGTGAATGTAGGAGGCAGCAATTAATAGACTAGGGATAACTCAGGAATG 478
consensus_4273#1      TTAACTCCCGAACAACATGGGTTTCGTAACAACG-------------------------- 407
consensus_4273#2      ------------------------------------------------------------
                                                                                  

consensus_4273#0      GTAAATCGTATAATAATAGTCTATAGGTCAAAATAAAG 516
consensus_4273#1      --------------------------------------
consensus_4273#2      --------------------------------------