These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_4303#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 604 fasta sequence [CTCGAGCCAANAATTCGGCACGAGGGGAAAAAAGAAAAATCGTCGCTGCAAAATAATCTGTATTATATTGGTTGTTGTTATCGCCACATTGATCCTGATCTCATTAGCTTCGGCAATCGGTTTAACACGATGATCAACAGTTTATTTAGTATATAAGGATGAAGTTCGAAAACAACGAATTTCGGTTTGCCAAATTCCATCATCGTACTCTCAATTCAAATAAGTCAACGATTAATTACAATAATAATATACATGATGCGTGTGCATACAATCATATCTCATTTACTTCTATCTTGTTTACTGTGTACAGAAAAGATGGGAAAATGATGCGCCACACCAATTGTTCTTTTAATTTTTACTCATTTAAGATATTTACTCTTTTGTACAAAACCAATTACGATAATCGCATTGATTATCACAATAAATACTTTTATCATTATCATTTTTATTGTAGCTATCTTTTATAGTCAAAATTACTTCATTTTTAAACCGTACGCTACTGCTTGGCTGAAATTGTTCTGCTTGTTGAATATATATATATATATATATATATATATATATATATATATATAATTTAGTCGCTT-ATCAATAAAAAAATATATGT] [+] EMBL CD082725 [CTCGAGCCAANAATTCGGCACGAGGGGAAAAAAGAAAAATCGTCGCTGCAAAATAATCTGTATTATATTGGTTGTTGTTATCGCCACATTGATCCTGATCTCATTAGCTTCGGCAATCGGTTTAACACGATGATCAACAGTTTATTTAGTATATAAGGATGAAGTTCGAAAACAACGAATTTCGGTTTGCCAAATTCCATCATCGTACTCTCAATTCAAATAAGTCAACGATTAATTACAATAATAATATACATGATGCGTGTGCATACAATCATATCTCATTTACTTCTATCTTGTTTACTGTGTACAGAAAAGATGGGAAAATGATGCGCCACACCAATTGTTCTTTTAATTTTTACTCATTTAAGATATTTACTCTTTTGTACAAAACCAATTACGATAATCGCATTGATTATCACAATAAATACTTTTATCATTATCATTTTTATTGTAGCTATCTTTTATAGTCAAAATTACTTCATTTTTAAACCGTACGCTACTGCTTGGCTGAAATTGTTCTGCTTGTTGAATATATATATATATATATATATATATATATATATATATATATAATTTAGTCGCTT ATCAATAAAAAAATATATG ] [-] EMBL CD076316 [ TATATTGGTTGTTGTTATCGCCACATTGATCCTGATCTCATTAGCTTCGGCAATCGGTTTAACACGATGATCAACAGTTTATTTAGTATATAAGGATGAAGTTCGAAAACAACGAATTTCGGTTTGCCAAATTCCATCATCGTACTCTCAATTCAAATAAGTCAACGATTAATTACAATAATAATATACATGATGCGTGTGCATACAATCATATCTCATTTACTTCTATCTTGTTTACTGTGTACAGAAAAGATGGGAAAATGATGCGCCACACCAATTGTTCTTTTAATTTTTACTCATTTAAGATATTTACTCTTTTGTACAAAACCAATTACGATAATCGCATTGATTATCCCAATAAATACTTTTATCATTATCATTTTTATTGTAGCTATCTTTTATAGTCAAAATTACTTCATTTTTAAACCGTACGCTACTGCTTGGCTGAAATTGTTCTGCTTGTTGAATATATATATATATATATATATATATATATATATATATATATAATTTAGTCGCTTAATCAATAAAAAAATATATGT] consensusID : consensus_4303#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 571 fasta sequence [TTATACGGCTCGAGAAAAGTATCCAGGAGATGAAAGAGCTATTCTTCAATGTCGCTCTTCTAGTTGACCAACAGGGTGATTTAATCGATCAAGTTGAATACAATTTGAACAAGGCATCCGACTGTGTTGTAAATTCAAAGCGTACCCTTTCGTCAGCCGTAATTAGAAAAAAGAAAAATCGTCGCTGCAAAATAATCTGTATTATATTGGTTGTTGTTATCGCCACATTGATCCTGATCTCATTAGCTTCGGCAATCGGTTTAACACGATGATCAACAGTTTATTTAGTATATAAGGATGAAGTTCGAAAACAACGAATTTCGGTTTGCCAAATTCCATCATCGTACTCTCAATTCAAATAAGTCAACGATTAATTACAATAATAATATACATGATGCGTGTGCATACAATCATATCTCATTTACTTCTATCTTGTTTACTGTGTACAGAAAAGATGGGAAAATGATGCGCCACACCAATTGTTCTTTTAATTTTTACTCATTTAAGATATTTACTCTTTTGTACAAAACCAATTACGATAATCGCATTGATTATCACAATAAATACTTTT] [-] EMBL CD075639 [TTATACGGCTCGAGAAAAGTATCCAGGAGATGAAAGAGCTATTCTTCAATGTCGCTCTTCTAGTTGACCAACAGGGTGATTTAATCGATCAAGTTGAATACAATTTGAACAAGGCATCCGACTGTGTTGTAAATTCAAAGCGTACCCTTTCGTCAGCCGTAATTAGAAAAAAGAAAAATCGTCGCTGCAAAATAATCTGTATTATATTGGTTGTTGTTATCGCCACATTGATCCTGATCTCATTAGCTTCGGCAATCGGTTTAACACGATGATCAACAGTTTATTTAGTATATAAGGATGAAGTTCGAAAACAACGAATTTCGGTTTGCCAAATTCCATCATCGTACTCTCAATTCAAATAAGTCAACGATTAATTACAATAATAATATACATGATGCGTGTGCATACAATCATATCTCATTTACTTCTATCTTGTTTACTGTGTACAGAAAAGATGGGAAAATGATGCGCCACACCAATTGTTCTTTTAATTTTTACTCATTTAAGATATTTACTCTTTTGTACAAAACCAATTACGATAATCGCATTGATTATCACAATAAATACTTTT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_4303#0 ------------------------------------------------------------ consensus_4303#1 TTATACGGCTCGAGAAAAGTATCCAGGAGATGAAAGAGCTATTCTTCAATGTCGCTCTTC 60 consensus_4303#0 ------------------------------------------------------------ consensus_4303#1 TAGTTGACCAACAGGGTGATTTAATCGATCAAGTTGAATACAATTTGAACAAGGCATCCG 120 consensus_4303#0 -------------------CTCGAGCCAANAATTCGGCACGAGGGGAAAAAAGAAAAATC 41 consensus_4303#1 ACTGTGTTGTAAATTCAAAGCGTACCCTTTCGTCAGCCGTAATTAGAAAAAAGAAAAATC 180 * ** * * * * *************** consensus_4303#0 GTCGCTGCAAAATAATCTGTATTATATTGGTTGTTGTTATCGCCACATTGATCCTGATCT 101 consensus_4303#1 GTCGCTGCAAAATAATCTGTATTATATTGGTTGTTGTTATCGCCACATTGATCCTGATCT 240 ************************************************************ consensus_4303#0 CATTAGCTTCGGCAATCGGTTTAACACGATGATCAACAGTTTATTTAGTATATAAGGATG 161 consensus_4303#1 CATTAGCTTCGGCAATCGGTTTAACACGATGATCAACAGTTTATTTAGTATATAAGGATG 300 ************************************************************ consensus_4303#0 AAGTTCGAAAACAACGAATTTCGGTTTGCCAAATTCCATCATCGTACTCTCAATTCAAAT 221 consensus_4303#1 AAGTTCGAAAACAACGAATTTCGGTTTGCCAAATTCCATCATCGTACTCTCAATTCAAAT 360 ************************************************************ consensus_4303#0 AAGTCAACGATTAATTACAATAATAATATACATGATGCGTGTGCATACAATCATATCTCA 281 consensus_4303#1 AAGTCAACGATTAATTACAATAATAATATACATGATGCGTGTGCATACAATCATATCTCA 420 ************************************************************ consensus_4303#0 TTTACTTCTATCTTGTTTACTGTGTACAGAAAAGATGGGAAAATGATGCGCCACACCAAT 341 consensus_4303#1 TTTACTTCTATCTTGTTTACTGTGTACAGAAAAGATGGGAAAATGATGCGCCACACCAAT 480 ************************************************************ consensus_4303#0 TGTTCTTTTAATTTTTACTCATTTAAGATATTTACTCTTTTGTACAAAACCAATTACGAT 401 consensus_4303#1 TGTTCTTTTAATTTTTACTCATTTAAGATATTTACTCTTTTGTACAAAACCAATTACGAT 540 ************************************************************ consensus_4303#0 AATCGCATTGATTATCACAATAAATACTTTTATCATTATCATTTTTATTGTAGCTATCTT 461 consensus_4303#1 AATCGCATTGATTATCACAATAAATACTTTT----------------------------- 571 ******************************* consensus_4303#0 TTATAGTCAAAATTACTTCATTTTTAAACCGTACGCTACTGCTTGGCTGAAATTGTTCTG 521 consensus_4303#1 ------------------------------------------------------------ consensus_4303#0 CTTGTTGAATATATATATATATATATATATATATATATATATATATATATAATTTAGTCG 581 consensus_4303#1 ------------------------------------------------------------ consensus_4303#0 CTTATCAATAAAAAAATATATGT 604 consensus_4303#1 ----------------------- |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||