cluster # 4294

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Schistosoma mansoni
cluster # 4294 cluster # 4294 Sequences # 3 consensus # 3

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_4294#0 length = 574 sequences # 1

consensus_4294#1 length = 492 sequences # 1
consensus_4294#2 length = 290 sequences # 1

consensusID : consensus_4294#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 574
fasta sequence

                              [GATGGAAAAACTCTGGAAGATGCAGAAGCATTCACGTACCTGGGAAGTATCATTGATGAACAAGCAGGATCTGATGCAGATCTAAAGGCGAGGATTGGCAATGCAAGGGTAGCATTTCTACAATTGAAGAACATATGAAACTCAAAACAACTCCGTCATTTAATTTCAAAGTGAGAATCTTCAATACGAACGTCAAGACAGTCCTACTGTACGGAGCTGAAACGTTGAGAACTACTACATCCATCATCAGGAGGGTACAACTATTTAGTAAGAGTTGCTTTCATAAAACACTCAACTTTCACCGGCCGAATACCATCAGCAACAGCGTTTTATGGAAGAGGACAAACTAGCTTCCAGCTGAAGAGAAAATTAGGAAAAGACGTTGGAAGTGGATCGGACATACATAGGAGAAAATACTAGACTGCATCACGAGGCAATCCCTAACTTGGAATGGTGAAGGGAAGCGGAAAAGTGGAAGGCCAAAGAACACATTACGCCGAGAGATTGAAGCGGATATGAAAAGAATAAATAACAACTGGAAAGAAACTGGAAGGATTTCTCAGGACAGGGTTGA]

[+] EMBL CD092848             [GATGGAAAAACTCTGGAAGATGCAGAAGCATTCACGTACCTGGGAAGTATCATTGATGAACAAGCAGGATCTGATGCAGATCTAAAGGCGAGGATTGGCAATGCAAGGGTAGCATTTCTACAATTGAAGAACATATGAAACTCAAAACAACTCCGTCATTTAATTTCAAAGTGAGAATCTTCAATACGAACGTCAAGACAGTCCTACTGTACGGAGCTGAAACGTTGAGAACTACTACATCCATCATCAGGAGGGTACAACTATTTAGTAAGAGTTGCTTTCATAAAACACTCAACTTTCACCGGCCGAATACCATCAGCAACAGCGTTTTATGGAAGAGGACAAACTAGCTTCCAGCTGAAGAGAAAATTAGGAAAAGACGTTGGAAGTGGATCGGACATACATAGGAGAAAATACTAGACTGCATCACGAGGCAATCCCTAACTTGGAATGGTGAAGGGAAGCGGAAAAGTGGAAGGCCAAAGAACACATTACGCCGAGAGATTGAAGCGGATATGAAAAGAATAAATAACAACTGGAAAGAAACTGGAAGGATTTCTCAGGACAGGGTTGA]




>consensus_4294#0
GATGGAAAAACTCTGGAAGATGCAGAAGCATTCACGTACCTGGGAAGTATCATTGATGAA
CAAGCAGGATCTGATGCAGATCTAAAGGCGAGGATTGGCAATGCAAGGGTAGCATTTCTA
CAATTGAAGAACATATGAAACTCAAAACAACTCCGTCATTTAATTTCAAAGTGAGAATCT
TCAATACGAACGTCAAGACAGTCCTACTGTACGGAGCTGAAACGTTGAGAACTACTACAT
CCATCATCAGGAGGGTACAACTATTTAGTAAGAGTTGCTTTCATAAAACACTCAACTTTC
ACCGGCCGAATACCATCAGCAACAGCGTTTTATGGAAGAGGACAAACTAGCTTCCAGCTG
AAGAGAAAATTAGGAAAAGACGTTGGAAGTGGATCGGACATACATAGGAGAAAATACTAG
ACTGCATCACGAGGCAATCCCTAACTTGGAATGGTGAAGGGAAGCGGAAAAGTGGAAGGC
CAAAGAACACATTACGCCGAGAGATTGAAGCGGATATGAAAAGAATAAATAACAACTGGA
AAGAAACTGGAAGGATTTCTCAGGACAGGGTTGA

consensusID : consensus_4294#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 492
fasta sequence

