cluster # 4307

These datas are free for academic use only, please contact me for any other use.

Schistosoma mansoni
cluster # 4307 cluster # 4307 Sequences # 3 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_4307#0 length = 618 sequences # 2

consensus_4307#1 length = 371 sequences # 1

consensusID : consensus_4307#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 618
fasta sequence

                              [CCGCTANCCCTTGTAGGTGATGCCCTCAACTATGGCGGTTGGCTGTCTCGAGAAGCTGCAGCAGCACTAGCTCAAGGGATGCCCCTCCGTGGGCCTGGGTGCATGCCACCGATGGGTTATAATATGGGAGGTCCGTATATGATGGGTGGTGGTGACATGGGGCCGATGGGCGGCGGCATGGGCCCTATGGGAGGAGGAATGGGACCAGGTGGAGGAATGGGTCCCATGGGTGGCGGGCCGGTTCCTGGAGGTCGTGGTAGAGGGCCTCGCTCTGGTGGCGGAATGATGGGTGGAAACGCACCTCTCGCGCAAGGGCAACGAGGAATGATGGGCTCTTCAGGCCCAGCACCCGTCCCCCCTCCCGCCGGTCGTAACAGCTCTATGGGTCCTCCAGGTGGTTATAGTAGTTCTGCGGACGGAGGCTACGGTGGTCAAGGTGGATATGACGGTTCACGAGGATTCGATAACGGAGTGTACGGAAGCTGAAGGATATAATGAATGCCAAACTTTCCGATCCGAAACGCATAATGGGTACCCAAGGATCTCGACGCCGCCCAAGACGAAGTGAAGACCCAGAACGAGATGATGAGGAAGACGAAAACATGATTGACTCCAGAA]

[+] EMBL CD111769             [CCGCTANCCCTTGTAGGTGATGCCCTCAACTATGGCGGTTGGCTGTCTCGAGAAGCTGCAGCAGCACTAGCTCAAGGGATGCCCCTCCGTGGGCCTGGGTGCATGCCACCGATGGGTTATAATATGGGAGGTCCGTATATGATGGGTGGTGGTGACATGGGGCCGATGGGCGGCGGCATGGGCCCTATGGGAGGAGGAATGGGACCAGGTGGAGGAATGGGTCCCATGGGTGGCGGGCCGGTTCCTGGAGGTCGTGGTAGAGGGCCTCGCTCTGGTGGCGGAATGATGGGTGGAAACGCACCTCTCGCGCAAGGGCAACGAGGAATGATGGGCTCTTCAGGCCCAGCACCCGTCCCCCCTCCCGCCGGTCGTAACAGCTCTATGGGTCCTCCAGGTGGTTATAGTAGTTCTGCGGACGGAGG                                                                                                                                                                                                    ]
[+] EMBL CD093794             [                                                                                                                                                                                                                                                                                                                                                                    CCCTCCCGCCGGTCGTAACAGCTCTATGGGTCCTCCAGGTGGTTATAGTAGTTCTGCGGACGGAGGCTACGGTGGTCAAGGTGGATATGACGGTTCACGAGGATTCGATAACGGAGTGTACGGAAGCTGAAGGATATAATGAATGCCAAACTTTCCGATCCGAAACGCATAATGGGTACCCAAGGATCTCGACGCCGCCCAAGACGAAGTGAAGACCCAGAACGAGATGATGAGGAAGACGAAAACATGATTGACTCCAGAA]




>consensus_4307#0
CCGCTANCCCTTGTAGGTGATGCCCTCAACTATGGCGGTTGGCTGTCTCGAGAAGCTGCA
GCAGCACTAGCTCAAGGGATGCCCCTCCGTGGGCCTGGGTGCATGCCACCGATGGGTTAT
AATATGGGAGGTCCGTATATGATGGGTGGTGGTGACATGGGGCCGATGGGCGGCGGCATG
GGCCCTATGGGAGGAGGAATGGGACCAGGTGGAGGAATGGGTCCCATGGGTGGCGGGCCG
GTTCCTGGAGGTCGTGGTAGAGGGCCTCGCTCTGGTGGCGGAATGATGGGTGGAAACGCA
CCTCTCGCGCAAGGGCAACGAGGAATGATGGGCTCTTCAGGCCCAGCACCCGTCCCCCCT
CCCGCCGGTCGTAACAGCTCTATGGGTCCTCCAGGTGGTTATAGTAGTTCTGCGGACGGA
GGCTACGGTGGTCAAGGTGGATATGACGGTTCACGAGGATTCGATAACGGAGTGTACGGA
AGCTGAAGGATATAATGAATGCCAAACTTTCCGATCCGAAACGCATAATGGGTACCCAAG
GATCTCGACGCCGCCCAAGACGAAGTGAAGACCCAGAACGAGATGATGAGGAAGACGAAA
ACATGATTGACTCCAGAA

consensusID : consensus_4307#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 371
fasta sequence

                              [GTAACAGCTCTATGGGTCCTCCAGGTGGTTATAGTAGTTCTGCGGACGGAGGCTACGGTGGTCAAGGTGGATATGACGGTTCAGGAGGATTCGATAACGGAGTGTACGGAGGCATTGACCATACTGGACAGGGAGGATTCAGTGACCCTGGATACGGTGGAGGAATGGGTCCCATGGGTGGCGGGCCGGTTCCTGGAGGTCGTGGTATAGGGCCTCGCTCTGGTGGCGGAATGATGGGTGGAAACGCACCTCTCGCGCAAGGCCAACGAGGAATGATGGGCTCTTCAGGCCCAGCACCCGTCCCCCCTCCTGCCGGTCGTAACAGCTCTATGGGTCCTCCAGGTGGTTATAGTAGTTCTGCGGACGGAGGC]

