Home
Who am I
Technology
EST Assembly
Contact

These datas are free for academic use only, please contact me for any other use.

Schistosoma mansoni
cluster # 4297 cluster # 4297       Sequences # 3       consensus # 2


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_4297#0 length = 594 sequences # 2  
consensus_4297#1 length = 518 sequences # 1  

consensusID : consensus_4297#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 594
fasta sequence
                              [GCATGGT-TCTCGTAACCAGTGGTTAGAGAATTTGAAAGACATGGCTCAAAATAGTTTGTAATACCGTAGGTGCATCTGTTCTTCATCTTCTAAAGATTCTGAGCTTCTGAATCTCTCATAACCTTTTTATTTCAATAATTTTTATTTTATTGAATCGAATCTTCGATATCTAATCTTTTTTATCACAACATATACTGTTAATACCTCAACTATGAAATTTGCTCTAACAATATAATTTCGATGTACTAATGGACCAAGAAACTTTAACAGACGTAGATACATACAGGGTTATACGTCGAATTTAACTGACTGAGAACTAGGGTATGAGAAAACGTTCATAAATTTCATATGAAGTCTCTTCCCCAAATGTAGGCACTTATATAACCACTTCAAATAAACAGAATAATAAATAAAACGTACACATAGAAATTAAGCTCGATATACACTATTAAATGGAAGGTTTTTTGATTAATGAACATGACACAGATACATAAATCGTTAAACAAAAGTGATCGATGTTAACATAAACAATTCAGTTTGGAAATCGAAATGAGAGAAGTTTATTAAAAGCTATCTGTGAGTATTAAGTCAGTT]

[+] EMBL CD084530             [GCATGGT TCTCGTAACCAGTGGTTAGAGAATTTGAAAGACATGGCTCAAAATAGTTTGTAATACCGTAGGTGCATCTGTTCTTCATCTTCTAAAGATTCTGAGCTTCTGAATCTCTCATAACCTTTTTATTTCAATAATTTTTATTTTATTGAATCGAATCTTCGATATCTAATCTTTTTTATCACAACATATACTGTTAATACCTCAACTATGAAATTTGCTCTAACAATATAATTTCGATGTACTAATGGACCAAGAAACTTTAACAGACGTAGATACATACAGGGTTATACGTCGAATTTAACTGACTGAGAACTAGGGTATGAGAAAACGTTCATAAATTTCATATGAAGTCTCTTCCCCAAATGTAGGCACTTATATAACCACTTCAAATAAACAGAATAATAAATAAAACGTACACATAGAAATTAAGCTCGATATACACTATTAAATGGAAGGTTTTTTGATTAATGAACATGACACAGATACATAAATCGTTAAACAAAAGTGATCGATGTTAACATAAACAATTCAGTTTGGAAATCGAAATGAGAGAAGTTTATTAAAAGCTATCTGTGAGTATTAAGTCAGTT]
[+] EMBL CD084539             [GCATGGTCTCTCGTAACCAGTGGTTAGAGAATTTGAAAGACATGGCTCAAAATAGTTTGTAATACCGTAGGTGCATCTGTTCTTCATCTTCTAAAGATTCTGAGCTTCTGAATCTCTCATAACCTTTTTATTTCAATAATTTTTATTTTATTGAATCGAATCTTCGATATCTAATCTTTTTTATCACAACATATACTGTTAATACCTCAACTATGAAATTTGCTCTAACAATATAATTTCGATGTACTAATGGACCAAGAAACTTTAACAGACGTAGATACATACAGGGTTATACGTCGAATTTAACTGACTGAGAACTAGGGTATGAGAAAACGTTCATAAATTTCATATGAAGTCTCTTCCCCAAATGTAGGCACTTATATAACCACTTCAAATAAACAGAATAATAAATAAAACGTACACATAGAAATTAAGCTCGATATACACTATTAAATGGAAGGTTTTTTGATTAATGAACATGACCCAGATCCATAAACCGTT                                                                                              ]


