cluster # 4296

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Schistosoma mansoni
cluster # 4296 cluster # 4296 Sequences # 3 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_4296#0 length = 633 sequences # 2

consensus_4296#1 length = 429 sequences # 1

consensusID : consensus_4296#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 633
fasta sequence

                              [NNNNNNNNNNAACCCAAGGAAGATANGTGTGAATAGAGCGAAGTTGTCCGAATTATTACGTTTCTATTCTTCAGCTTCTGGTGATGAAATGATTAGCCTGAAGGACTATGTGTCACGTATGAAACCTGAACAGCAGGATATTTACTACATAACAGGTGAATCAAAGCAAGCAGTGATGAACTCACCATTTGCTGAGAAACTTACTCAACGTGGATTCGAGGTGTTGTACATGGTCGATCCGATAGATGAGTATGCAGTGACCCACCTACGGCAATATGAAAATAAAAAGTTAGTTTGCGTTACTAAGGATGGTCTTCAACTGCCTGAGAGTGAGGAAGAGAAAAAACAGTTCGAAGAGCTGAAGGCGTCGTACGAAACACTTTGCAAAGAGATTCAGCAGATACTTGGTAAGAACGTTGAAAAGGTTAGTATTTCGAATCGACTTACAAATTCCCCATGTTGCGTTGTAACTTCAGAGTTCGGATGGTCTGCTAACATGGAGAGGATCATGAAGGCACAAGCACTCCGAGACTCCAGCACTATGGGCTACATGGCAGCTAAGAAACAGTTAGAGCTGAATCCATATCATCCCTTGATGAGTGCATAAGGTCGGCAAACACATACAGCCACTTA]

[-] EMBL CD154928             [NNNNNNNNNNAACCCAAGGAAGATANGTGTGAATAGAGCGAAGTTGTCCGAATTATTACGTTTCTATTCTTCAGCTTCTGGTGATGAAATGATTAGCCTGAAGGACTATGTGTCACGTATGAAACCTGAACAGCAGGATATTTACTACATAACAGGTGAATCAAAGCAAGCAGTGATGAACTCACCATTTGCTGAGAAACTTACTCAACGTGGATTCGAGGTGTTGTACATGGTCGATCCGATAGATGAGTATGCAGTGACCCACCTACGGCAATATGAAAATAAAAAGTTAGTTTGCGTTACTAAGGATGGTCTTCAACTGCCTGAGAGTGAGGAAGAGAAAAAACAGTTCGAAGAGCTGAAGGCGTCGTACGAAACACTTTGCAAAGAGATT                                                                                                                                                                                                                                               ]
[+] EMBL CD162146             [                                                                                                                                                                                                                                                                                                                     TGGTCTTCAACTGCCTGAGGGTGAGGAAGAGAAAAAACAGTTCGAAGAGCTGAAGGCGTCGTACGAAACACTTTGCAAAGAGATTCAGCAGATACTTGGTAAGAACGTTGAAAAGGTTAGTATTTCGAATCGACTTACAAATTCCCCATGTTGCGTTGTAACTTCAGAGTTCGGATGGTCTGCTAACATGGAGAGGATCATGAAGGCACAAGCACTCCGAGACTCCAGCACTATGGGCTACATGGCAGCTAAGAAACAGTTAGAGCTGAATCCATATCATCCCTTGATGAGTGCATAAGGTCGGCAAACACATACAGCCACTTA]




>consensus_4296#0
NNNNNNNNNNAACCCAAGGAAGATANGTGTGAATAGAGCGAAGTTGTCCGAATTATTACG
TTTCTATTCTTCAGCTTCTGGTGATGAAATGATTAGCCTGAAGGACTATGTGTCACGTAT
GAAACCTGAACAGCAGGATATTTACTACATAACAGGTGAATCAAAGCAAGCAGTGATGAA
CTCACCATTTGCTGAGAAACTTACTCAACGTGGATTCGAGGTGTTGTACATGGTCGATCC
GATAGATGAGTATGCAGTGACCCACCTACGGCAATATGAAAATAAAAAGTTAGTTTGCGT
TACTAAGGATGGTCTTCAACTGCCTGAGAGTGAGGAAGAGAAAAAACAGTTCGAAGAGCT
GAAGGCGTCGTACGAAACACTTTGCAAAGAGATTCAGCAGATACTTGGTAAGAACGTTGA
AAAGGTTAGTATTTCGAATCGACTTACAAATTCCCCATGTTGCGTTGTAACTTCAGAGTT
CGGATGGTCTGCTAACATGGAGAGGATCATGAAGGCACAAGCACTCCGAGACTCCAGCAC
TATGGGCTACATGGCAGCTAAGAAACAGTTAGAGCTGAATCCATATCATCCCTTGATGAG
TGCATAAGGTCGGCAAACACATACAGCCACTTA

consensusID : consensus_4296#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 429
fasta sequence

                              [CTTAAATATAGTAATGATATGGTGAATTGATTCGTTTAATTTTTGAATCATCATATATCTTTCAATGTTCTCATAGTAAAGAAGTAATTCGCTATGCTGTTATATTAAAACTAGTTCAGGAGATCGATCGGTTGTGTTCTACATTTTTTTGTGAACTGACTTATGCCTGTTACTCCTCATGGAGGAGCCTAGACCGCTCACCAGCATTCTCTATCCAACTCTGTCCTGGACAATCCTTTCCAGTTGTTATTCATTCTTTTCATAACTGATTGGGGGTATATTACAGTTAGACAGAAATAGTGTGACCAACAACTAACGTCAAAGTCACACCTCACAGTCAGCATCTAACGTGGATTACTCCTTCATCATATCAAAGTACTATGGATACTATGAAGACCGTATAACTCAAACGACGTTATTACAAAAGGA]

