cluster # 4278

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Schistosoma mansoni
cluster # 4278 cluster # 4278 Sequences # 3 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_4278#0 length = 430 sequences # 2

consensus_4278#1 length = 148 sequences # 1

consensusID : consensus_4278#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 430
fasta sequence

                              [ACACCAGCAGCACCTCGTATAGCAAGTGAATCCTTCAAAACAACTAATTTACAGGACCGACACAGTACATATCGTCCAAGTTTAGATCCAGCATGGATATCTCAAACAAATGAAAGTGGCTCAGAAACAGCATCTATTTTTAGCGTTAGCTCTTCTATGCGGACTCCATCCACGAATAGTGTTAGGAATGGATCAGCGATCTTGCAGTTGTTATTAGCAAACCGTGACAATATTGCGGATTTGGATACCACCAACTTGCCTAGAATGATTGCTCTTCAAAGAGGTCCGAATGGTTTTGGATTTGTTGTACGAGGTAAAAAAGGAGTATCCGGGAATTTTACACCATCTCTTGAGTGTCCAGCATCACAATACCTTGAAAAAGTTGAACCGCATAGTGCAGCAAGTAGGGCAGGTTTGAAAGCAGGTGATT]

[+] EMBL CD067050             [ACACCAGCAGCACCTCGTATAGCAAGTGAATCCTTCAAAACAACTAATTTACAGGACCGACACAGTACATATCGTCCAAGTTTAGATCCAGCATGGATATCTCAAACAAATGAAAGTGGCTCAGAAACAGCATCTATTTTTAGCGTTAGCTCTTCTATGCGGACTCCATCCACGAATAGTGTTAGGAATGGATCAGCGATCTTGCAGTTGTTATTAGCAAACCGTGACAATATTGCGGATTTGGATACCACCAACTTGCCTAGAATGATTGCTCTTCAAAGAGGTCCGAATGGTTTTGGATTTGTTGTACGAGGTAAAAAAGGAGTATCCGGGAATTTTACACCATCTCTTGAGTGTCCAGCATCACAATACCTTGAAAAAGTTGAACCGCATAGTGCAGCAAGTAGGGCAGGTTTGAAAGCAGGTGATT]
[+] EMBL CD066659             [ACACCAGCAGCACCTCGTATAGCAAGTGAATCCTTCAAAACAACTAATTTACAGGACCGACACAGTACATATCGTCCAAGTTTAGATCCAGCATGGATATCTCAAACAAATGAAAGTGGCTCAGAAACAGCATCTATTTTTAGCGTTAGCTCTTCTATGCGGACTCCATCCACGAATAGTGTTAGGAATGGATCAGCGATCTTGCAGTTGTTATTAGCAAACCGTGACAATATTGCGGATTTGGATACCACCAACTTGCCTAGAATGATTGCTCTTCAAAGAGGTCCGAATGGTTTTGGATTTGTTGTACGAGGTAAAAAAGGAGTATCCGGGAATTTTACACCATCTCATGAGTGTCCAGCATCACAATACCTTG                                                      ]




>consensus_4278#0
ACACCAGCAGCACCTCGTATAGCAAGTGAATCCTTCAAAACAACTAATTTACAGGACCGA
CACAGTACATATCGTCCAAGTTTAGATCCAGCATGGATATCTCAAACAAATGAAAGTGGC
TCAGAAACAGCATCTATTTTTAGCGTTAGCTCTTCTATGCGGACTCCATCCACGAATAGT
GTTAGGAATGGATCAGCGATCTTGCAGTTGTTATTAGCAAACCGTGACAATATTGCGGAT
TTGGATACCACCAACTTGCCTAGAATGATTGCTCTTCAAAGAGGTCCGAATGGTTTTGGA
TTTGTTGTACGAGGTAAAAAAGGAGTATCCGGGAATTTTACACCATCTCTTGAGTGTCCA
GCATCACAATACCTTGAAAAAGTTGAACCGCATAGTGCAGCAAGTAGGGCAGGTTTGAAA
GCAGGTGATT

consensusID : consensus_4278#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 148
fasta sequence

                              [TCTTGCCAACTAATTCACAGGACCGACACAGTACATATCGTCCAAGTTTATATCCAGCATGGATATCTCATACAAATGAAAGTGGCTCACAAACAGCATCTATTTTTAGCGCTGGCTCTTATATGCGGAGTAGGCCAATAATTATTTG]

[+] EMBL CD067608             [TCTTGCCAACTAATTCACAGGACCGACACAGTACATATCGTCCAAGTTTATATCCAGCATGGATATCTCATACAAATGAAAGTGGCTCACAAACAGCATCTATTTTTAGCGCTGGCTCTTATATGCGGAGTAGGCCAATAATTATTTG]




>consensus_4278#1
TCTTGCCAACTAATTCACAGGACCGACACAGTACATATCGTCCAAGTTTATATCCAGCAT
GGATATCTCATACAAATGAAAGTGGCTCACAAACAGCATCTATTTTTAGCGCTGGCTCTT
ATATGCGGAGTAGGCCAATAATTATTTG

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_4278#0      ACACCAGCAGCACCTCGTATAGCAAGTGAATCCTTCAAAACAACTAATTTACAGGACCGA 60
consensus_4278#1      ----------------------------------TCTTGCCAACTAATTCACAGGACCGA 26
                                                        **    ********* **********

consensus_4278#0      CACAGTACATATCGTCCAAGTTTAGATCCAGCATGGATATCTCAAACAAATGAAAGTGGC 120
consensus_4278#1      CACAGTACATATCGTCCAAGTTTATATCCAGCATGGATATCTCATACAAATGAAAGTGGC 86
                      ************************ ******************* ***************

consensus_4278#0      TCAGAAACAGCATCTATTTTTAGCGTTAGCTCTTCTATGCGGACTCCATCCACGAATAGT 180
consensus_4278#1      TCACAAACAGCATCTATTTTTAGCGCTGGCTCTTATATGCGGAGTAGGCCAATAATTATT 146
                      *** ********************* * ****** ******** *    * *  * ** *

consensus_4278#0      GTTAGGAATGGATCAGCGATCTTGCAGTTGTTATTAGCAAACCGTGACAATATTGCGGAT 240
consensus_4278#1      TG---------------------------------------------------------- 148
                                                                                  

consensus_4278#0      TTGGATACCACCAACTTGCCTAGAATGATTGCTCTTCAAAGAGGTCCGAATGGTTTTGGA 300
consensus_4278#1      ------------------------------------------------------------
                                                                                  

consensus_4278#0      TTTGTTGTACGAGGTAAAAAAGGAGTATCCGGGAATTTTACACCATCTCTTGAGTGTCCA 360
consensus_4278#1      ------------------------------------------------------------
                                                                                  

consensus_4278#0      GCATCACAATACCTTGAAAAAGTTGAACCGCATAGTGCAGCAAGTAGGGCAGGTTTGAAA 420
consensus_4278#1      ------------------------------------------------------------
                                                                                  

consensus_4278#0      GCAGGTGATT 430
consensus_4278#1      ----------