>consensus_4297#0 GCATGGTTCTCGTAACCAGTGGTTAGAGAATTTGAAAGACATGGCTCAAAATAGTTTGTA ATACCGTAGGTGCATCTGTTCTTCATCTTCTAAAGATTCTGAGCTTCTGAATCTCTCATA ACCTTTTTATTTCAATAATTTTTATTTTATTGAATCGAATCTTCGATATCTAATCTTTTT TATCACAACATATACTGTTAATACCTCAACTATGAAATTTGCTCTAACAATATAATTTCG ATGTACTAATGGACCAAGAAACTTTAACAGACGTAGATACATACAGGGTTATACGTCGAA TTTAACTGACTGAGAACTAGGGTATGAGAAAACGTTCATAAATTTCATATGAAGTCTCTT CCCCAAATGTAGGCACTTATATAACCACTTCAAATAAACAGAATAATAAATAAAACGTAC ACATAGAAATTAAGCTCGATATACACTATTAAATGGAAGGTTTTTTGATTAATGAACATG ACACAGATACATAAATCGTTAAACAAAAGTGATCGATGTTAACATAAACAATTCAGTTTG GAAATCGAAATGAGAGAAGTTTATTAAAAGCTATCTGTGAGTATTAAGTCAGTT



consensusID : consensus_4297#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 518
fasta sequence
                              [GCATGGTTCTCGTAACCAGTGGTTAGAGAATTTGAAACACATGGCTCAAAATAGTTTGTAATACCGTAGGTGCATCTGTTCTTCATCTTCTAAAGATTCTGAGCTTCTGAATCTCTCATAACCTTTTTATTTCAATAATTTTTATTTTATTGAATCGAATCTTCGATATCTAATCTTTTTTATCACAACATATACTGTTAATACCTCAACTATGAAATTTGCTCTAACAATATAATTTCGCTGTACTAATGGACCAAGAAACTTTAACAGACGTAGATACATACAGGGTTATACGTCGAATTTAACTGACTGAGAACTAGGGTATGACAAAACGCTCATAAATTTCATATGAAGTCTCTTCCCCAAATGTAGGCACTTATATAACCACTTTAAATAAATAAATAAAAATAAATCACACCCAAAGAGTAGGAAAGTAGCCTCACTGGTAACGTTGAATAGGAATGGCACCATGCTCTACAGTCTGACAAATGTAAGGAACTGAATTGCATTTTAGTTGG]

[+] EMBL CD084625             [GCATGGTTCTCGTAACCAGTGGTTAGAGAATTTGAAACACATGGCTCAAAATAGTTTGTAATACCGTAGGTGCATCTGTTCTTCATCTTCTAAAGATTCTGAGCTTCTGAATCTCTCATAACCTTTTTATTTCAATAATTTTTATTTTATTGAATCGAATCTTCGATATCTAATCTTTTTTATCACAACATATACTGTTAATACCTCAACTATGAAATTTGCTCTAACAATATAATTTCGCTGTACTAATGGACCAAGAAACTTTAACAGACGTAGATACATACAGGGTTATACGTCGAATTTAACTGACTGAGAACTAGGGTATGACAAAACGCTCATAAATTTCATATGAAGTCTCTTCCCCAAATGTAGGCACTTATATAACCACTTTAAATAAATAAATAAAAATAAATCACACCCAAAGAGTAGGAAAGTAGCCTCACTGGTAACGTTGAATAGGAATGGCACCATGCTCTACAGTCTGACAAATGTAAGGAACTGAATTGCATTTTAGTTGG]