[+] EMBL CD134178             [GTAACAGCTCTATGGGTCCTCCAGGTGGTTATAGTAGTTCTGCGGACGGAGGCTACGGTGGTCAAGGTGGATATGACGGTTCAGGAGGATTCGATAACGGAGTGTACGGAGGCATTGACCATACTGGACAGGGAGGATTCAGTGACCCTGGATACGGTGGAGGAATGGGTCCCATGGGTGGCGGGCCGGTTCCTGGAGGTCGTGGTATAGGGCCTCGCTCTGGTGGCGGAATGATGGGTGGAAACGCACCTCTCGCGCAAGGCCAACGAGGAATGATGGGCTCTTCAGGCCCAGCACCCGTCCCCCCTCCTGCCGGTCGTAACAGCTCTATGGGTCCTCCAGGTGGTTATAGTAGTTCTGCGGACGGAGGC]




>consensus_4307#1
GTAACAGCTCTATGGGTCCTCCAGGTGGTTATAGTAGTTCTGCGGACGGAGGCTACGGTG
GTCAAGGTGGATATGACGGTTCAGGAGGATTCGATAACGGAGTGTACGGAGGCATTGACC
ATACTGGACAGGGAGGATTCAGTGACCCTGGATACGGTGGAGGAATGGGTCCCATGGGTG
GCGGGCCGGTTCCTGGAGGTCGTGGTATAGGGCCTCGCTCTGGTGGCGGAATGATGGGTG
GAAACGCACCTCTCGCGCAAGGCCAACGAGGAATGATGGGCTCTTCAGGCCCAGCACCCG
TCCCCCCTCCTGCCGGTCGTAACAGCTCTATGGGTCCTCCAGGTGGTTATAGTAGTTCTG
CGGACGGAGGC

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_4307#0      CCGCTANCCCTTGTAGGTGATGCCCTCAACTATGGCGGTTGGCTGTCTCGAGAAGCTGCA 60
consensus_4307#1      ------------------------------------------------------------
                                                                                  

consensus_4307#0      GCAGCACTAGCTCAAGGGATGCCCCTCCGTGGGCCTGGGTGCATGCCACCGATGGGTTAT 120
consensus_4307#1      ---GTAACAGCTCTATGGGT---CCTCCAGGTGGTTATAGTAGTTCTGCGGACGGAGGCT 54
                         * *  ***** * ** *   *****  * *  *       * *  * ** **    *

consensus_4307#0      AATATGGGAGGTCCGTATATGATGGGTGGTGGTGACATGGGGCCGA--TGGGCGGCGGCA 178
consensus_4307#1      ACGGTGGTCAAGGTGGATATGACGGTTCAGGAGGATTCGATAACGGAGTGTACGGAGGCA 114
                      *   ***       * ****** ** *   *  **   *    **   **  *** ****

consensus_4307#0      TGGGCCCTATGGGA---GGAGGAATG---------GGACCAGGTGGAGGAATGGGTCCCA 226
consensus_4307#1      TTGACCATACTGGACAGGGAGGATTCAGTGACCCTGGATACGGTGGAGGAATGGGTCCCA 174
                      * * ** **  ***   ****** *          ***   *******************

consensus_4307#0      TGGGTGGCGGGCCGGTTCCTGGAGGTCGTGGTAGAGGGCCTCGCTCTGGTGGCGGAATGA 286
consensus_4307#1      TGGGTGGCGGGCCGGTTCCTGGAGGTCGTGGTATAGGGCCTCGCTCTGGTGGCGGAATGA 234
                      ********************************* **************************

consensus_4307#0      TGGGTGGAAACGCACCTCTCGCGCAAGGGCAACGAGGAATGATGGGCTCTTCAGGCCCAG 346
consensus_4307#1      TGGGTGGAAACGCACCTCTCGCGCAAGGCCAACGAGGAATGATGGGCTCTTCAGGCCCAG 294
                      **************************** *******************************

consensus_4307#0      CACCCGTCCCCCCTCCCGCCGGTCGTAACAGCTCTATGGGTCCTCCAGGTGGTTATAGTA 406
consensus_4307#1      CACCCGTCCCCCCTCCTGCCGGTCGTAACAGCTCTATGGGTCCTCCAGGTGGTTATAGTA 354
                      **************** *******************************************

consensus_4307#0      GTTCTGCGGACGGAGGCTACGGTGGTCAAGGTGGATATGACGGTTCACGAGGATTCGATA 466
consensus_4307#1      GTTCTGCGGACGGAGGC------------------------------------------- 371
                      *****************                                           

consensus_4307#0      ACGGAGTGTACGGAAGCTGAAGGATATAATGAATGCCAAACTTTCCGATCCGAAACGCAT 526
consensus_4307#1      ------------------------------------------------------------
                                                                                  

consensus_4307#0      AATGGGTACCCAAGGATCTCGACGCCGCCCAAGACGAAGTGAAGACCCAGAACGAGATGA 586
consensus_4307#1      ------------------------------------------------------------
                                                                                  

consensus_4307#0      TGAGGAAGACGAAAACATGATTGACTCCAGAA 618
consensus_4307#1      --------------------------------