cluster # 428

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Schistosoma mansoni
cluster # 428 cluster # 428 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_428#0 length = 522 sequences # 1

consensus_428#1 length = 322 sequences # 1

consensusID : consensus_428#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 522
fasta sequence

                              [ATTTTTATGATCTATATTTATGATATTGCCTGTTTCCAATTTAATCTGTAACTGTGATGGCAATAGTGCCCTTTATGTACAGAAATCAGTTATAGAACTGTGTGGACATTGATTCCCCCATTCACTAGCGTGAGTTTATCAAGGCTTTGGTACTCCTGTTTCTGTAATTCTATGTTCACTGATACTGTCTGTAATGTCCTAAGACCTGGGAAATCCTAAGCCCTCTAAGGCTCTAATATCCCCTGATTTATTGAGCTTATAAAAATAAGTAATAAAAACTCTGCTTTACTATCTTTGTAGTGTTGACATCAAATGAACTTTATTAAGAAGTTGCATACATAGTATATAACCTTCATTGCACCATGTATCAGTTGCTTTTTATTGCTGTGATAAAACACCATGAACAAAAGCAAATTATGGAAGAAAGAGACTATTTGGGCTTACAGGGCCAGAGGGGAATCCCGAGAATTCATATCTCAGTCTACAGGAGGAAGCAGCAAGGGTAAACGGAGTGGGGGGGTT]

[+] EMBL AI740380             [ATTTTTATGATCTATATTTATGATATTGCCTGTTTCCAATTTAATCTGTAACTGTGATGGCAATAGTGCCCTTTATGTACAGAAATCAGTTATAGAACTGTGTGGACATTGATTCCCCCATTCACTAGCGTGAGTTTATCAAGGCTTTGGTACTCCTGTTTCTGTAATTCTATGTTCACTGATACTGTCTGTAATGTCCTAAGACCTGGGAAATCCTAAGCCCTCTAAGGCTCTAATATCCCCTGATTTATTGAGCTTATAAAAATAAGTAATAAAAACTCTGCTTTACTATCTTTGTAGTGTTGACATCAAATGAACTTTATTAAGAAGTTGCATACATAGTATATAACCTTCATTGCACCATGTATCAGTTGCTTTTTATTGCTGTGATAAAACACCATGAACAAAAGCAAATTATGGAAGAAAGAGACTATTTGGGCTTACAGGGCCAGAGGGGAATCCCGAGAATTCATATCTCAGTCTACAGGAGGAAGCAGCAAGGGTAAACGGAGTGGGGGGGTT]




>consensus_428#0
ATTTTTATGATCTATATTTATGATATTGCCTGTTTCCAATTTAATCTGTAACTGTGATGG
CAATAGTGCCCTTTATGTACAGAAATCAGTTATAGAACTGTGTGGACATTGATTCCCCCA
TTCACTAGCGTGAGTTTATCAAGGCTTTGGTACTCCTGTTTCTGTAATTCTATGTTCACT
GATACTGTCTGTAATGTCCTAAGACCTGGGAAATCCTAAGCCCTCTAAGGCTCTAATATC
CCCTGATTTATTGAGCTTATAAAAATAAGTAATAAAAACTCTGCTTTACTATCTTTGTAG
TGTTGACATCAAATGAACTTTATTAAGAAGTTGCATACATAGTATATAACCTTCATTGCA
CCATGTATCAGTTGCTTTTTATTGCTGTGATAAAACACCATGAACAAAAGCAAATTATGG
AAGAAAGAGACTATTTGGGCTTACAGGGCCAGAGGGGAATCCCGAGAATTCATATCTCAG
TCTACAGGAGGAAGCAGCAAGGGTAAACGGAGTGGGGGGGTT

consensusID : consensus_428#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 322
fasta sequence

                              [ATTTTTATGATCTDNATTTCTGTTTTGCCTGTTTCCAATTTTATCTGTAACTGTGATGGCAATAGTGCCCTTTATGTACAGAAATCAGTTATAGAACTGTGTGGACATTGATTCCCCATTCACTAGCGTGAGTTTATCAAGGCTTTGGTACTCCTGTTTCTGTGATTCTATGTTCACTGATACTGTCTGTCATGTCCTAAGACTTGGGAATTCTAAGCCTTCTAAGGCTCTAATATCCCTGGTTTTTTGGAGCTTTAAAATTAAGTTATAAATCTCGGCTTACTATCTTTGAAGTGTTGGACACAATGATTTTTTAAGATTT]