>consensus_4297#1 GCATGGTTCTCGTAACCAGTGGTTAGAGAATTTGAAACACATGGCTCAAAATAGTTTGTA ATACCGTAGGTGCATCTGTTCTTCATCTTCTAAAGATTCTGAGCTTCTGAATCTCTCATA ACCTTTTTATTTCAATAATTTTTATTTTATTGAATCGAATCTTCGATATCTAATCTTTTT TATCACAACATATACTGTTAATACCTCAACTATGAAATTTGCTCTAACAATATAATTTCG CTGTACTAATGGACCAAGAAACTTTAACAGACGTAGATACATACAGGGTTATACGTCGAA TTTAACTGACTGAGAACTAGGGTATGACAAAACGCTCATAAATTTCATATGAAGTCTCTT CCCCAAATGTAGGCACTTATATAACCACTTTAAATAAATAAATAAAAATAAATCACACCC AAAGAGTAGGAAAGTAGCCTCACTGGTAACGTTGAATAGGAATGGCACCATGCTCTACAG TCTGACAAATGTAAGGAACTGAATTGCATTTTAGTTGG



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_4297#0      GCATGGTTCTCGTAACCAGTGGTTAGAGAATTTGAAAGACATGGCTCAAAATAGTTTGTA 60
consensus_4297#1      GCATGGTTCTCGTAACCAGTGGTTAGAGAATTTGAAACACATGGCTCAAAATAGTTTGTA 60
                      ************************************* **********************

consensus_4297#0      ATACCGTAGGTGCATCTGTTCTTCATCTTCTAAAGATTCTGAGCTTCTGAATCTCTCATA 120
consensus_4297#1      ATACCGTAGGTGCATCTGTTCTTCATCTTCTAAAGATTCTGAGCTTCTGAATCTCTCATA 120
                      ************************************************************

consensus_4297#0      ACCTTTTTATTTCAATAATTTTTATTTTATTGAATCGAATCTTCGATATCTAATCTTTTT 180
consensus_4297#1      ACCTTTTTATTTCAATAATTTTTATTTTATTGAATCGAATCTTCGATATCTAATCTTTTT 180
                      ************************************************************

consensus_4297#0      TATCACAACATATACTGTTAATACCTCAACTATGAAATTTGCTCTAACAATATAATTTCG 240
consensus_4297#1      TATCACAACATATACTGTTAATACCTCAACTATGAAATTTGCTCTAACAATATAATTTCG 240
                      ************************************************************

consensus_4297#0      ATGTACTAATGGACCAAGAAACTTTAACAGACGTAGATACATACAGGGTTATACGTCGAA 300
consensus_4297#1      CTGTACTAATGGACCAAGAAACTTTAACAGACGTAGATACATACAGGGTTATACGTCGAA 300
                       ***********************************************************

consensus_4297#0      TTTAACTGACTGAGAACTAGGGTATGAGAAAACGTTCATAAATTTCATATGAAGTCTCTT 360
consensus_4297#1      TTTAACTGACTGAGAACTAGGGTATGACAAAACGCTCATAAATTTCATATGAAGTCTCTT 360
                      *************************** ****** *************************

consensus_4297#0      CCCCAAATGTAGGCACTTATATAACCACTTCAAATAAACAGAATAATAAATAAAACGTAC 420
consensus_4297#1      CCCCAAATGTAGGCACTTATATAACCACTTTAAATAAATA-AATAA-AAATAAATCACAC 418
                      ****************************** ******* * ***** ******* *  **

consensus_4297#0      ACATAGAAATTAAGCTCGATATACACTATTAAATGGAAGGTTTTTTGATTAATGAACATG 480
consensus_4297#1      CCAAAGAGTAGGAAAGTAGCCT-CACTGGTAA-------------CGTTGAATAGGAATG 464
                       ** ***     *        * ****  ***              * * ***    ***

consensus_4297#0      ACACAGATACATAAATCGTTAAACAAAAGTGATCGATGTTAACATAAACAATTCAGTTTG 540
consensus_4297#1      GCACC-ATGC-TCTACAGTCTGACAAATGTAA--GGAACTGAATTG--CATTTTAGTTGG 518
                       ***  ** * *  *  **   ***** ** *  *    * *  *   ** ** **** *

consensus_4297#0      GAAATCGAAATGAGAGAAGTTTATTAAAAGCTATCTGTGAGTATTAAGTCAGTT 594
consensus_4297#1      ------------------------------------------------------
                                                                            




Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner    (hubert.wassner@noos.fr)