                              [TGTGTAAGCTTTGACGGTTGCTCCTTAGTCACTGTGGATTTAGATGACTTGAAACCAGCAATTTCATCATTATATAGCCTTTCTTTCTCCTTTTTTCTCTCTAATTGCTCCAGACGCTTTGAGTCTTTTTCTTCTTTCCGTTGCTGTTTTCTATTCAAATGCTTGTCATCATCTCTCCAATACTCATCCTCAGCCTTTTTTAGTGTGATTTCTCGCTCTTCTCGCTTCTTTTCGGCTCGTCTTTCTCGAGCCTCCAATGATTTCGGACATGTCCCGAGTTTCTTCGGCATATAGTGGATCCTTCAGCACAGTAATCTGGGAACACAAAAGGGAATGAGACCAGCTGTCTTTTATATTTGATTTATCAAGAAGTAATCAGATGAATATACATTGAGATCTGTTCGTGGTTAAATATCTAGTAATAATACAAGCTGACTACAGCTAAAAACAACTTAACCTGAATTTAACGTCAAGAATCAGAGTCGTAAACTG]

[+] EMBL CD095361             [TGTGTAAGCTTTGACGGTTGCTCCTTAGTCACTGTGGATTTAGATGACTTGAAACCAGCAATTTCATCATTATATAGCCTTTCTTTCTCCTTTTTTCTCTCTAATTGCTCCAGACGCTTTGAGTCTTTTTCTTCTTTCCGTTGCTGTTTTCTATTCAAATGCTTGTCATCATCTCTCCAATACTCATCCTCAGCCTTTTTTAGTGTGATTTCTCGCTCTTCTCGCTTCTTTTCGGCTCGTCTTTCTCGAGCCTCCAATGATTTCGGACATGTCCCGAGTTTCTTCGGCATATAGTGGATCCTTCAGCACAGTAATCTGGGAACACAAAAGGGAATGAGACCAGCTGTCTTTTATATTTGATTTATCAAGAAGTAATCAGATGAATATACATTGAGATCTGTTCGTGGTTAAATATCTAGTAATAATACAAGCTGACTACAGCTAAAAACAACTTAACCTGAATTTAACGTCAAGAATCAGAGTCGTAAACTG]




>consensus_4294#1
TGTGTAAGCTTTGACGGTTGCTCCTTAGTCACTGTGGATTTAGATGACTTGAAACCAGCA
ATTTCATCATTATATAGCCTTTCTTTCTCCTTTTTTCTCTCTAATTGCTCCAGACGCTTT
GAGTCTTTTTCTTCTTTCCGTTGCTGTTTTCTATTCAAATGCTTGTCATCATCTCTCCAA
TACTCATCCTCAGCCTTTTTTAGTGTGATTTCTCGCTCTTCTCGCTTCTTTTCGGCTCGT
CTTTCTCGAGCCTCCAATGATTTCGGACATGTCCCGAGTTTCTTCGGCATATAGTGGATC
CTTCAGCACAGTAATCTGGGAACACAAAAGGGAATGAGACCAGCTGTCTTTTATATTTGA
TTTATCAAGAAGTAATCAGATGAATATACATTGAGATCTGTTCGTGGTTAAATATCTAGT
AATAATACAAGCTGACTACAGCTAAAAACAACTTAACCTGAATTTAACGTCAAGAATCAG
AGTCGTAAACTG

consensusID : consensus_4294#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 290
fasta sequence

                              [GCCAGAATTCGGCACGAGGGATATCTCAATGTATATTCATCTGATTACTTCTTGATAAATCAAATATAAAAGACAGCTGGTCTCATTCCCTTTTGTATTCCCAGATTACTAGGATCCACTATATGCCGAAGAAACTCGGGACATGTCCGAAATCATTGGAGGCTCGAGAAAGACGAGCCGAAAAGAAGCGAGAAGAGCGAGAAATCACACTAAAAAAGGCTGAGGATGAGTATTGGAGAGATGATGACAAGCATTTGAATAGAAACAGCAACGGGAAGAAGAAAAGACTC]

[+] EMBL CD077449             [GCCAGAATTCGGCACGAGGGATATCTCAATGTATATTCATCTGATTACTTCTTGATAAATCAAATATAAAAGACAGCTGGTCTCATTCCCTTTTGTATTCCCAGATTACTAGGATCCACTATATGCCGAAGAAACTCGGGACATGTCCGAAATCATTGGAGGCTCGAGAAAGACGAGCCGAAAAGAAGCGAGAAGAGCGAGAAATCACACTAAAAAAGGCTGAGGATGAGTATTGGAGAGATGATGACAAGCATTTGAATAGAAACAGCAACGGGAAGAAGAAAAGACTC]




>consensus_4294#2
GCCAGAATTCGGCACGAGGGATATCTCAATGTATATTCATCTGATTACTTCTTGATAAAT
CAAATATAAAAGACAGCTGGTCTCATTCCCTTTTGTATTCCCAGATTACTAGGATCCACT
ATATGCCGAAGAAACTCGGGACATGTCCGAAATCATTGGAGGCTCGAGAAAGACGAGCCG
AAAAGAAGCGAGAAGAGCGAGAAATCACACTAAAAAAGGCTGAGGATGAGTATTGGAGAG
ATGATGACAAGCATTTGAATAGAAACAGCAACGGGAAGAAGAAAAGACTC