[+] EMBL CD067099             [CTTAAATATAGTAATGATATGGTGAATTGATTCGTTTAATTTTTGAATCATCATATATCTTTCAATGTTCTCATAGTAAAGAAGTAATTCGCTATGCTGTTATATTAAAACTAGTTCAGGAGATCGATCGGTTGTGTTCTACATTTTTTTGTGAACTGACTTATGCCTGTTACTCCTCATGGAGGAGCCTAGACCGCTCACCAGCATTCTCTATCCAACTCTGTCCTGGACAATCCTTTCCAGTTGTTATTCATTCTTTTCATAACTGATTGGGGGTATATTACAGTTAGACAGAAATAGTGTGACCAACAACTAACGTCAAAGTCACACCTCACAGTCAGCATCTAACGTGGATTACTCCTTCATCATATCAAAGTACTATGGATACTATGAAGACCGTATAACTCAAACGACGTTATTACAAAAGGA]




>consensus_4296#1
CTTAAATATAGTAATGATATGGTGAATTGATTCGTTTAATTTTTGAATCATCATATATCT
TTCAATGTTCTCATAGTAAAGAAGTAATTCGCTATGCTGTTATATTAAAACTAGTTCAGG
AGATCGATCGGTTGTGTTCTACATTTTTTTGTGAACTGACTTATGCCTGTTACTCCTCAT
GGAGGAGCCTAGACCGCTCACCAGCATTCTCTATCCAACTCTGTCCTGGACAATCCTTTC
CAGTTGTTATTCATTCTTTTCATAACTGATTGGGGGTATATTACAGTTAGACAGAAATAG
TGTGACCAACAACTAACGTCAAAGTCACACCTCACAGTCAGCATCTAACGTGGATTACTC
CTTCATCATATCAAAGTACTATGGATACTATGAAGACCGTATAACTCAAACGACGTTATT
ACAAAAGGA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_4296#0      NNNNNNNNNNAACCCAAGGAAGATANGTGTGAATAGAGCGAAGT--TGTCCGAATTATTA 58
consensus_4296#1      ------CTTAAATATAGTAATGATATG-GTGAATTGATTCGTTTAATTTTTGAATCATCA 53
                                **   *   * **** * ****** **      *  * *  **** ** *

consensus_4296#0      CGTTTCTATTCTTCAGCTTCTGGTGATGAAATGATTAGCCTGAAGGACTATGTGTCACGT 118
consensus_4296#1      TATATCTTTCAATGTTCTCATAGTAAAGAAGTAATTCGC---------TATGC-TGTTAT 103
                        * *** *   *   **  * ** * *** * *** **         ****  *    *

consensus_4296#0      ATGAAACCTGAACAGCAGGATATTTACTACATAACAGGTGAATCAAAGCAAGCAGTGATG 178
consensus_4296#1      ATTAAAACTAGTT--CAGGAGAT-------------------------CGATCGGTTGTG 136
                      ** *** **      ***** **                         * * * **  **

consensus_4296#0      AACTCACCATTTGCTGAGAAACTTACTCAACGTGGATTCGAGGTGTTGTACATGGTCGAT 238
consensus_4296#1      --TTCTACATTTTTTTGTGAACTGACTTA-------TGCCTGTTACTCCTCATGGAGGAG 187
                         **  *****  *    **** *** *       * *  * *  *   *****  ** 

consensus_4296#0      CCGATAGATGAGTATGCAGTGACCCACCTACGGCAATATGAAAATAAAAAGTTAGTTTGC 298
consensus_4296#1      CC--TAGACCGCTCACCAGCATTCTCTATCCAACTCTGTC---CTGGACAATCCTTTCCA 242
                      **  ****    *   ***    *    * *  *  * *     *  * * *   **   

consensus_4296#0      GTTACTAAGGATGGTCTTCA--ACTGCCTGAGAGTGAGGAAGAGAAAAAACAGTTCGAAG 356
consensus_4296#1      GTTGTTATTCATTCTTTTCATAACTGATTGGGGGT---------ATATTACAGTTAGACA 293
                      ***  **   **  * ****  ****  ** * **         * *  ****** **  

consensus_4296#0      AGCTGAAGGCGTCGTACGAAACACTTTGCAAAGAGATTCAGCAGATACTTGGTAAGAACG 416
consensus_4296#1      GAAATAGTGTGACCAACAACTAACGT--CAAAGTCACACCTCACA------GTCAGCATC 345
                           *  * * *  ** *   ** *  *****  *  *  ** *      ** ** *  

consensus_4296#0      TTGAAAAGGTTAGTATTTCGAATCGACTTACAAATTCCCCATGTTGCGTTGTAACTTCAG 476
consensus_4296#1      TAACGTGGATTACTCCTTC--ATCATATCA-AAGTACTATGGATACTATGAAGACCGTAT 402
                      *      * *** *  ***  ***   * * ** * *      *    *    **   * 

consensus_4296#0      AGTTCGGATGGTCTGCTAACATGGAGAGGATCATGAAGGCACAAGCACTCCGAGACTCCA 536
consensus_4296#1      AACTCAAACGACGTTATTACAAAAGGA--------------------------------- 429
                      *  **  * *   *  * ***    **                                 

consensus_4296#0      GCACTATGGGCTACATGGCAGCTAAGAAACAGTTAGAGCTGAATCCATATCATCCCTTGA 596
consensus_4296#1      ------------------------------------------------------------
                                                                                  

consensus_4296#0      TGAGTGCATAAGGTCGGCAAACACATACAGCCACTTA 633
consensus_4296#1      -------------------------------------