cluster # 4275

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Schistosoma mansoni
cluster # 4275 cluster # 4275 Sequences # 3 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_4275#0 length = 478 sequences # 2

consensus_4275#1 length = 273 sequences # 1

consensusID : consensus_4275#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 478
fasta sequence

                              [GGAATAAAAGAAATTAGAACAACCATTTAAAAAATGCGCGATCATGAAAGACAAATTTTTCTTTAGGGGAGAAAAAATTGATTCATTTATTTGGTTATTGATTGATAGGATCAATGAATGACAAAAAATAACTGGCGCAGTGACAAGAAATATTCACAATATCAAATATGCATCTGAGCACATTTGATAATGAAAAATAACGGTAAACTGATAGGGAAAAACAATCAACTTTTCCTTTTTTTTTAATAAACAATTATTGATAAATATTCATGACCATAATTCAACAGTACAGTGTTTATTTGAGCTTTTACTTGTTAATTTATACTGTTTAGTATATTCAGTTGTAGTCATGTTAGGCTTTGGATTGTGTTTTTTACCATGATAATTTGTATTATTGTTGGCTTTTATATATGCTGCTGTTGTTGATGATGATGATGGTGAACTGTTTAAACTATTATTATTGGCATTATTATTCTCA]

[+] EMBL CD066653             [GGAATAAAAGAAATTAGAACAACCATTTAAAAAATGCGCGATCATGAAAGACAAATTTTTCTTTAGGGGAGAAAAAATTGATTCATTTATTTGGTTATTGATTGATAGGATCAATGAATGACAAAAAATAACTGGCGCAGTGACAAGAAATATTCACAATATCAAATATGCATCTGAGCACATTTGATAATGAAAAATAACGGTAAACTGATAGGGAAAAACAATCAACTTTTCCTTTTTTTTTAATAAACAATTATTGATAAATATTCATGACCATAATTCAACAGTACAGTGTTTATTTGAGCTTTTACTTGTTAATTTATACTGTTTAGTATATTCAGTTGTAGTCATGTTAGGCTTTGGATTGTGTTTTTTACCATGATAATTTGTATTATTGTTGGCTTTTATATATGCTGCTGTTGTTGATGATGATGATGGTGAACTGTTTAAACTATTATTATTGGCATTATTATTCTCA]
[+] EMBL CD066651             [GGAATAAAAGAAATTAGAACAACCATTTAAAAAATGCGCGATCATGAAAGACAAATTTTTCTTTAAGGGAGAAAAAAGTGATTCATTTATTTGGTTATTGATTGATAGGATCAATGAATGACATAAAATAACTGGCGCAGTGACAAGAAATATTCACAATATCAAATATGCATATGAGCACATTTGATAATGAAAAATAACGGTACACTGATAGGGAAAAACAATCAACTTTTCCTTTTTTTTTAATAAACAATTATTGATAAATATTCATGACCATAATTCAACAGTACAGTGTTTATTTGAGCTTTTACTTGTTAATATATACTGTATAGTATATTCAGTT                                                                                                                                       ]




>consensus_4275#0
GGAATAAAAGAAATTAGAACAACCATTTAAAAAATGCGCGATCATGAAAGACAAATTTTT
CTTTAGGGGAGAAAAAATTGATTCATTTATTTGGTTATTGATTGATAGGATCAATGAATG
ACAAAAAATAACTGGCGCAGTGACAAGAAATATTCACAATATCAAATATGCATCTGAGCA
CATTTGATAATGAAAAATAACGGTAAACTGATAGGGAAAAACAATCAACTTTTCCTTTTT
TTTTAATAAACAATTATTGATAAATATTCATGACCATAATTCAACAGTACAGTGTTTATT
TGAGCTTTTACTTGTTAATTTATACTGTTTAGTATATTCAGTTGTAGTCATGTTAGGCTT
TGGATTGTGTTTTTTACCATGATAATTTGTATTATTGTTGGCTTTTATATATGCTGCTGT
TGTTGATGATGATGATGGTGAACTGTTTAAACTATTATTATTGGCATTATTATTCTCA

consensusID : consensus_4275#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 273
fasta sequence