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_4294#0      GATGGAAAAACTCTGGAAGATGCAGAAGCATTCACGTACCTGGGAAGTATCATTGATGAA 60
consensus_4294#2      ------------------------------------------------------------
consensus_4294#1      --------------------------------TGTGTAAGCTTTGACGGTTGCTCCTTAG 28
                                                                                  

consensus_4294#0      CAAGCAGGATCTGATGCAGATCTAAAGGCGAGGATTGGCAATGCAAGGGTAGCATTTCTA 120
consensus_4294#2      --------------------------------------------------------GCCA 4
consensus_4294#1      TCACTGTGGATTTAGATGACTTGAAACCAGCAATTTCATCATTATATAGCCTTTCTTTCT 88
                                                                                  

consensus_4294#0      CAATTGAAGAACATATGAAACTCAAAACAACTCCGTCATTTAATT-TCAAAGTGAGAATC 179
consensus_4294#2      GAATTCGGCACGAGGGATATCTCAATGTATATTCATCTGATTACT-TCTTGATAAATCAA 63
consensus_4294#1      CCTTTTTTCTCTCTAATTGCTCCAGACGCTTTGAGTCTTTTTCTTCTTTCCGTTGCTGTT 148
                         **                 **       *   **   *   * *     *       

consensus_4294#0      TTCAATACGAACGTCAAGACAGTCCTACTGTACGGAGCTGAAACGTTGAGAACTACTACA 239
consensus_4294#2      ATATAAAAGACAGCTGGTCTCATTCCCTTTTGTATTCCCAGATTACTAGGATCCACTATA 123
consensus_4294#1      TTCTATTCAAATGCT--TGTCATCAT-CTCTCCAATACTCA--TCCTCAGCCTTTTTTAG 203
                       *  *    *  *         *     * *      *        *  *      *   

consensus_4294#0      TCCATCATCAGGAGGGTACAACTATTTAGTAAGAGTTGCTTTCATAAAACACTCAACTTT 299
consensus_4294#2      TGC----CGAAGAAACTCGGGACATGTCCGAAA--------TCATTGGAGGCTCGAGAAA 171
consensus_4294#1      TGTGATTTCTCGCTCTTCTCGCTTCTTTTCGGC--TCGTCTTTCTCGAGCCTCCAATGAT 261
                      *          *    *         *              *  *        * *    

consensus_4294#0      CACCGGCCGAATACCATCAGCAACAGCGTTTTATGGAAG--AGGACAAACTAGCTTCCAG 357
consensus_4294#2      GACGAGCCGAAAAGAAGCGAGAAGAGCGAGAAATCACAC--TAAAAAAGGCTGAGGATGA 229
consensus_4294#1      TTCGGACATGTCCCGAGTTTCTTCGGCATATAGTGGATCCTTCAGCACAGTAATCTGGGA 321
                        *   *        *         **      *            *             

consensus_4294#0      CTGAAGAGAAAATTAGGAAAAGACGTTGGAAGTGGATCGGACATACATAGGAGAAAATAC 417
consensus_4294#2      GTATTGGAGAGATGATGACAAG-CATTTGAATAGAAACAGCAACGGGAAGAAGAAAAGAC 288
consensus_4294#1      ACACAAAAGGGAATGAGACCAGCTGTCT--TTTATATTTGATTTATCAAGAAGTAATCAG 379
                                 *    **  **   *         *   *        ** ** **  * 

consensus_4294#0      TAGACTGCATCACGAGGCAATCCCTAACTTGGAATGGTGAAGGGAAGCGGAAAAGTGGAA 477
consensus_4294#2      TC---------------------------------------------------------- 290
consensus_4294#1      ATGAATATACATTGAGATCTGTTCGTGGTTA-AATATCTAGTAATAATACAAGCTGACTA 438
                                                                                  

consensus_4294#0      GGCCAAAGAACACATTACGCCGAGAGATTGAAGCGGATATGAAAAGAATAAATAACAACT 537
consensus_4294#2      ------------------------------------------------------------
consensus_4294#1      CAGCTAAAAACAACTTA-ACCTGAATTTAACGTCAAGAATCAGAGTCGTAAACTG----- 492
                                                                                  

consensus_4294#0      GGAAAGAAACTGGAAGGATTTCTCAGGACAGGGTTGA 574
consensus_4294#2      -------------------------------------
consensus_4294#1      -------------------------------------