[+] EMBL AI964732             [ATTTTTATGATCTDNATTTCTGTTTTGCCTGTTTCCAATTTTATCTGTAACTGTGATGGCAATAGTGCCCTTTATGTACAGAAATCAGTTATAGAACTGTGTGGACATTGATTCCCCATTCACTAGCGTGAGTTTATCAAGGCTTTGGTACTCCTGTTTCTGTGATTCTATGTTCACTGATACTGTCTGTCATGTCCTAAGACTTGGGAATTCTAAGCCTTCTAAGGCTCTAATATCCCTGGTTTTTTGGAGCTTTAAAATTAAGTTATAAATCTCGGCTTACTATCTTTGAAGTGTTGGACACAATGATTTTTTAAGATTT]




>consensus_428#1
ATTTTTATGATCTDNATTTCTGTTTTGCCTGTTTCCAATTTTATCTGTAACTGTGATGGC
AATAGTGCCCTTTATGTACAGAAATCAGTTATAGAACTGTGTGGACATTGATTCCCCATT
CACTAGCGTGAGTTTATCAAGGCTTTGGTACTCCTGTTTCTGTGATTCTATGTTCACTGA
TACTGTCTGTCATGTCCTAAGACTTGGGAATTCTAAGCCTTCTAAGGCTCTAATATCCCT
GGTTTTTTGGAGCTTTAAAATTAAGTTATAAATCTCGGCTTACTATCTTTGAAGTGTTGG
ACACAATGATTTTTTAAGATTT

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_428#0      ATTTTTATGATCTATATTTATGATATTGCCTGTTTCCAATTTAATCTGTAACTGTGATGG 60
consensus_428#1      ATTTTTATGATCTDNATTTCTGTT-TTGCCTGTTTCCAATTTTATCTGTAACTGTGATGG 59
                     *************  **** ** * ***************** *****************

consensus_428#0      CAATAGTGCCCTTTATGTACAGAAATCAGTTATAGAACTGTGTGGACATTGATTCCCCCA 120
consensus_428#1      CAATAGTGCCCTTTATGTACAGAAATCAGTTATAGAACTGTGTGGACATTGATTCCCC-A 118
                     ********************************************************** *

consensus_428#0      TTCACTAGCGTGAGTTTATCAAGGCTTTGGTACTCCTGTTTCTGTAATTCTATGTTCACT 180
consensus_428#1      TTCACTAGCGTGAGTTTATCAAGGCTTTGGTACTCCTGTTTCTGTGATTCTATGTTCACT 178
                     ********************************************* **************

consensus_428#0      GATACTGTCTGTAATGTCCTAAGACCTGGGAAATCCTAAGCCCTCTAAGGCTCTAATATC 240
consensus_428#1      GATACTGTCTGTCATGTCCTAAGACTTGGGAA-TTCTAAGCCTTCTAAGGCTCTAATATC 237
                     ************ ************ ****** * ******* *****************

consensus_428#0      CCCTGATTTATTGAGCTTATAAAAATAAGTAATAAAAACTCTGCTTTACTATCTTTGTAG 300
consensus_428#1      CCTGGTTTTTTGGAGCTT-TAAAATTAAGTTATAA--ATCTCGGCTTACTATCTTTGAAG 294
                     **  * *** * ****** ***** ***** ****  *    *  ************ **

consensus_428#0      TGTTGACATCAAATGAACTTTATTAAGAAGTTGCATACATAGTATATAACCTTCATTGCA 360
consensus_428#1      TGTTGG-ACACAATGA--TTTTTTAAGATTT----------------------------- 322
                     *****  *   *****  *** ******  *                             

consensus_428#0      CCATGTATCAGTTGCTTTTTATTGCTGTGATAAAACACCATGAACAAAAGCAAATTATGG 420
consensus_428#1      ------------------------------------------------------------
                                                                                 

consensus_428#0      AAGAAAGAGACTATTTGGGCTTACAGGGCCAGAGGGGAATCCCGAGAATTCATATCTCAG 480
consensus_428#1      ------------------------------------------------------------
                                                                                 

consensus_428#0      TCTACAGGAGGAAGCAGCAAGGGTAAACGGAGTGGGGGGGTT 522
consensus_428#1      ------------------------------------------