                              [TTCATCGTGATACAACAACATACTTTCTAATAAATAGTCGATAAATGTAAAACTATAACATTTTATATCTTTAATTTACTCTTTTTTTTCTCCGATTTTCATTTCCCACAGAATATAACTCTATCCAAAAACATTTCAACTATTTATAGAATCGCATAAATTATTCTCTCTTTCAACCTTATCAAACTAATAACACATTATGACATTATTCAGAATTTATTCTGTACACCAATCTATTCATAAGTGAGAATAATAATGACAATAATAATAGTT]

[+] EMBL CD068471             [TTCATCGTGATACAACAACATACTTTCTAATAAATAGTCGATAAATGTAAAACTATAACATTTTATATCTTTAATTTACTCTTTTTTTTCTCCGATTTTCATTTCCCACAGAATATAACTCTATCCAAAAACATTTCAACTATTTATAGAATCGCATAAATTATTCTCTCTTTCAACCTTATCAAACTAATAACACATTATGACATTATTCAGAATTTATTCTGTACACCAATCTATTCATAAGTGAGAATAATAATGACAATAATAATAGTT]




>consensus_4275#1
TTCATCGTGATACAACAACATACTTTCTAATAAATAGTCGATAAATGTAAAACTATAACA
TTTTATATCTTTAATTTACTCTTTTTTTTCTCCGATTTTCATTTCCCACAGAATATAACT
CTATCCAAAAACATTTCAACTATTTATAGAATCGCATAAATTATTCTCTCTTTCAACCTT
ATCAAACTAATAACACATTATGACATTATTCAGAATTTATTCTGTACACCAATCTATTCA
TAAGTGAGAATAATAATGACAATAATAATAGTT

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_4275#0      GGAATAAAAGAAATTAGAACAACCATTTAAAAAATGCGCGATCATGAAAGACAAATTTTT 60
consensus_4275#1      ------------------------------------------------------------
                                                                                  

consensus_4275#0      CTTTAGGGGAGAAAAAATTGATTCATTTATTTGGTTATTGATTGATAGGATCAATGAATG 120
consensus_4275#1      ------------------------------------------------------------
                                                                                  

consensus_4275#0      ACAAAAAATAACTGGCGCAGTGACAAGAAATATTCACAATATCA-AATATGCATCTGAGC 179
consensus_4275#1      -----------------------------TTCATCGTGATACAACAACATACTTTCTAAT 31
                                                    *  **   ***  * ** ** * *   *  

consensus_4275#0      ACATTTGATAATGAAAAATAACGGTAAACTGATAGGGAAAAACAATCAACTTTTCCTTTT 239
consensus_4275#1      AAA--TAGTCGATAAATGTAAAACTATAACATTTTATATCTTTAATTTACTCTTT-TTTT 88
                      * *  *  *    ***  ***   ** *    *    *     ***  *** **  ****

consensus_4275#0      TTTTTAATAAACAATTATTGATAAATATTCATGACCATAATTCAACAGTACAGTGTTTAT 299
consensus_4275#1      TCTCCGATTTTCATTTCCCACAGAATAT-----AACTCTATCCAAAAACATTTCAACTAT 143
                      * *   **   ** **       *****     * *   ** *** *  *       ***

consensus_4275#0      TTGAGCTTTTACTTGTTAATTTATACTGTTTAGTATATTCAGTTGTAGTCATGTTAGGCT 359
consensus_4275#1      TTATAGAATCGCAT---AAATTATTCTCTCTTTCA-ACCTTATCAAACTAATAACACATT 199
                      **      *  * *   ** **** ** * *   * *     *   * * **   *   *

consensus_4275#0      TTGGATTGTGTTTTTTACCATGATAATTTGTATTATTGTTGGCTTTTATATATGCTGCTG 419
consensus_4275#1      ----ATGACATTATTCAGAATT-TATTCTGTACACCAATCTA--TTCATAAGTGAGAATA 252
                          **    ** ** *  **  ** * ****      *     ** ***  **    * 

consensus_4275#0      TTGTTGATGATGATGATGGTGAACTGTTTAAACTATTATTATTGGCATTATTATTCTCA 478
consensus_4275#1      ATAATGACAATAATAATAGTT-------------------------------------- 273
                       *  ***  ** ** ** **